Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G38280 974 / 0 ATAMPD, FAC1 EMBRYONIC FACTOR1, ADENOSINE 5'-MONOPHOSPHATE DEAMINASE, AMP deaminase, putative / myoadenylate deaminase, putative (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G119300 [exp] 989 / 0 AT2G38280 1355 / 0.0 EMBRYONIC FACTOR1, ADENOSINE 5'-MONOPHOSPHATE DEAMINASE, AMP deaminase, putative / myoadenylate deaminase, putative (.1.2) Potri.006G102000 [exp] 978 / 0 AT2G38280 1381 / 0.0 EMBRYONIC FACTOR1, ADENOSINE 5'-MONOPHOSPHATE DEAMINASE, AMP deaminase, putative / myoadenylate deaminase, putative (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037223 [exp] 1117 / 0 AT2G38280 989 / 0.0 EMBRYONIC FACTOR1, ADENOSINE 5'-MONOPHOSPHATE DEAMINASE, AMP deaminase, putative / myoadenylate deaminase, putative (.1.2) Lus10036700 [exp] 1050 / 0 AT2G38280 939 / 0.0 EMBRYONIC FACTOR1, ADENOSINE 5'-MONOPHOSPHATE DEAMINASE, AMP deaminase, putative / myoadenylate deaminase, putative (.1.2) Lus10002849 [exp] 952 / 0 AT2G38280 1330 / 0.0 EMBRYONIC FACTOR1, ADENOSINE 5'-MONOPHOSPHATE DEAMINASE, AMP deaminase, putative / myoadenylate deaminase, putative (.1.2) Lus10027814 [exp] 931 / 0 AT2G38280 1280 / 0.0 EMBRYONIC FACTOR1, ADENOSINE 5'-MONOPHOSPHATE DEAMINASE, AMP deaminase, putative / myoadenylate deaminase, putative (.1.2) Lus10003378 [exp] 387 / 5e-123 AT2G38280 661 / 0.0 EMBRYONIC FACTOR1, ADENOSINE 5'-MONOPHOSPHATE DEAMINASE, AMP deaminase, putative / myoadenylate deaminase, putative (.1.2) Lus10005043 [exp] 217 / 1e-64 AT2G38280 249 / 1e-77 EMBRYONIC FACTOR1, ADENOSINE 5'-MONOPHOSPHATE DEAMINASE, AMP deaminase, putative / myoadenylate deaminase, putative (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0034 [poplar] [flax] Amidohydrolase PF00962 [poplar] [flax] A_deaminase Adenosine/AMP deaminase
Representative CDS sequence Show only first row Show all	>Potri.010G034800.1 pacid=42797938 polypeptide=Potri.010G034800.1.p locus=Potri.010G034800 ID=Potri.010G034800.1.v4.1 annot-version=v4.1 ATGGATTCATCATCACCGCCGCCATCATCTTCTCTGCAGCTAGCAATGGCGGCTCTAGTCGGTGCCTCACTAATGGCAATTTCTGCATTTTTCATTCACA AGCGCTCCGTCGACCAAGTCCTTGATCGCCTCATCACCATCCGCCGCAATTCTCTTCTCAAAGAAAAGGAAAAGGAAACCGTTGCAGTTGATGATAAAAA TCATGATGAAGATGAAGAGCACGGATCAGACGGTGAACTGATTCTTATTGACCGGAAAATACTTGTGTCGCATTCCTTGGATGATGATACTGCAATTCCA AGTTATAGGAGGATGTCGTCTTCCATGCCCAATGTCGTGTTGATCAATGATTGGTTCGATGAGGAATCAATGAGGTTTGGCCTTGGTTCTCACCGAGAAG ACAATAACCTCAATTTCATTCCCTTAGGGCTTCCGCCTCTGCATACGGTTCCAAGACAAGGTGATGATAAGACTCTGAACTACTCTAGTTCTCTTAAAAG ACTGGCATCTATGGGCAGGTTAATGACTCCAAGGTCACCAAGTGGTAATGCCTTTGATTATTCTGGGGATTCTGAAGATGAAGGAACGGCACTTGCTGAT GAAGATACCACTATTTATTCTCAGAATGTGGATTCTTCAGCTGATTATATAAATGATATTGATCCAAAAATTCAAAATTCTACCGCTCTACAATTTAGTT ATGTTGATAGTACAAATAGTGTTCCCGGCCAAAATTTTGAACAACATGGTGACAGAAAGGGACATGCAACTTCAGGTCATCAAGTGGGAAGCAATCCCGT TATTGCTACCATGATTTTACCTCAACGAACTTCTGTACCTGAGTCAATAAATATTGAAGAGGAAGAAGTGCGTAAGATGATTCGTGAATGTTTGGATCTG AGAAATAGTTATCTTTATACGGAAAAGGTCGCTCCATGGATGAAGCATTCTGTGGAAGAATCTACTGCATCAGAGGTGAATACTGATCACTTTGAACCTT TTCCAGCAACTTCACATTGCTTTAGGATGGAAGATGGAGTTGTTCATGTTTATGCCAGTGAACATGATACTGTAGAACTTTTCCCTGTTGCTAGTGCAAC CGCCTTTTTCACTGATATGCATCATGTCTTAAGAATCATGTCTATCGGAAATGTTCGCTCTGCATGCTATCTCAGGCTACGATTTCTCGAGGAGAAATTC CGCCTTCATCTGTTAATAAATGCAGACAGGGAATCCATGGCTCAGAAGGGTGCACCCCACCGTGATTTCTACAATATCAGAAAAGTCGATACACATGTGC ATCATTCTGCTTGCATGAACCAGAAGCATCTCTTGCGTTTCATCAAGTCAAAACTTAGAGAAGAACCAGATGAGGTTGTTATATTCAGAGATGGAAAATA CATGACGCTAAATGAAGTTTTTGAGAGTTTAGATTTGACTGTGTATGATTTGAATGTTGATTTGTTGGATGTCCATGCTGATAAGAGCACCTTTCACCGT TTTGATAAATTCAACCTCAAATATAATCCTTGTGGACAAAGCAGACTCAGAGAGATCTTTTTAAAGCAGGATAATCTCATTCAAGGACGTTTCTTGGCTG AAGTAACAAAAAGAGTTTTATCAGATCTTGAGGCAAGCAAATACCAGATGGCCGAGTATAGAGTATCCATATATGGGAGAAAACAAAGTGAATGGGACCA GTTGGCAAGTTGGTTCATTAATAATGCAATTTACAGTGAGAATGCTGTTTGGTTGATCCAGCTTCCACGGCTTTACAATGTATACAAGCAAATGGGAACA GTTACTTCGTTCCAGAATATTCTTGATAATGTTTTCATTCCACTATTCGAAGTTACAATCAATCCGAGCTCCCATCCTCAACTACATGTTTTTTTAATGC AGGTTGTGGGATTAGATATTGTTGATGATGAAAGCAGACCAGAAAGGCGTCCAACTAAACACATGCCAAAGCCAGCTGAATGGACCAATGAGTTTAATCC AGCATATTCCTATTATGCATATTACTGTTATGCGAACTTGTATACTCTTAACAAGCTTCGCGAATCAAAAGGATTGCCTACAATCAAATTTCGTCCACAC TGTGGAGAGGCTGGTGATGTTGACCATTTGGCTGCTGCATTCCTTCTATGCAATAATATATCTCATGGGATCAATTTGCGGAAATCCCCTGTCTTGCAAT ATTTGTATTACCTTGCTCAGATTGGATTGGCTATGTCACCATTGAGCAATAATTCCCTTTTCCTGAACTATCATCACAACCCATTTCCTATATTCTTCCA GCGTGGCTTGAATGTTTCTCTCTCAACTGATGACCCCTTGCAAATTCATTTAACAAAAGAACCATTAGTGGAAGAGTACAGTGTTGCAGCAAAGGTATGG AAGCTCAGTGCATGTGACCTATGCGAGATAGCGAGAAATTCTGTTTATCAATCTGGATTTTCCCATGCAGCAAAGTTACATTGGTTGGGTAGCAAATATT TTTTGCGGGGGCCAGAAGGAAACAACATTCACAAGTCAAACGTACCCGATATAAGGATTGTCTTTCGACACGAGACATGGAAAGAGGAGATGCAGTATGT TTTCTTGGGGATTGACAAATTTCCTGAAGAACTAGATTTCTGA
AA sequence Show only first row Show all	>Potri.010G034800.1 pacid=42797938 polypeptide=Potri.010G034800.1.p locus=Potri.010G034800 ID=Potri.010G034800.1.v4.1 annot-version=v4.1 MDSSSPPPSSSLQLAMAALVGASLMAISAFFIHKRSVDQVLDRLITIRRNSLLKEKEKETVAVDDKNHDEDEEHGSDGELILIDRKILVSHSLDDDTAIP SYRRMSSSMPNVVLINDWFDEESMRFGLGSHREDNNLNFIPLGLPPLHTVPRQGDDKTLNYSSSLKRLASMGRLMTPRSPSGNAFDYSGDSEDEGTALAD EDTTIYSQNVDSSADYINDIDPKIQNSTALQFSYVDSTNSVPGQNFEQHGDRKGHATSGHQVGSNPVIATMILPQRTSVPESINIEEEEVRKMIRECLDL RNSYLYTEKVAPWMKHSVEESTASEVNTDHFEPFPATSHCFRMEDGVVHVYASEHDTVELFPVASATAFFTDMHHVLRIMSIGNVRSACYLRLRFLEEKF RLHLLINADRESMAQKGAPHRDFYNIRKVDTHVHHSACMNQKHLLRFIKSKLREEPDEVVIFRDGKYMTLNEVFESLDLTVYDLNVDLLDVHADKSTFHR FDKFNLKYNPCGQSRLREIFLKQDNLIQGRFLAEVTKRVLSDLEASKYQMAEYRVSIYGRKQSEWDQLASWFINNAIYSENAVWLIQLPRLYNVYKQMGT VTSFQNILDNVFIPLFEVTINPSSHPQLHVFLMQVVGLDIVDDESRPERRPTKHMPKPAEWTNEFNPAYSYYAYYCYANLYTLNKLRESKGLPTIKFRPH CGEAGDVDHLAAAFLLCNNISHGINLRKSPVLQYLYYLAQIGLAMSPLSNNSLFLNYHHNPFPIFFQRGLNVSLSTDDPLQIHLTKEPLVEEYSVAAKVW KLSACDLCEIARNSVYQSGFSHAAKLHWLGSKYFLRGPEGNNIHKSNVPDIRIVFRHETWKEEMQYVFLGIDKFPEELDF

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G38280		ATAMPD, FAC1	EMBRYONIC FACTOR1, ADENOSINE 5...		Potri.010G034800 [exp]	0	1
AT5G05450			P-loop containing nucleoside t...		Potri.010G184132 [exp]	6.32	0.7956
AT3G58560			DNAse I-like superfamily prote...		Potri.016G061700 [exp]	14.17	0.7482
AT2G01480			O-fucosyltransferase family pr...		Potri.008G130600 [exp]	19.07	0.7895
AT2G41710	AP2_ERF		Integrase-type DNA-binding sup...		Potri.016G056400 [exp]	21.58	0.8255
AT1G04635		EMB1687	EMBRYO DEFECTIVE 1687, ribonuc...		Potri.015G001200 [exp]	24.53	0.7640
AT1G04840			Tetratricopeptide repeat (TPR)...		Potri.001G316500 [exp]	25.98	0.8228
AT4G13870		WRNEXO, ATWRNEX...	Werner syndrome-like exonuclea...		Potri.017G059200 [exp]	29.08	0.7330
AT4G01400			unknown protein		Potri.014G105900 [exp]	30.19	0.7813
AT1G05120			Helicase protein with RING/U-b...		Potri.014G154600 [exp]	31.93	0.7826
					Potri.010G163501 [exp]	34.78	0.7808

Compare expression of checked genes

Potri.010G034800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.