Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G69910 687 / 0 Protein kinase superfamily protein (.1) AT1G18390 302 / 1e-93 Protein kinase superfamily protein (.1.2) AT1G25390 269 / 3e-81 Protein kinase superfamily protein (.1) AT2G23450 269 / 1e-80 Protein kinase superfamily protein (.1.2) AT5G38210 258 / 9e-77 Protein kinase family protein (.1) AT5G66790 252 / 6e-75 Protein kinase superfamily protein (.1) AT1G66880 261 / 7e-75 Protein kinase superfamily protein (.1) AT5G02070 242 / 6e-71 Protein kinase family protein (.1) AT4G00330 217 / 5e-64 CRCK2 calmodulin-binding receptor-like cytoplasmic kinase 2 (.1) AT4G20450 226 / 1e-63 Leucine-rich repeat protein kinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G044750 [exp] 303 / 1e-93 AT1G18390 532 / 0.0 Protein kinase superfamily protein (.1.2) Potri.015G045101 [exp] 300 / 1e-92 AT1G18390 659 / 0.0 Protein kinase superfamily protein (.1.2) Potri.012G054725 [exp] 296 / 3e-91 AT1G18390 516 / 2e-176 Protein kinase superfamily protein (.1.2) Potri.004G096550 [exp] 295 / 1e-90 AT5G38210 594 / 0.0 Protein kinase family protein (.1) Potri.017G118100 [exp] 292 / 4e-89 AT5G38210 575 / 0.0 Protein kinase family protein (.1) Potri.017G118250 [exp] 285 / 8e-87 AT5G38210 542 / 0.0 Protein kinase family protein (.1) Potri.004G096900 [exp] 285 / 1e-86 AT5G38210 557 / 0.0 Protein kinase family protein (.1) Potri.010G120800 [exp] 284 / 1e-85 AT1G18390 525 / 2e-178 Protein kinase superfamily protein (.1.2) Potri.010G121100 [exp] 276 / 7e-84 AT1G25390 524 / 1e-179 Protein kinase superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036691 [exp] 682 / 0 AT1G69910 665 / 0.0 Protein kinase superfamily protein (.1) Lus10022432 [exp] 269 / 7e-81 AT1G18390 543 / 0.0 Protein kinase superfamily protein (.1.2) Lus10016737 [exp] 265 / 3e-79 AT1G18390 544 / 0.0 Protein kinase superfamily protein (.1.2) Lus10000741 [exp] 263 / 4e-78 AT2G23450 697 / 0.0 Protein kinase superfamily protein (.1.2) Lus10029132 [exp] 260 / 1e-77 AT1G18390 537 / 0.0 Protein kinase superfamily protein (.1.2) Lus10032741 [exp] 260 / 3e-77 AT2G23450 578 / 0.0 Protein kinase superfamily protein (.1.2) Lus10019657 [exp] 257 / 2e-76 AT2G23450 637 / 0.0 Protein kinase superfamily protein (.1.2) Lus10036376 [exp] 224 / 2e-66 AT4G00330 474 / 1e-166 calmodulin-binding receptor-like cytoplasmic kinase 2 (.1) Lus10014387 [exp] 227 / 8e-66 AT5G02070 493 / 8e-168 Protein kinase family protein (.1) Lus10009150 [exp] 221 / 2e-65 AT1G66880 365 / 1e-120 Protein kinase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF00069 [poplar] [flax] Pkinase Protein kinase domain CL0016 [poplar] [flax] PF14380 [poplar] [flax] WAK_assoc Wall-associated receptor kinase C-terminal
Representative CDS sequence Show only first row Show all	>Potri.010G035300.1 pacid=42799738 polypeptide=Potri.010G035300.1.p locus=Potri.010G035300 ID=Potri.010G035300.1.v4.1 annot-version=v4.1 ATGCCTCAGCAACCCCACCATTCCTTTCTTCTTCTCTCCATCTTGATGCTGATCTGTTCTCTATATAGCATTATTTCAGCAGATCCTCTGTTCCATGAAT GTACTTCAAAGCAAGATACATCTTTGAGATCTTCTTCATGCCCTCCATTCGCATCCACTTCTCCTCCTCCTTTCCCCTTCTCTTTATCACCTGGTTGTGG TCACCCTTTCTTTCAACTAAAATGCTCTTCTCCTCACTCCATAATCTCCATTAATAACCTCTCTTTTGCTCTCCTTCACTTCGACCCCAACTCCTCCTCT CTTCTTCTATCTCCTCAACTCTCCTCTTTAACATCCTCAACAACGATAAGACCCGCTGCTACTTGCTTTAGTGATCTTTCTTCCATTCCTGCCCATTCCA TCAATCTCTCCAGTTCACCATTTCGAGTTTCTGATTCTTATTGTTCTCGGCTTTCTGTTCTGCGCTCTTGTTCCCCACCAAATCTCCCAAACTGCAGCCA CTGTCCCTGGGAGTGTAAGCTCGTCAAGAACCCACTTAACCTCCTCAATGACTGTGGATCTGCTACTCCTCGTAGTCTCCAAAAGCAGGGATGTCAAACC GACATCTTAGAGTACCTTGACAATTTCTTGAAAATCGGGTTCCAAGTTGAGTACGATGAGTCTCAAGATTCCTTCTTCTCCAGCTGCAGGGAATGCAAAT CCAAGAAAGGAATTTGTGGCTTCAATTCCTCAGACCCAGAAAAGAATTTCTTTTGTTTTCAGTCCAGAACTCGGTTTTCACCTACATGGATTCACCAAAA TGACCCAAACCGAGTCGCCATTTTGTGCTCCATCTCCGCAGTGTTATGTCTTGTAATTGCCGTTTTGGTTTTTGGAATTGTTTTTAGGTTTAGGCGATTG AAATCATTGAAAACAGAAGACGACCCAACGACACTGTTCCTTCACCGCCACCGCTCTGCTAGTCTTCTCCCTCCTGCGTTCACCTTCGAGGAGCTTGAAT CCTCAACTAACAGGTTTGACCCCAAGCGTAAAATTGGAGATGGAGGGTTTGGGTCTGTGTATCTAGGCCAGCTCTCTGATGCCAGAATCGTTGCTGTTAA ATACCTCCACAGACACCACCAAGCTGCAGCCGCTGGCAGAGCATTTTCAACCAAGTCATTCTGCAACGAAATCTTGATATTATCTTCAATAAATCATTCA AATCTCGTTAAACTTCACGGGTATTGCAGTGATCCAAGAGGGTTACTTCTGGTGTATGACTACGTCCCCAACGGCACTCTCGCTGACCACCTCCATGGAA CAAACAACTTGCACCGTAAAAGTTCTTTAACGTGGCAAGTGAGGCTTGATATCGCATTGCAAACGGCTTTAGCTATAGAGTACTTGCATTTCTCAGTTAA ACCACCCATTGTTCACAGAGATATTACATCATCCAATATTTTTATAGAGAGAGATATGAGAATTAAAGTGGGTGATTTTGGGCTTTCAAGGCTTTTAGTC TTGCCTGAAACATCTTCATCTTCATCTGGGTATGTTTGTACCGGGCCTCAAGGCACACCTGGATACTTGGACCCGGATTACCACCGGTCGTTCCGGTTAA CAGAGAAGAGTGATGTTTACAGCTTTGGAGTGGTTTTGTTGGAGCTGGTTTCAGGTTTGAGGGCAGTGGACCAGAGTAGGGACAAGAGGGAGATGGCTTT GGCTGATCTTGTAGTATCCAAAATCCAAATGGGTCTGCTTCGTCAGGTTGTTGACCCTGTTTTAGGTGTTGATGAGGAAACTATGAACGGTATTGAATCC GTGGCTGAGCTGGCCTTCAGGTGTGTGGCGGCGGACAAGGATGATCGGCCAGATTCGAGGGAGGTTGTGGAGGAGCTGAGTCGGATTCGAAGCCGAACGA TTGGCATTAAGTAA
AA sequence Show only first row Show all	>Potri.010G035300.1 pacid=42799738 polypeptide=Potri.010G035300.1.p locus=Potri.010G035300 ID=Potri.010G035300.1.v4.1 annot-version=v4.1 MPQQPHHSFLLLSILMLICSLYSIISADPLFHECTSKQDTSLRSSSCPPFASTSPPPFPFSLSPGCGHPFFQLKCSSPHSIISINNLSFALLHFDPNSSS LLLSPQLSSLTSSTTIRPAATCFSDLSSIPAHSINLSSSPFRVSDSYCSRLSVLRSCSPPNLPNCSHCPWECKLVKNPLNLLNDCGSATPRSLQKQGCQT DILEYLDNFLKIGFQVEYDESQDSFFSSCRECKSKKGICGFNSSDPEKNFFCFQSRTRFSPTWIHQNDPNRVAILCSISAVLCLVIAVLVFGIVFRFRRL KSLKTEDDPTTLFLHRHRSASLLPPAFTFEELESSTNRFDPKRKIGDGGFGSVYLGQLSDARIVAVKYLHRHHQAAAAGRAFSTKSFCNEILILSSINHS NLVKLHGYCSDPRGLLLVYDYVPNGTLADHLHGTNNLHRKSSLTWQVRLDIALQTALAIEYLHFSVKPPIVHRDITSSNIFIERDMRIKVGDFGLSRLLV LPETSSSSSGYVCTGPQGTPGYLDPDYHRSFRLTEKSDVYSFGVVLLELVSGLRAVDQSRDKREMALADLVVSKIQMGLLRQVVDPVLGVDEETMNGIES VAELAFRCVAADKDDRPDSREVVEELSRIRSRTIGIK

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G69910			Protein kinase superfamily pro...		Potri.010G035300 [exp]	0	1
AT3G46550		FLA4, SOS5	salt overly sensitive 5, fasci...		Potri.018G097000 [exp]	7.41	0.7447
AT4G28760			Protein of unknown function (D...		Potri.002G253600 [exp]	12.48	0.7582
AT4G01210			glycosyl transferase family 1 ...		Potri.002G166100 [exp]	13.41	0.7393
AT1G25510			Eukaryotic aspartyl protease f...		Potri.010G128200 [exp]	19.23	0.7331
AT3G53380			Concanavalin A-like lectin pro...		Potri.016G087800 [exp]	20.78	0.7679
AT5G10200			ARM-repeat/Tetratricopeptide r...		Potri.005G076300 [exp]	25.41	0.6989
AT5G58300			Leucine-rich repeat protein ki...		Potri.019G131500 [exp]	42.60	0.7205
AT1G12380			unknown protein		Potri.012G129100 [exp]	44.27	0.6782
AT1G31420		FEI1	FEI 1, Leucine-rich repeat pro...		Potri.001G129000 [exp]	44.89	0.6310
AT4G38430		ATROPGEF1, ROPG...	rho guanyl-nucleotide exchange...		Potri.004G179742 [exp]	51.20	0.6917

Compare expression of checked genes

Potri.010G035300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.