Plant FIBer expression Database

Pt-PER6.1 (Potri.010G036100) [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol Pt-PER6.1
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G24110 400 / 1e-140 Peroxidase superfamily protein (.1)
AT5G47000 380 / 1e-132 Peroxidase superfamily protein (.1)
AT4G17690 363 / 1e-125 Peroxidase superfamily protein (.1)
AT3G28200 362 / 1e-125 Peroxidase superfamily protein (.1)
AT5G40150 360 / 1e-124 Peroxidase superfamily protein (.1)
AT5G14130 269 / 7e-89 Peroxidase superfamily protein (.1)
AT4G37530 266 / 9e-88 Peroxidase superfamily protein (.1.2)
AT4G37520 261 / 9e-86 Peroxidase superfamily protein (.1.2)
AT5G67400 249 / 3e-81 RHS19 root hair specific 19 (.1)
AT2G18980 247 / 2e-80 Peroxidase superfamily protein (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.012G076500
[exp]
418 / 2e-147 AT4G17690 423 / 1e-149 Peroxidase superfamily protein (.1)
Potri.001G351000
[exp]
396 / 8e-139 AT3G28200 448 / 2e-159 Peroxidase superfamily protein (.1)
Potri.007G074700
[exp]
337 / 2e-115 AT5G47000 358 / 8e-124 Peroxidase superfamily protein (.1)
Potri.004G052100
[exp]
261 / 2e-85 AT2G34060 458 / 1e-162 Peroxidase superfamily protein (.1)
Potri.001G329200
[exp]
260 / 3e-85 AT4G37530 392 / 4e-137 Peroxidase superfamily protein (.1.2)
Potri.007G053400
[exp]
258 / 1e-84 AT5G67400 471 / 4e-168 root hair specific 19 (.1)
Potri.017G064100
[exp]
254 / 6e-83 AT5G67400 372 / 2e-129 root hair specific 19 (.1)
Potri.011G062300
[exp]
244 / 1e-78 AT2G34060 434 / 1e-152 Peroxidase superfamily protein (.1)
Potri.018G089900
[exp]
240 / 2e-77 AT4G30170 472 / 6e-169 Peroxidase family protein (.1)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10010716
[exp]
452 / 5e-161 AT1G24110 407 / 4e-143 Peroxidase superfamily protein (.1)
Lus10004234
[exp]
406 / 1e-142 AT1G24110 391 / 1e-136 Peroxidase superfamily protein (.1)
Lus10042144
[exp]
405 / 5e-142 AT1G24110 390 / 2e-136 Peroxidase superfamily protein (.1)
Lus10039445
[exp]
390 / 1e-136 AT5G40150 467 / 8e-167 Peroxidase superfamily protein (.1)
Lus10029201
[exp]
338 / 2e-117 AT1G24110 288 / 6e-98 Peroxidase superfamily protein (.1)
Lus10011079
[exp]
262 / 7e-86 AT4G37530 479 / 2e-171 Peroxidase superfamily protein (.1.2)
Lus10012540
[exp]
258 / 2e-84 AT5G14130 384 / 5e-134 Peroxidase superfamily protein (.1)
Lus10001442
[exp]
255 / 2e-83 AT4G30170 475 / 7e-170 Peroxidase family protein (.1)
Lus10013955
[exp]
249 / 1e-79 AT2G34060 451 / 1e-158 Peroxidase superfamily protein (.1)
Lus10005278
[exp]
249 / 6e-78 AT2G34060 441 / 3e-152 Peroxidase superfamily protein (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0617 Peroxidase PF00141 peroxidase Peroxidase
Representative CDS sequence
>Potri.010G036100.1 pacid=42799365 polypeptide=Potri.010G036100.1.p locus=Potri.010G036100 ID=Potri.010G036100.1.v4.1 annot-version=v4.1
ATGGCATCTCCTGGCCATAATCTCCTCATATTACTTCTTTTCTTCATGTCCTTTCCATGTTCAAAGTCCAGACTCTCCGTCGACTACTACAACAAAACAT
GCCCACAATTCGCTTCTATCATGGAACAGATCGTCTCGGACAAGCAAATTGCTAGCCCCACCACTGCTGCCGGCGTTCTTCGCCTCTTCTTCCACGACTG
CATGGTGGAAGGCTGTGATGGCTCCTTGCTCATCACCTCCACATCCTTCAACAAAGCTGAACGTGATGCTGACATCGACCAGTCCATCCCTGGAGATGCC
TATGACCTTGTCACTCGTGCGAAGACTGCCCTTGAGCTCCAGTGCCCCGGCATTGTCTCTTGTGCTGACATTCTAGCCACCGCTGCACGCAACCTTGTCA
CAATGGTGGGAGGTCCTTACTACCATGTGCGTCTAGGACGCAAAGATGGCCTGGTATCCAACGCCTCTCTTGTCCAAGGCAATATTGCTCAACCAACAAT
GCCATTGTCAGATATCATCTCCCTTTTTTATTCCAAAGGGTTTTCAGTGCAAGAAATGGTGGCTTTGGTCGGCGCTCATACGATAGGGTTTTCCCATTGC
AAAGAATTTAGTAACAGGCTTTTTAACTTCAGCAAGACTTCAGAGACTGACCCTGCATACAACCCCAAATATGCAGAAGGGCTAAGGAAATTGTGCGCAA
ATTACACGAAGGACCCAACTATGAGTGCTTATAATGACGTGATGACACCAGGGAAATTTGACAATATGTACTATAAAAATCTGCAGAGGGGGTTAGGGTT
GCTGTCAACAGATCAAGCCCTTTCTGTGGATAGGAGGACCAAGCCCTTCGTAGACTTGTATGCTGCAAATGAGACTGCATTCTTTGAAGCTTTTGCACAT
GGAATGGAGAAAGTTAGCATTTATAAGATCAAGACAGGGAAGAAGGGAGAGGTGAGGCATAGGTGCGACCAGTTCAACGCTGCCTAG
AA sequence
>Potri.010G036100.1 pacid=42799365 polypeptide=Potri.010G036100.1.p locus=Potri.010G036100 ID=Potri.010G036100.1.v4.1 annot-version=v4.1
MASPGHNLLILLLFFMSFPCSKSRLSVDYYNKTCPQFASIMEQIVSDKQIASPTTAAGVLRLFFHDCMVEGCDGSLLITSTSFNKAERDADIDQSIPGDA
YDLVTRAKTALELQCPGIVSCADILATAARNLVTMVGGPYYHVRLGRKDGLVSNASLVQGNIAQPTMPLSDIISLFYSKGFSVQEMVALVGAHTIGFSHC
KEFSNRLFNFSKTSETDPAYNPKYAEGLRKLCANYTKDPTMSAYNDVMTPGKFDNMYYKNLQRGLGLLSTDQALSVDRRTKPFVDLYAANETAFFEAFAH
GMEKVSIYKIKTGKKGEVRHRCDQFNAA

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

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Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT1G24110 Peroxidase superfamily protein... Potri.010G036100
[exp]
0 1 Pt-PER6.1

Potri.010G036100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.