Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G69870 701 / 0 NRT1.7 nitrate transporter 1.7 (.1) AT1G27080 610 / 0 NRT1.6 nitrate transporter 1.6 (.1) AT1G69860 513 / 4e-177 Major facilitator superfamily protein (.1) AT1G18880 506 / 7e-174 NRT1.9 nitrate transporter 1.9, Major facilitator superfamily protein (.1) AT3G47960 485 / 6e-165 Major facilitator superfamily protein (.1) AT5G62680 483 / 3e-164 Major facilitator superfamily protein (.1) AT1G68570 410 / 2e-136 Major facilitator superfamily protein (.1) AT5G28470 408 / 5e-136 Major facilitator superfamily protein (.1) AT1G52190 395 / 2e-130 Major facilitator superfamily protein (.1) AT3G54140 391 / 2e-129 ATPTR1 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 1, peptide transporter 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G351200 [exp] 556 / 0 AT5G62680 677 / 0.0 Major facilitator superfamily protein (.1) Potri.017G076800 [exp] 553 / 0 AT3G47960 680 / 0.0 Major facilitator superfamily protein (.1) Potri.012G071400 [exp] 547 / 0 AT5G62680 689 / 0.0 Major facilitator superfamily protein (.1) Potri.012G071500 [exp] 539 / 0 AT5G62680 779 / 0.0 Major facilitator superfamily protein (.1) Potri.006G091600 [exp] 436 / 1e-146 AT5G28470 539 / 0.0 Major facilitator superfamily protein (.1) Potri.016G103200 [exp] 427 / 3e-143 AT5G28470 534 / 0.0 Major facilitator superfamily protein (.1) Potri.010G126300 [exp] 404 / 4e-134 AT1G68570 901 / 0.0 Major facilitator superfamily protein (.1) Potri.001G185700 [exp] 404 / 6e-134 AT1G52190 785 / 0.0 Major facilitator superfamily protein (.1) Potri.016G032000 [exp] 387 / 2e-127 AT1G68570 590 / 0.0 Major facilitator superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037221 [exp] 717 / 0 AT1G69870 709 / 0.0 nitrate transporter 1.7 (.1) Lus10036705 [exp] 713 / 0 AT1G69870 709 / 0.0 nitrate transporter 1.7 (.1) Lus10036669 [exp] 511 / 2e-175 AT5G62680 758 / 0.0 Major facilitator superfamily protein (.1) Lus10015351 [exp] 510 / 2e-175 AT1G18880 682 / 0.0 nitrate transporter 1.9, Major facilitator superfamily protein (.1) Lus10033106 [exp] 479 / 5e-163 AT5G62680 761 / 0.0 Major facilitator superfamily protein (.1) Lus10024345 [exp] 423 / 2e-141 AT5G28470 634 / 0.0 Major facilitator superfamily protein (.1) Lus10042182 [exp] 411 / 2e-136 AT5G28470 620 / 0.0 Major facilitator superfamily protein (.1) Lus10035860 [exp] 399 / 2e-131 AT1G52190 787 / 0.0 Major facilitator superfamily protein (.1) Lus10041466 [exp] 383 / 2e-125 AT1G68570 850 / 0.0 Major facilitator superfamily protein (.1) Lus10011055 [exp] 378 / 5e-124 AT2G02040 847 / 0.0 NITRATE TRANSPORTER 1, ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 2, peptide transporter 2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0015 [poplar] [flax] MFS PF00854 [poplar] [flax] PTR2 POT family
Representative CDS sequence Show only first row Show all	>Potri.010G034700.1 pacid=42797071 polypeptide=Potri.010G034700.1.p locus=Potri.010G034700 ID=Potri.010G034700.1.v4.1 annot-version=v4.1 ATGGCTGAAGATGAAAAGAAGGGCACAAGCTCATACAGGCTATATTGCTCCATAAAATGCTTCCAAAAACCATCATCACCGGAGCAGAAGCACGGCAACC TTGCAGAAACTGAGCAGAAGAAGCCCGGAGGATGGAGAGCCATGCCTTTTATCTTAGGAAATGAGACTTTTGAGAGGCTGGCTACTTTTGGCTTGTTAGC CAACTTCATGGTGTATTTGATGAGAGTCTTTCACTTGGAGCAGGTGACTGCTGCAAACGTCATAAACATCTGGTCTGGTGTAACTAATTTCGCACCGTTG GTTGGTGCATTCATCTCTGATGCCTATGTGGGCAGGTTTAAGACCATTGCTTTTGCATCCTGTGCAGCTTTCCTGGGAATGGTGACTGTGACTTCGACGG CATGGGTGCCTTATCTTCACCCTCAAAAATGCGAGCCTGAAGGAAAGCAGCAGTCTTATGGGAACTGTGAAAGTCCCACCAGCATGCAATTGGGTGTTCT GTTGCTTGGCTTAGGGTTCCTATCTATCGGAACAGGTGGGATTAGGCCATGCAGCATTCCGTTTGGTGTTGATCAGTTTGACCCTACAACTGAAGAAGGG ATAAAAGGGATTAGCAGCTACTACAATTGGTATTATACAACCTTCACGGTGGTGATGTTGATCACTTTAACCGCAGTGGTATATGTTCAAGACTCTGTTA GCTGGGTTTTGGGTTTTGGAATACCTACTGTGCTTATGCTCTGCTCCATCATACTCTTCTTCATTGGAACAAGGATTTATGTGCATGTAAAGCCAGAAGG AAGTGTTTTCTCTAGCATTGCACAGGTTTTTGTTTCTGCTTATAAAAAGCGTAGGCTTAAGCTTCCTGGCAATTGTGATGGAGAGCAGGTTGATGGGATC TTTTATGATCCTCCAATTAAAGATCAATTAACAATATTGTCAAAGCTCCCTCTTACCAATCAGATCAGGTTTTTGAACAAGGCTGCAATGATAGAGAAAG AAACTGACCTCAAGCCAGATGGTTCGTGTGCTAAGCAATGGAGATTGTGCAGTGTCCAACAGGTTGAAGAGGTGAAATGCCTGATAAAAATAGGTCCAAT ATGGGCTTCTAGTATTGTTAGCTTGACTTCAATGGTACAACAAGGAACATTTACTGTGTCTCAAGCCTTGAAAATGGACAGACACCTTGGAGAAAAATTC CAAATCCCAGCTAGTTCCATCATCGTCGTGTCGTTGATAACAATAGGAATATGGCTCCCATTCTATGACAGAGTCCTAGTGCCAGCCATTCGAAAAGTAA CAAAACATGAAGGTGGAATCACAATTCTCCAAAGAATTGGAATTGGGAATGTATTCTCTGTTCTATCAATGGTAGTAGCTGGATTGGTGGAGAGGGAGAG AAGAGCTGCAGCAATTTCACACCCAGAGGCTGCACCCATGTCAGTCTTTTGGCTAGCTCCACAACTTGTGGTAATGGGGTTATGCGAGGCATTCGTTGGC ACTGGACAAATTGAATTTTACAACAAGCAGTTTCCTGATCACATGAGAAGCCTCGGTAACTCTCTTTTCTTCTGCTCATTTGCTGGTGCAAGTTACCTTA GTACCATGTTGGGCAGCATTGTTCATAAGGTTACTGGAACGAGACACCATCCAGACTGGCTGACAAATGATCTAAATGCTGGGAATTTGGATTACTTCTA CTTCCTTTTGGCAGGAATGGGGGTTGTCAATTGGTTTTATTTTCTGCTTTGTGCTCATCGATATCGTTACAAGGTCAGCACTGTACTAATCCCACTATGA
AA sequence Show only first row Show all	>Potri.010G034700.1 pacid=42797071 polypeptide=Potri.010G034700.1.p locus=Potri.010G034700 ID=Potri.010G034700.1.v4.1 annot-version=v4.1 MAEDEKKGTSSYRLYCSIKCFQKPSSPEQKHGNLAETEQKKPGGWRAMPFILGNETFERLATFGLLANFMVYLMRVFHLEQVTAANVINIWSGVTNFAPL VGAFISDAYVGRFKTIAFASCAAFLGMVTVTSTAWVPYLHPQKCEPEGKQQSYGNCESPTSMQLGVLLLGLGFLSIGTGGIRPCSIPFGVDQFDPTTEEG IKGISSYYNWYYTTFTVVMLITLTAVVYVQDSVSWVLGFGIPTVLMLCSIILFFIGTRIYVHVKPEGSVFSSIAQVFVSAYKKRRLKLPGNCDGEQVDGI FYDPPIKDQLTILSKLPLTNQIRFLNKAAMIEKETDLKPDGSCAKQWRLCSVQQVEEVKCLIKIGPIWASSIVSLTSMVQQGTFTVSQALKMDRHLGEKF QIPASSIIVVSLITIGIWLPFYDRVLVPAIRKVTKHEGGITILQRIGIGNVFSVLSMVVAGLVERERRAAAISHPEAAPMSVFWLAPQLVVMGLCEAFVG TGQIEFYNKQFPDHMRSLGNSLFFCSFAGASYLSTMLGSIVHKVTGTRHHPDWLTNDLNAGNLDYFYFLLAGMGVVNWFYFLLCAHRYRYKVSTVLIPL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G69870		NRT1.7	nitrate transporter 1.7 (.1)		Potri.010G034700 [exp]	0	1
AT5G58900	MYB		Homeodomain-like transcription...		Potri.001G248800 [exp]	1.41	0.8658
AT1G73980			Phosphoribulokinase / Uridine ...		Potri.015G055400 [exp]	5.29	0.8566
AT1G22340		ATUGT85A7	UDP-glucosyl transferase 85A7 ...		Potri.007G132400 [exp]	10.81	0.8107
AT5G20260			Exostosin family protein (.1)		Potri.006G064800 [exp]	12.72	0.8550
AT3G17650		YSL5, PDE321	pigment defective 321, YELLOW ...		Potri.017G151600 [exp]	13.30	0.8735
					Potri.018G099301 [exp]	13.85	0.8651
AT3G48280		CYP71A25	"cytochrome P450, family 71, s...		Potri.012G089900 [exp]	22.31	0.7925	CYP71AP2v1
AT4G31940		CYP82C4	"cytochrome P450, family 82, s...		Potri.016G008500 [exp]	23.32	0.8561
AT5G01015			unknown protein		Potri.006G113700 [exp]	23.95	0.8323
AT2G39190		ATATH8	Protein kinase superfamily pro...		Potri.010G221000 [exp]	24.18	0.8341

Compare expression of checked genes

Potri.010G034700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.