Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G27100 542 / 0 Actin cross-linking protein (.1) AT1G59710 374 / 2e-127 Protein of unknown function (DUF569) (.1) AT1G69890 338 / 2e-113 Protein of unknown function (DUF569) (.1) AT3G28630 339 / 3e-113 Protein of unknown function (DUF569) (.1), Protein of unknown function (DUF569) (.2) AT1G69900 319 / 2e-104 Actin cross-linking protein (.1) AT3G01311 300 / 1e-98 Protein of unknown function (DUF569) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G193900 [exp] 817 / 0 AT1G27100 494 / 2e-171 Actin cross-linking protein (.1) Potri.004G130200 [exp] 499 / 2e-173 AT1G27100 421 / 2e-143 Actin cross-linking protein (.1) Potri.017G075900 [exp] 478 / 2e-165 AT1G27100 431 / 1e-147 Actin cross-linking protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030804 [exp] 438 / 1e-152 AT1G59710 357 / 2e-124 Protein of unknown function (DUF569) (.1) Lus10036694 [exp] 393 / 7e-135 AT1G59710 343 / 5e-119 Protein of unknown function (DUF569) (.1) Lus10001124 [exp] 322 / 4e-106 AT3G28630 313 / 1e-105 Protein of unknown function (DUF569) (.1), Protein of unknown function (DUF569) (.2) Lus10013281 [exp] 309 / 5e-103 AT1G59710 240 / 2e-79 Protein of unknown function (DUF569) (.1) Lus10015346 [exp] 313 / 9e-103 AT3G28630 317 / 3e-107 Protein of unknown function (DUF569) (.1), Protein of unknown function (DUF569) (.2) Lus10037230 [exp] 239 / 2e-73 AT1G27100 181 / 3e-54 Actin cross-linking protein (.1) Lus10037231 [exp] 231 / 1e-71 AT1G27100 192 / 2e-57 Actin cross-linking protein (.1) Lus10036693 [exp] 209 / 8e-65 AT1G27100 180 / 2e-54 Actin cross-linking protein (.1) Lus10036692 [exp] 62 / 9e-12 AT1G27100 49 / 2e-08 Actin cross-linking protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0066 [poplar] [flax] Trefoil PF04601 [poplar] [flax] DUF569 Domain of unknown function (DUF569)
Representative CDS sequence Show only first row Show all	>Potri.010G035100.1 pacid=42800061 polypeptide=Potri.010G035100.1.p locus=Potri.010G035100 ID=Potri.010G035100.1.v4.1 annot-version=v4.1 ATGGAGTTTTTTACCAAAACAAAGGCAGTTAAGCTCCGGAGCCACCTTGAAAAGTACTTGATCGCAGACGAAGACCTAGAAACTGCTCGTCAAACACGAC ACGGCTCGTCACGCAAAGCAGCCATATGGTTCGTGGAGTTAGTCGATGAAAAAAGCCATGTTATTCGTCTCAAAAGCTGCTATGGCAGATTCCTCACAGC CTCTGACATGCCCTTTTTATTAGGCATGACAGGGAAGAAAGTGATCCAGACAGAGCTGTCTGAAAATAATTTTGACAACTGGAAGCTGGAGTGGGAGCCT ATAAGAGACGGGTTTCAGGTTAAACTTAAGAGCTGGTGTGGCAAGTTCTTGCGAGCTAACGGAGGGACACCGCCGTGGAGAAACTCGGTGACTCACGATG AGCCACACACTGGTTCGACGAGAAAATGGATTCTTTGGGATATTGAGGCGGTACAAGAGATTGGAAATGATTCCTTGAAGGATTACTTGTCGTCTATGTC GAGCTTTTCTACAGTGTCCGATGATGTTCTTGACGCTATTTCGGATGATTATAAGGGATCGGAAGCCGGGTCTCCGATATCGGTTGTGTCGTCCGGGAGG ACTCCGAGATTGACCCTAGTAAAGTCAATGTCTCCAAGATTGTCTTTGTTCTCAACTAAGACCAACTCCACCAAGTTCCGGTCAGGGATGGATTTCTTTC ACAAAGCAAAAGCCGTCCGTCTCCGCAGCCACCACGACAAGTACCTTCTCGCCGAAGATGATGAGGAGTCCGTGATCCAAGACCGAGACGGATCCTCCAA GACCGCCAGATGGATTGTCGAACTTGTACCTGGATCTGACTTCATCATCCGCCTCAAGTCCTGCTACGGTAAATACCTCACTGCTTCTAATCAGCCTTTT CTTTTGGGCATGACGGGTCGCAAGGTCCTTCAGACTCTTCCCAGACGCCTTGACTCGTCCGTCGAGTGGGAGCCCGTTAGAGAAGGGGGTCAGATGAAGC TCAAGACCCGATATGGGAACTTCTTGAGAGCCAATGGGGGATTGCCACCTTGGAGAAACTCGGTTACTCATGACGTCCCTCATAGGACTTCTACACAAGA TTGGGTCCTTTGGGATGTTGATGTTCTGGAGATTCAAGTACATCAGTCTCATACTGGTCATGCGCCTGATCTGAACAAAATCATGTCTCATGCCGATTCT TTGGATTTCGAGTCCACCTCTCCAACTTCTCTCTCTATCAAATCAGGAAATTTTTCAAGACAGGAGTCGAGTGATTCTCATGTGACTTCGCCAAGGAAAT CAGAAGGGAGGACGATATACTACCATGTGGCTGATGAGAGTGGTGAGGTTGATGATGATGCAACGGTGGGTTACTCATTGAATTTTAAGGGAAATGGGGT TGATGAGTTGACTCAAAAATTGAAGGAAGACACGGGCCTTGAGGATATTGTTGTGTGTACTCGTAGTCCCTTGAATGCAAAGCTTTATCCACTTCGATTG CAGCTTCCTCCAAACAATGCAGATATGCATGTTATTCTAGTTCAGTCATCGTCCAACGCGGCCAGGGATTTTGCAAAACCAGGAGTTCCTTTATGA
AA sequence Show only first row Show all	>Potri.010G035100.1 pacid=42800061 polypeptide=Potri.010G035100.1.p locus=Potri.010G035100 ID=Potri.010G035100.1.v4.1 annot-version=v4.1 MEFFTKTKAVKLRSHLEKYLIADEDLETARQTRHGSSRKAAIWFVELVDEKSHVIRLKSCYGRFLTASDMPFLLGMTGKKVIQTELSENNFDNWKLEWEP IRDGFQVKLKSWCGKFLRANGGTPPWRNSVTHDEPHTGSTRKWILWDIEAVQEIGNDSLKDYLSSMSSFSTVSDDVLDAISDDYKGSEAGSPISVVSSGR TPRLTLVKSMSPRLSLFSTKTNSTKFRSGMDFFHKAKAVRLRSHHDKYLLAEDDEESVIQDRDGSSKTARWIVELVPGSDFIIRLKSCYGKYLTASNQPF LLGMTGRKVLQTLPRRLDSSVEWEPVREGGQMKLKTRYGNFLRANGGLPPWRNSVTHDVPHRTSTQDWVLWDVDVLEIQVHQSHTGHAPDLNKIMSHADS LDFESTSPTSLSIKSGNFSRQESSDSHVTSPRKSEGRTIYYHVADESGEVDDDATVGYSLNFKGNGVDELTQKLKEDTGLEDIVVCTRSPLNAKLYPLRL QLPPNNADMHVILVQSSSNAARDFAKPGVPL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G27100			Actin cross-linking protein (....		Potri.010G035100 [exp]	0	1
AT5G66850		MAPKKK5	mitogen-activated protein kina...		Potri.014G035500 [exp]	4.47	0.9054
AT2G40095			Alpha/beta hydrolase related p...		Potri.010G189600 [exp]	5.65	0.8877
AT2G31945			unknown protein		Potri.009G024300 [exp]	9.21	0.8709
AT1G30755			Protein of unknown function (D...		Potri.005G240300 [exp]	11.35	0.8800
AT2G38470	WRKY	ATWRKY33, WRKY3...	WRKY DNA-binding protein 33 (....		Potri.013G153400 [exp]	14.69	0.8742
AT4G30780			unknown protein		Potri.018G102800 [exp]	17.00	0.7345
AT2G23460		ATXLG1, XLG1	extra-large G-protein 1 (.1)		Potri.009G109400 [exp]	18.89	0.8564
AT4G05200		CRK25	cysteine-rich RLK (RECEPTOR-li...		Potri.011G028400 [exp]	20.78	0.8374
AT5G42050			DCD (Development and Cell Deat...		Potri.003G141900 [exp]	21.35	0.7906
AT5G42050			DCD (Development and Cell Deat...		Potri.001G088800 [exp]	21.72	0.7736

Compare expression of checked genes

Potri.010G035100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.