Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G05670 922 / 0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1), Pentatricopeptide repeat (PPR-like) superfamily protein (.2) AT5G39710 347 / 2e-108 EMB2745 EMBRYO DEFECTIVE 2745, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT5G01110 333 / 4e-103 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT2G02150 325 / 4e-100 EMB2794 EMBRYO DEFECTIVE 2794, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G12620 308 / 3e-95 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G12300 306 / 3e-94 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G12775 298 / 5e-91 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT3G53700 300 / 1e-90 MEE40 maternal effect embryo arrest 40, Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G63080 286 / 9e-87 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT3G22470 286 / 1e-86 Pentatricopeptide repeat (PPR) superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G276500 [exp] 343 / 3e-107 AT5G01110 863 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.010G098400 [exp] 334 / 3e-103 AT2G02150 924 / 0.0 EMBRYO DEFECTIVE 2794, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.009G105600 [exp] 330 / 4e-102 AT5G39710 1022 / 0.0 EMBRYO DEFECTIVE 2745, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.005G046000 [exp] 324 / 2e-100 AT1G63130 405 / 9e-133 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.005G045000 [exp] 320 / 8e-100 AT1G12700 502 / 4e-170 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Potri.005G014500 [exp] 325 / 1e-99 AT1G09820 696 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Potri.005G038400 [exp] 317 / 3e-98 AT1G12700 478 / 7e-161 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Potri.005G046200 [exp] 316 / 4e-98 AT1G12700 501 / 5e-170 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Potri.004G147700 [exp] 309 / 3e-95 AT2G15630 736 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013283 [exp] 899 / 0 AT1G05670 785 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1), Pentatricopeptide repeat (PPR-like) superfamily protein (.2) Lus10027914 [exp] 328 / 4e-101 AT5G39710 1025 / 0.0 EMBRYO DEFECTIVE 2745, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10012068 [exp] 332 / 3e-100 AT5G39710 1028 / 0.0 EMBRYO DEFECTIVE 2745, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10007468 [exp] 323 / 1e-99 AT5G01110 808 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10027916 [exp] 324 / 2e-99 AT5G39710 1038 / 0.0 EMBRYO DEFECTIVE 2745, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10000364 [exp] 306 / 7e-93 AT1G22960 619 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10012037 [exp] 293 / 7e-89 AT2G15630 677 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10036020 [exp] 295 / 5e-88 AT5G61990 592 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10034616 [exp] 293 / 5e-88 AT1G22960 617 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10042016 [exp] 282 / 3e-85 AT2G32630 600 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [poplar] [flax] TPR PF13041 [poplar] [flax] PPR_2 PPR repeat family
Representative CDS sequence Show only first row Show all	>Potri.010G035700.1 pacid=42797019 polypeptide=Potri.010G035700.1.p locus=Potri.010G035700 ID=Potri.010G035700.1.v4.1 annot-version=v4.1 ATGAGGAGGTGTGCCGTTATTTTCTTGGGATATTCTTTTCCTCACTTTTCTTGTCATGCCTGCTTGGGTTTCTCTCCGATTCGTTTACCGTTCCTTGTTG GAAGATATTTGAGCCAAAGTCTTCATGCTTCATCCAATACCAGACCTTTTCCCAATTATTCTCCAAAAAAGCCCACCATTTTAGACGCTCAACTTGTTCA TCAAATCTCAAATGCAATAAAGTTGCGTCACTCTGAGCCCCTCCGGCACATTCTAAAACCGTATGAGTCCAAGTTTAGGTCTGACCACCTAATTTGGGTT CTCATGAACATCAGACATGATTATAAATTGGCTTTAGATTTCTTTGACTGGGCATGCCTGCGCAGAGACCCAAACCTTGAAGCCCGTTGCATAATTGTTC AGATTGCTGTGGCTTCAAAGGATCTAAAATTGGCTCATGATCTTATTTGTGATTTTTGGGCAATACCCAATTTGGATTTTGGTGTTTCATTCCCTCATTT TGTTGACCGGTTAATATACACTTACAAGGAATGGGGTTCAGACCCCCATGTATTCGATATTTTCTTTCAAGTCCTGATTGAAGTTGGGATGCTTGATGAA GCAAGAAGTTTTTTTGACAAGTTATTGAATTATGGAGTGGTTATCTCTACAGATTCTTGTAACTTATATCTCACACGCCTATCAGACAATTTTGATAGGC GTCGGATTTCTATAAAGGTATTCAATGAATTTCCTCAGGTTGGTGTCTGTTGGAATACTGCATCATGCAACATCATTATTAATTCTCTTTGTCGGTTAGG AAGAGTTAAAGAAGCCCATTGTTTGCTCATGCAAATGAAGTTTAGAGGCGATGCTCCTGATGTTGTAAGTTATAGTACTGTAATCAATGGGTATTGCCTT GGTGGGGAGCTGCAAAAGGTGCTGAAGCTCATCCAAGAAATGCAAATGAAGGGATTGAAGCCAAACTTATATACCTACAACAGCATAATCCTTCTTCTGT GTAAGAGTGGTAAAGTTGATGATGCTGAAAGGGTCTTGAGGGAGATGATAAACCAAGGAATAGTTCCCGACACCGTGGTCTACACAACTCTAATTGATGG TTTCTGCAAGTTAGGGAATATCCAAGCTGCTTACAAGTTGTTTGATGAAATGGAGAAGCAGAGAATTGTTCCTGATTTTATAGCATATACTGCTGTTATT TGTGGGCTTTGTAGATGTGGAAAGATGATGGAAGCAGATAAGGTCTTTAACAAAATGTTTAGCAGAGGAGTGGAACCAGATGAAGTTACATATACAACAC TTATTGATGGCTATTGTAAGTCAGGGGAGATGGAAAAGGCCTTTTCCCTTCACAACCAGATGGTCCAAAGTGGGCTGACTCCAAATGTTGTCACATACAC CGCACTTGCTGATGGCCTTTGTAAGCTTGGGCAGGTAGATACAGCAAACGAGCTCCTTCATGAAATGTGCGGAAAGGGTCTTCAATTGAATATCTGCACT TATAACTCACTTGTTAATGGCCTTTGTAAATCAGGAAATATCAGGCAAGCAGTAAAGTTGATGGAAGAAATGGAGGTGGCCGGGATGTATCCTGATACCA TTACTTTTACCACTTTAATGGATGCTTATTGTAAGACGGGGGAGATGGTTAAGGCTCATGAGCTTCTGCGGGAAATGCTGGATAGAGGACTTCAACCCAC AGTTATTACATTCAATGTGCTCATGAATGGGTTTTGTATGTCAGGAATGCTGGAAGATGGTGAGAGGCTACTAGCATGGATGTTGGAGAAGGGTATAATG CCAAATACCACCACCTACAATTCTCTTATGAAGCAGTACTGCATTAGAAATAATATGCGTTGCACGACAGAGATTTATAAGGGAATGTGTGCACGGGGAG TAATGCCTGATAGCAACACCTATAATATTTTGATAAAAGGGCATTGTAAAGCAAGGAATATGAAAGAAGCATGGTTTTTGCACAAAGAAATGGCTGAGAA GGGGTTTAATCTCACAGCTAGTTCTTACAACTCCATCATCAAGGGTTTTTTCAAGAAGAAAAAGATTTCAGAGGCTAGAGAACTATTTGAAGAGATGAGA AGAGAAGGGATGGCTGCTGATGCAGAAATATACAACCTTTTTGTGGATATAAGCTACGGAGAAGGGAACATGGAAACTGCACTTGAGCTCTGTGATGAAG CAATAGAGAATTGTTTTTTGAACAGAATCAAGAAAGAAAAGCAATAG
AA sequence Show only first row Show all	>Potri.010G035700.1 pacid=42797019 polypeptide=Potri.010G035700.1.p locus=Potri.010G035700 ID=Potri.010G035700.1.v4.1 annot-version=v4.1 MRRCAVIFLGYSFPHFSCHACLGFSPIRLPFLVGRYLSQSLHASSNTRPFPNYSPKKPTILDAQLVHQISNAIKLRHSEPLRHILKPYESKFRSDHLIWV LMNIRHDYKLALDFFDWACLRRDPNLEARCIIVQIAVASKDLKLAHDLICDFWAIPNLDFGVSFPHFVDRLIYTYKEWGSDPHVFDIFFQVLIEVGMLDE ARSFFDKLLNYGVVISTDSCNLYLTRLSDNFDRRRISIKVFNEFPQVGVCWNTASCNIIINSLCRLGRVKEAHCLLMQMKFRGDAPDVVSYSTVINGYCL GGELQKVLKLIQEMQMKGLKPNLYTYNSIILLLCKSGKVDDAERVLREMINQGIVPDTVVYTTLIDGFCKLGNIQAAYKLFDEMEKQRIVPDFIAYTAVI CGLCRCGKMMEADKVFNKMFSRGVEPDEVTYTTLIDGYCKSGEMEKAFSLHNQMVQSGLTPNVVTYTALADGLCKLGQVDTANELLHEMCGKGLQLNICT YNSLVNGLCKSGNIRQAVKLMEEMEVAGMYPDTITFTTLMDAYCKTGEMVKAHELLREMLDRGLQPTVITFNVLMNGFCMSGMLEDGERLLAWMLEKGIM PNTTTYNSLMKQYCIRNNMRCTTEIYKGMCARGVMPDSNTYNILIKGHCKARNMKEAWFLHKEMAEKGFNLTASSYNSIIKGFFKKKKISEARELFEEMR REGMAADAEIYNLFVDISYGEGNMETALELCDEAIENCFLNRIKKEKQ

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G05670			Pentatricopeptide repeat (PPR-...		Potri.010G035700 [exp]	0	1
AT2G15630			Pentatricopeptide repeat (PPR)...		Potri.004G147700 [exp]	1.00	0.9572
AT3G46740		MAR1, TOC75-III...	MODIFIER OF ARG1 1, translocon...		Potri.003G158100 [exp]	3.00	0.9371
AT2G15630			Pentatricopeptide repeat (PPR)...		Potri.009G109001 [exp]	3.46	0.9501
AT1G03540			Pentatricopeptide repeat (PPR-...		Potri.013G145000 [exp]	4.00	0.9471
AT2G37310			Pentatricopeptide repeat (PPR)...		Potri.006G216100 [exp]	5.00	0.9469
AT5G59200		OTP80	ORGANELLE TRANSCRIPT PROCESSIN...		Potri.002G239600 [exp]	5.47	0.9273
AT5G46100			Pentatricopeptide repeat (PPR)...		Potri.011G057900 [exp]	5.47	0.9419
AT2G03880		REME1	required for efficiency of mit...		Potri.004G208000 [exp]	5.91	0.9418
AT2G22410		SLO1	SLOW GROWTH 1 (.1)		Potri.001G019500 [exp]	6.32	0.9333
AT4G10620			P-loop containing nucleoside t...		Potri.001G010400 [exp]	6.63	0.9323

Compare expression of checked genes

Potri.010G035700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.