Plant FIBer expression Database

Potri.010G035400 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G27150 586 / 0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
AT1G27110 498 / 2e-174 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2), Tetratricopeptide repeat (TPR)-like superfamily protein (.3)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10037232
[exp]
593 / 0 AT1G27150 592 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Lus10036690
[exp]
407 / 6e-140 AT1G27150 408 / 1e-140 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Lus10036324
[exp]
264 / 7e-86 AT1G27150 276 / 6e-91 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
PFAM info
Representative CDS sequence
>Potri.010G035400.1 pacid=42800308 polypeptide=Potri.010G035400.1.p locus=Potri.010G035400 ID=Potri.010G035400.1.v4.1 annot-version=v4.1
ATGGAAGGTGGTGTTAAATTGGACAATTGGGGTTACGAGGTCAACACTTCCTCGGATGCTTGCATCTCTGCCATCAACTCTTATTACCACCAGGTTCTTA
GTTATGGAAGAGAGAGGCGTGTGATTTTGGAAGCTACACTTCATGACAAAGACTGCGTGTTAGCCAATATTCTGGCAGCTCATTTCCTCTGCTCCTCTGC
CAATCCTTCCCGAGCTTCTTTCCATATCCAGGCTGCAAACTCTCGACTTGAAGAAGCCACCCCTTATGAGAAAGCAGTTTTTGATGCTCTTAATTCTTTG
ATTTGTGAGAATAGAGATGATGATGTTGCTCTTCAATTTCATTCTAAGCTCCTCAATGATTACCCAAGAGATCTAGTTACTCTTAAAAGAGCTCAAGTTT
TATGTTTCTACATGGGTAGACCTGACCTGTCCCTGGACCTTGTGCAACAGGTTCTACCCAGAAACCAAGAAGAAGATTATATATATGGCATGCTTGCATT
TTCGTTATTAGAGCTGGGCCGAATGGCTGATGCTGAGGAAGCAGCAAGAAAGGGATATGAGATCAACAAGCAAGATTACTGGGCGCAACATGCTATGTGT
CATGTCCTTCAGTATCAATGCCGTTTCAAAGATGCAGTAGACTTCATGGAAGAATGCTCATCTTCATGGAGTTCTTGCTTGTCATTCATGCTGACACATA
ATTGGTGGCATGTTGCTCTTTGTTACTTGGAAGGTCATGCTCCGGTGAGAAAAGTTTTAGAAGTTTATGACCAACATATCTGGAAAGAGTTGGAAAAAGC
TGATGCTGTGCCTCCAGAAGTGTACTTGAATGCTCTGGGTTTGTTGTTGCGTGTGTATCTAAGGGGTGAGCTTGACATCTTTGATGACCGTCTGAAGACT
TTAGCTTCCTGCATAACGGATCAAGCCAACTGGTATTTAGAGTGGCACCTTGATGTGTTGATATTATGGGCCTTGGCTAAAACTGGTGAACCTTCAAAGG
CAGAAGATTTACTTGAGGGCTTGAAATCCAGAATTCAAAAGATGAGCAAGAAGAAGCAACAAAGAATGCAGAAAGTGATTCGGCTTGCAGAAGCCTTATT
CGAGTATGGGAGGGGTAATGACAAGCAGGCATTAGATTTACTTGATTCAGATTTTGATGCCAATGATTGTAAGATGCTTGGGGCATCAGATGAACAACTT
GATGTATTTAATGAAGTCTGGTACAGCATGTTACTAAATACTGGACAAGCCGCCAAGGCAATAGGAGTAATGGAGAAGCAGATCAAGAAGAGGGAAGGAA
CCCCATTCATGTGGCGCTTATTGGAGAGAGGCTATGCAATGACAGGCAGTCAGGAAGCAACAGTTGCTGGTGAGAAGGCTAGGGCCTTAGAAGCTGCACA
TTTTGTTCAGGTGGCATGA
AA sequence
>Potri.010G035400.1 pacid=42800308 polypeptide=Potri.010G035400.1.p locus=Potri.010G035400 ID=Potri.010G035400.1.v4.1 annot-version=v4.1
MEGGVKLDNWGYEVNTSSDACISAINSYYHQVLSYGRERRVILEATLHDKDCVLANILAAHFLCSSANPSRASFHIQAANSRLEEATPYEKAVFDALNSL
ICENRDDDVALQFHSKLLNDYPRDLVTLKRAQVLCFYMGRPDLSLDLVQQVLPRNQEEDYIYGMLAFSLLELGRMADAEEAARKGYEINKQDYWAQHAMC
HVLQYQCRFKDAVDFMEECSSSWSSCLSFMLTHNWWHVALCYLEGHAPVRKVLEVYDQHIWKELEKADAVPPEVYLNALGLLLRVYLRGELDIFDDRLKT
LASCITDQANWYLEWHLDVLILWALAKTGEPSKAEDLLEGLKSRIQKMSKKKQQRMQKVIRLAEALFEYGRGNDKQALDLLDSDFDANDCKMLGASDEQL
DVFNEVWYSMLLNTGQAAKAIGVMEKQIKKREGTPFMWRLLERGYAMTGSQEATVAGEKARALEAAHFVQVA

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT1G27150 Tetratricopeptide repeat (TPR)... Potri.010G035400
[exp]
0 1
AT5G66560 Phototropic-responsive NPH3 fa... Potri.007G033900
[exp]
2.44 0.7928
AT2G27510 ATFD3 ferredoxin 3 (.1) Potri.008G020100
[exp]
2.82 0.7740 Pt-PETF.6
AT2G02250 ATPP2-B2 phloem protein 2-B2 (.1) Potri.018G016100
[exp]
4.24 0.7836
AT3G51670 SEC14 cytosolic factor family ... Potri.016G127700
[exp]
13.41 0.7149
AT3G22550 Protein of unknown function (D... Potri.010G085700
[exp]
13.74 0.7434
AT2G27040 OCP11, AGO4 OVEREXPRESSOR OF CATIONIC PERO... Potri.001G219700
[exp]
19.26 0.6768 AGO903,AGO4.1
AT5G40990 GLIP1 GDSL lipase 1 (.1) Potri.017G136501
[exp]
21.79 0.7567
AT2G42610 LSH10 LIGHT SENSITIVE HYPOCOTYLS 10,... Potri.004G057300
[exp]
22.80 0.6770
AT5G38410 Ribulose bisphosphate carboxyl... Potri.018G091401
[exp]
23.68 0.6779
AT1G21980 ATPIPK1, ATPIP5... phosphatidylinositol-4-phospha... Potri.019G015768
[exp]
23.93 0.7762

Potri.010G035400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.