Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G10350 429 / 1e-151 DNAJ heat shock family protein (.1) AT1G59725 424 / 4e-150 DNAJ heat shock family protein (.1) AT2G20560 384 / 3e-134 DNAJ heat shock family protein (.1) AT3G08910 378 / 5e-132 DNAJ heat shock family protein (.1) AT3G47940 377 / 4e-131 DNAJ heat shock family protein (.1) AT5G01390 369 / 4e-128 DNAJ heat shock family protein (.1.2.3.4) AT4G28480 365 / 2e-126 DNAJ heat shock family protein (.1.2) AT5G25530 348 / 9e-120 DNAJ heat shock family protein (.1) AT2G20550 243 / 2e-79 HSP40/DnaJ peptide-binding protein (.1.2) AT1G44160 159 / 8e-46 HSP40/DnaJ peptide-binding protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G194000 [exp] 550 / 0 AT1G10350 402 / 4e-141 DNAJ heat shock family protein (.1) Potri.015G066100 [exp] 389 / 3e-136 AT3G47940 436 / 5e-154 DNAJ heat shock family protein (.1) Potri.018G034600 [exp] 384 / 3e-134 AT5G25530 410 / 8e-144 DNAJ heat shock family protein (.1) Potri.011G057601 [exp] 380 / 2e-132 AT2G20560 444 / 2e-157 DNAJ heat shock family protein (.1) Potri.017G016100 [exp] 374 / 4e-130 AT2G20560 420 / 7e-148 DNAJ heat shock family protein (.1) Potri.007G136700 [exp] 365 / 1e-126 AT2G20560 416 / 5e-146 DNAJ heat shock family protein (.1) Potri.007G135700 [exp] 363 / 8e-126 AT2G20560 416 / 3e-146 DNAJ heat shock family protein (.1) Potri.006G246700 [exp] 350 / 1e-120 AT5G25530 394 / 1e-137 DNAJ heat shock family protein (.1) Potri.017G016000 [exp] 343 / 6e-118 AT2G20560 419 / 4e-147 DNAJ heat shock family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030803 [exp] 455 / 3e-162 AT1G10350 434 / 2e-153 DNAJ heat shock family protein (.1) Lus10013280 [exp] 439 / 3e-155 AT1G10350 422 / 5e-148 DNAJ heat shock family protein (.1) Lus10036668 [exp] 397 / 7e-139 AT3G47940 454 / 6e-161 DNAJ heat shock family protein (.1) Lus10017687 [exp] 378 / 2e-131 AT2G20560 551 / 0.0 DNAJ heat shock family protein (.1) Lus10005033 [exp] 375 / 2e-130 AT3G08910 503 / 0.0 DNAJ heat shock family protein (.1) Lus10027803 [exp] 374 / 3e-130 AT3G08910 504 / 0.0 DNAJ heat shock family protein (.1) Lus10013981 [exp] 369 / 4e-128 AT2G20560 488 / 8e-175 DNAJ heat shock family protein (.1) Lus10015402 [exp] 365 / 3e-126 AT2G20560 483 / 7e-173 DNAJ heat shock family protein (.1) Lus10021961 [exp] 362 / 1e-125 AT5G25530 468 / 7e-167 DNAJ heat shock family protein (.1) Lus10041254 [exp] 362 / 2e-125 AT5G25530 464 / 2e-165 DNAJ heat shock family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0392 [poplar] [flax] Chaperone-J PF00226 [poplar] [flax] DnaJ DnaJ domain CL0392 [poplar] [flax] PF01556 [poplar] [flax] DnaJ_C DnaJ C terminal domain
Representative CDS sequence Show only first row Show all	>Potri.010G035000.1 pacid=42799651 polypeptide=Potri.010G035000.1.p locus=Potri.010G035000 ID=Potri.010G035000.1.v4.1 annot-version=v4.1 ATGGGTGTTGATTACTATAACATACTGAAACTGAACCGGAACGCGACTGAAGAGGACATGAAAAAGGCATACAAGAGACTGGCAATGAAATGGCATCCAG ACAAGAACCCTGTAAACAAGAAAGAAGCAGAAGCCAAGTTCAAGCTTATCTCCGAAGCCTACGATGTCTTATCAGACCCTAACAAGCGTCAGATCTATGA TCTCTACGGTGAAGAAGGGCTGAAGTCTTTTGATCAAATCCCACCTCCAACTACCAATGTGGGTGCTTCTTTCAGGTTCAATCCTCGTGACGCGGAGGAT ATTTTCGCTGAATTCTTTGGAGGAGGTGGCGGATCCGGTGGTGTTGGAAAGGGGTATTTTCGCAATAATAATGGTAATAATTACGGGGCTGAGCTTAACA GGAAAGCAGCGCCTGTTGAAAGCAAGTTGCTTTGCACGTTGGAAGAGCTTTATAAAGGAACTCGAAGAAAGATGAGGATTTCTCGTTCTGTTCCTGATGA TTTCGGCAAGCCGAAAACCGTCGAGGAAATCTTAAAGATAGACATCAAGCCTGGCTGGAAGAAGGGCACAAAAATCACTTTTCCTGAGAAAGGCAATCAA GAACCTGGAATCACTCCAGCTGATCTAATTTTCGTGGTGGATGAGAAGCCCCATTCTGTTTTCAAGAGGGATGGAAATGATCTGGTGATCAACCAGAAGA TCTCGTTATTGGAAGCTCTCACAGGGAAAACCATCGAATTGACAACCTTGGATGGAAGATATCTCCCAGTCCCAGTAACAGATATTGTCAAACCAGGTCA GGAGTTGCTAGTCTCAAATGAAGGAATGCCCATCTCAAAAGAGCCCACCAAGAGAGGAAACCTTAGAATCAAGTTTGATGTCACATTTCCAACAAGACTT ACAGTGGAACAGAAATCTGACCTCAAGAAGGCCCTAGGTGCACCTGATAATTAA
AA sequence Show only first row Show all	>Potri.010G035000.1 pacid=42799651 polypeptide=Potri.010G035000.1.p locus=Potri.010G035000 ID=Potri.010G035000.1.v4.1 annot-version=v4.1 MGVDYYNILKLNRNATEEDMKKAYKRLAMKWHPDKNPVNKKEAEAKFKLISEAYDVLSDPNKRQIYDLYGEEGLKSFDQIPPPTTNVGASFRFNPRDAED IFAEFFGGGGGSGGVGKGYFRNNNGNNYGAELNRKAAPVESKLLCTLEELYKGTRRKMRISRSVPDDFGKPKTVEEILKIDIKPGWKKGTKITFPEKGNQ EPGITPADLIFVVDEKPHSVFKRDGNDLVINQKISLLEALTGKTIELTTLDGRYLPVPVTDIVKPGQELLVSNEGMPISKEPTKRGNLRIKFDVTFPTRL TVEQKSDLKKALGAPDN

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G10350			DNAJ heat shock family protein...		Potri.010G035000 [exp]	0	1
AT3G14720		ATMPK19	ARABIDOPSIS THALIANA MAP KINAS...		Potri.001G381300 [exp]	8.24	0.5293	Pt-TDY1.2
AT1G02120		VAD1	VASCULAR ASSOCIATED DEATH1, GR...		Potri.014G047600 [exp]	28.98	0.5208
AT5G38760			Late embryogenesis abundant pr...		Potri.017G108350 [exp]	35.29	0.5008
AT1G05270			TraB family protein (.1)		Potri.017G038500 [exp]	41.92	0.5068
AT2G20050			protein serine/threonine phosp...		Potri.018G084900 [exp]	54.63	0.4837
AT1G05500		SYT5, NTMCTYPE2...	synaptotagmin 5, ARABIDOPSIS T...		Potri.018G124000 [exp]	82.36	0.4600
AT1G13260	AP2_ERF	EDF4, RAV1	ETHYLENE RESPONSE DNA BINDING ...		Potri.015G015501 [exp]	92.12	0.4532

Compare expression of checked genes

Potri.010G035000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.