Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G24120 565 / 0 ARL1 ARG1-like 1 (.1) AT1G68370 457 / 2e-160 ARG1 ALTERED RESPONSE TO GRAVITY 1, Chaperone DnaJ-domain superfamily protein (.1) AT1G59980 448 / 7e-157 GPS4, ARL2 ,ATDJC39 gravity persistence signal 4, ARG1-like 2 (.1) AT5G48030 76 / 1e-14 GFA2 gametophytic factor 2 (.1) AT5G03160 75 / 2e-14 ATP58IPK homolog of mamallian P58IPK (.1) AT3G08910 73 / 4e-14 DNAJ heat shock family protein (.1) AT5G06910 72 / 5e-14 ATJ6, EMB1393 J-domain protein 6 (.1) AT2G21510 72 / 7e-14 DNAJ heat shock N-terminal domain-containing protein (.1) AT5G01390 71 / 8e-14 DNAJ heat shock family protein (.1.2.3.4) AT2G20560 72 / 9e-14 DNAJ heat shock family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G193500 [exp] 678 / 0 AT1G24120 568 / 0.0 ARG1-like 1 (.1) Potri.008G123200 [exp] 459 / 4e-161 AT1G68370 670 / 0.0 ALTERED RESPONSE TO GRAVITY 1, Chaperone DnaJ-domain superfamily protein (.1) Potri.010G122300 [exp] 454 / 3e-159 AT1G68370 671 / 0.0 ALTERED RESPONSE TO GRAVITY 1, Chaperone DnaJ-domain superfamily protein (.1) Potri.009G065500 [exp] 76 / 1e-14 AT5G48030 504 / 1e-177 gametophytic factor 2 (.1) Potri.002G198000 [exp] 75 / 1e-14 AT3G62600 551 / 0.0 DNAJ heat shock family protein (.1) Potri.001G271300 [exp] 75 / 2e-14 AT5G48030 530 / 0.0 gametophytic factor 2 (.1) Potri.014G122600 [exp] 74 / 2e-14 AT3G62600 565 / 0.0 DNAJ heat shock family protein (.1) Potri.019G041400 [exp] 69 / 3e-14 AT5G16650 193 / 5e-65 Chaperone DnaJ-domain superfamily protein (.1) Potri.016G088600 [exp] 74 / 4e-14 AT5G03160 570 / 0.0 homolog of mamallian P58IPK (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029202 [exp] 599 / 0 AT1G24120 616 / 0.0 ARG1-like 1 (.1) Lus10010717 [exp] 575 / 0 AT1G24120 590 / 0.0 ARG1-like 1 (.1) Lus10030660 [exp] 571 / 0 AT1G24120 588 / 0.0 ARG1-like 1 (.1) Lus10030827 [exp] 537 / 0 AT1G24120 545 / 0.0 ARG1-like 1 (.1) Lus10005113 [exp] 455 / 2e-159 AT1G68370 688 / 0.0 ALTERED RESPONSE TO GRAVITY 1, Chaperone DnaJ-domain superfamily protein (.1) Lus10034344 [exp] 402 / 2e-138 AT1G68370 624 / 0.0 ALTERED RESPONSE TO GRAVITY 1, Chaperone DnaJ-domain superfamily protein (.1) Lus10035855 [exp] 76 / 1e-14 AT5G48030 524 / 0.0 gametophytic factor 2 (.1) Lus10020949 [exp] 75 / 1e-14 AT1G28210 407 / 2e-141 DNAJ heat shock family protein (.1.2) Lus10032100 [exp] 75 / 1e-14 AT3G62600 526 / 0.0 DNAJ heat shock family protein (.1) Lus10014584 [exp] 75 / 1e-14 AT3G62600 521 / 0.0 DNAJ heat shock family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0392 [poplar] [flax] Chaperone-J PF00226 [poplar] [flax] DnaJ DnaJ domain
Representative CDS sequence Show only first row Show all	>Potri.010G036200.8 pacid=42799090 polypeptide=Potri.010G036200.8.p locus=Potri.010G036200 ID=Potri.010G036200.8.v4.1 annot-version=v4.1 ATGCCGGCTCATCGATCGAAGCAGGATGAAGCAGCAAGGCAGGTGCGGCGAGACCCATACGAAGTTCTTGGCGTCTCCAGGAACTCCTCTGACCAGGAAA TTAAGTCCGCCTACCGTAAAATGGCTCTCAAGTACCATCCTGACAAAAATGCAAATGATCCTGAAGCAGCTGATATATTTAAAGAGGTTACATTTTCCTA TAATATATTGGCTGATCCAGACAAGAGACGCCAATATGACTCTGCTGGTTTTGAGGCTGTTGAATCAGAAAGTCAAGAACTTGAACTGGATCTTTCAAGT TTGGGAGCTGTGAATACTATGTTTGCGGCACTCTTTAGTAAACTTGGAGTACCAATTAAGACCACTATATCAGCAACTGTTTTGGAGGAGGCGCTTAATG GTGTGGTTGATATTCGTCCACTTTCACTTGGGGAACCTATTTCTAGGAAGGTTGAAAAGCAATGTGCTCACTTCTATTCTGTCACGATAACAGAAGAGGA GGCAAGGGCTGGATTTGTTTGTCGAGTGCAATCATCTGACAAAAGCAAGTTCAAGTTATTGTATTTTGATCAGGAAGAAAGTGGTGGAGGATTAAGCCTT GCTCTACAGGAAGACAGTGCTAAAACAGGAAAGGTTACATCTGCTGGAATGTACTTTCTATGTTTTCCTGTATACCGGCTGGATCACACTGTCAACTCTA TTGCAGCTGCAAAAGATGCTGATGCTGCTTTCTTCAAAAAATTGGATGGGTTTCAGCCATGTGAAATATCTGAACTGAAGGCTGGCACCCATGTTTTTGG TGTCTATGGTGACAATTTTTTTAAAAGTGCAAGTTACTCAATAGAAGCTCTTTGTGCCGCACCTTTTATGGAAGAAAAAGCTAATCTAAGAGCTGTTGAA GCTGAGATTCTTGGAAAGAGGGTAGAAATATCCAAGTTTGAAACTGAATATCGAGAGGTATTGGCACAATTTACCGAGATGACCAGTAGATATGCACAAG AGATGCAAGCAATTGATGAGCTTCTTAGACAAAGGAATGAAATTCATGCCTCCTACACCATTGCTCCACCAATGAAGCGGAGTTCAAGTAAAAGCAGGAA TAAGGGTCCCTTCAGGGAGACCAAAGAAGATGCACAAGTGAGAGATAAGAAACCTACAAGGGATAGATCTAAGAAGAAGAAATGGTTCAACATCCACTTA AAAGTTGACAAAAGAAAGCCTTGCTAA
AA sequence Show only first row Show all	>Potri.010G036200.8 pacid=42799090 polypeptide=Potri.010G036200.8.p locus=Potri.010G036200 ID=Potri.010G036200.8.v4.1 annot-version=v4.1 MPAHRSKQDEAARQVRRDPYEVLGVSRNSSDQEIKSAYRKMALKYHPDKNANDPEAADIFKEVTFSYNILADPDKRRQYDSAGFEAVESESQELELDLSS LGAVNTMFAALFSKLGVPIKTTISATVLEEALNGVVDIRPLSLGEPISRKVEKQCAHFYSVTITEEEARAGFVCRVQSSDKSKFKLLYFDQEESGGGLSL ALQEDSAKTGKVTSAGMYFLCFPVYRLDHTVNSIAAAKDADAAFFKKLDGFQPCEISELKAGTHVFGVYGDNFFKSASYSIEALCAAPFMEEKANLRAVE AEILGKRVEISKFETEYREVLAQFTEMTSRYAQEMQAIDELLRQRNEIHASYTIAPPMKRSSSKSRNKGPFRETKEDAQVRDKKPTRDRSKKKKWFNIHL KVDKRKPC

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G24120		ARL1	ARG1-like 1 (.1)		Potri.010G036200 [exp]	0	1
					Potri.016G052100 [exp]	2.00	0.9067
AT5G27020			unknown protein		Potri.013G011950 [exp]	2.23	0.8878
AT2G46550			unknown protein		Potri.005G071400 [exp]	2.64	0.9080
AT3G55530		SDIR1	SALT- AND DROUGHT-INDUCED RING...		Potri.009G034700 [exp]	2.82	0.8950
AT4G32330			TPX2 (targeting protein for Xk...		Potri.006G254400 [exp]	3.46	0.9002
AT1G56580		SVB	SMALLER WITH VARIABLE BRANCHES...		Potri.005G011200 [exp]	5.74	0.8753
					Potri.019G009900 [exp]	6.32	0.8765
AT5G22400			Rho GTPase activating protein ...		Potri.016G078200 [exp]	6.78	0.8159
AT1G15740			Leucine-rich repeat family pro...		Potri.006G061700 [exp]	7.34	0.8120
AT2G01910		ATMAP65-6	Microtubule associated protein...		Potri.008G139700 [exp]	8.00	0.8593

Compare expression of checked genes

Potri.010G036200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.