Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G27090 372 / 3e-126 glycine-rich protein (.1) AT3G24690 90 / 3e-21 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G194200 [exp] 546 / 0 AT1G27090 359 / 3e-121 glycine-rich protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037224 [exp] 379 / 1e-128 AT1G27090 356 / 7e-120 glycine-rich protein (.1) Lus10036699 [exp] 373 / 5e-128 AT1G27090 351 / 8e-120 glycine-rich protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.010G034900.1 pacid=42798017 polypeptide=Potri.010G034900.1.p locus=Potri.010G034900 ID=Potri.010G034900.1.v4.1 annot-version=v4.1 ATGGCGGCCACACCTACCTCAGAAATGGCGGACGGACCCGTCCTCAGCCTAATCACCAAACGCCTTCGCGCTCTCAAGAAGAAACACAACCGAATCCTCC AGATGGAAGAGTCCATCGCTCAAGGCAAGCCTATCAACAAAGAACAAGAGGACTTCCTCCGTTCTAAACCCTCTGTTTCCGCAGCAATTGACGAGCTCGA GAAGCTCCGCCAGCCTCTCTCCATCGCTGTCTCGGAAGAAATTGAGCTCGCTGCTCATCGACTCAACCCTAAATCTGACAGCACAGTTGTTCCGGAAGCA AGTGATGAAATGTTGGAGGATCTGTTGCACTTGTTGTATTTTGGGTCGTTGTTTGATGTCAAGTCACAGAACGATTTCACTGCCACCATGTTGACTCGGA CACATGAAAGAGGTTGTTGCTTGACTTATGATTATGTCACTGATGATGCCACGGATCTGCTTGGCGAGAGGGATTTGGATATGATATCTATGTTGGGTGG TTTATTGATTTCGCGTCCCGGCAATACTAGCTTATCTCATAAGAATGCTTTGCAGCGTTGTATGGAGCACGCGAAGTTGTGGCTGGCTAATTCAGACCAA CCTATTGATTCCACCGCTAATGTTTCCTATGCTGAATTGAGGGAGAGGCTCAACAAGATCATGGCTTCCGATTATTTTACTACCACACCGGAGATGAAAG CTCCGGTGGAAGTGGCTGCTGCTGCTGGCAATTACGTGCCTTTCCAGGTTCCTTTCTCAGTTCCAGTACAAGTGGATGACTCCGTTGCACAATACCAGCC AAAGGAACAAGAGACAGAAAATTTCCAACACGAGACTGGTGATAATCAGTCTACTCCTACTGAGGAATCTCAGAAGGATGAACAGGAGACTGGAAATCCA GCAGAAGTTGTCCTAGATCAAGAAGAGCAAGACAAGCCATTGACAGAAGTAGGAGTAGATCATAATCAGAGAGAGCTGGAGCCTGAGCAACAATATGTCA ATCGAAGGAACTACCAGAACCAAAGAGGTGGTCGTGGTGGTGGCAATGGCGGTCGTAGGGGCTATTCAAATGGCCGTGGTGGTCGAAGTGGTTCTAGAGG AGGTGGTGGCTACCAAAATGGCCGCAACCAATATTATGATCAACCCGGAAACTTTCAGCAGAGGAACTACTATAATAATCGAGGAAGGGGTGGCAGAGGT GGTGGGCACACTTATAACAACCACGGTTCGACAGGTCAAGGTGGTCCTGCCGCTGCTGATGTTGGGGTGGCTTCATGA
AA sequence Show only first row Show all	>Potri.010G034900.1 pacid=42798017 polypeptide=Potri.010G034900.1.p locus=Potri.010G034900 ID=Potri.010G034900.1.v4.1 annot-version=v4.1 MAATPTSEMADGPVLSLITKRLRALKKKHNRILQMEESIAQGKPINKEQEDFLRSKPSVSAAIDELEKLRQPLSIAVSEEIELAAHRLNPKSDSTVVPEA SDEMLEDLLHLLYFGSLFDVKSQNDFTATMLTRTHERGCCLTYDYVTDDATDLLGERDLDMISMLGGLLISRPGNTSLSHKNALQRCMEHAKLWLANSDQ PIDSTANVSYAELRERLNKIMASDYFTTTPEMKAPVEVAAAAGNYVPFQVPFSVPVQVDDSVAQYQPKEQETENFQHETGDNQSTPTEESQKDEQETGNP AEVVLDQEEQDKPLTEVGVDHNQRELEPEQQYVNRRNYQNQRGGRGGGNGGRRGYSNGRGGRSGSRGGGGYQNGRNQYYDQPGNFQQRNYYNNRGRGGRG GGHTYNNHGSTGQGGPAAADVGVAS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G27090			glycine-rich protein (.1)		Potri.010G034900 [exp]	0	1
AT1G55040			zinc finger (Ran-binding) fami...		Potri.013G022300 [exp]	6.55	0.8808
AT1G73840		ESP1	ENHANCED SILENCING PHENOTYPE 1...		Potri.012G056200 [exp]	8.48	0.8728
AT3G23370			RNA-binding (RRM/RBD/RNP motif...		Potri.010G070001 [exp]	9.00	0.8644
AT1G05590		HEXO2, ATHEX3	BETA-HEXOSAMINIDASE 3, beta-he...		Potri.001G232600 [exp]	9.53	0.8587
AT4G10620			P-loop containing nucleoside t...		Potri.001G010400 [exp]	10.86	0.8783
AT3G13160			Tetratricopeptide repeat (TPR)...		Potri.011G032400 [exp]	11.22	0.8467
AT3G22330		ATRH53, PMH2	putative mitochondrial RNA hel...		Potri.006G024100 [exp]	11.48	0.8767
AT1G12830			unknown protein		Potri.001G323000 [exp]	11.83	0.8638
AT3G27550			RNA-binding CRS1 / YhbY (CRM) ...		Potri.001G343700 [exp]	15.96	0.8529
AT3G49080			Ribosomal protein S5 domain 2-...		Potri.012G144700 [exp]	16.94	0.8324

Compare expression of checked genes

Potri.010G034900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.