Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G51980 592 / 0 Insulinase (Peptidase family M16) protein (.1), Insulinase (Peptidase family M16) protein (.2) AT3G16480 561 / 0 MPPALPHA mitochondrial processing peptidase alpha subunit (.1) AT3G02090 175 / 1e-48 MPPBETA Insulinase (Peptidase family M16) protein (.1), Insulinase (Peptidase family M16) protein (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G193200 [exp] 879 / 0 AT1G51980 592 / 0.0 Insulinase (Peptidase family M16) protein (.1), Insulinase (Peptidase family M16) protein (.2) Potri.001G191100 [exp] 634 / 0 AT1G51980 620 / 0.0 Insulinase (Peptidase family M16) protein (.1), Insulinase (Peptidase family M16) protein (.2) Potri.004G118900 [exp] 174 / 4e-48 AT3G02090 822 / 0.0 Insulinase (Peptidase family M16) protein (.1), Insulinase (Peptidase family M16) protein (.2) Potri.017G092400 [exp] 170 / 1e-46 AT3G02090 832 / 0.0 Insulinase (Peptidase family M16) protein (.1), Insulinase (Peptidase family M16) protein (.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035000 [exp] 738 / 0 AT1G51980 631 / 0.0 Insulinase (Peptidase family M16) protein (.1), Insulinase (Peptidase family M16) protein (.2) Lus10025839 [exp] 641 / 0 AT1G51980 643 / 0.0 Insulinase (Peptidase family M16) protein (.1), Insulinase (Peptidase family M16) protein (.2) Lus10038262 [exp] 637 / 0 AT1G51980 637 / 0.0 Insulinase (Peptidase family M16) protein (.1), Insulinase (Peptidase family M16) protein (.2) Lus10012926 [exp] 600 / 0 AT3G16480 504 / 3e-173 mitochondrial processing peptidase alpha subunit (.1) Lus10040886 [exp] 167 / 2e-45 AT3G02090 869 / 0.0 Insulinase (Peptidase family M16) protein (.1), Insulinase (Peptidase family M16) protein (.2) Lus10004939 [exp] 166 / 4e-45 AT3G02090 869 / 0.0 Insulinase (Peptidase family M16) protein (.1), Insulinase (Peptidase family M16) protein (.2) Lus10040885 [exp] 166 / 5e-45 AT3G02090 869 / 0.0 Insulinase (Peptidase family M16) protein (.1), Insulinase (Peptidase family M16) protein (.2) Lus10004938 [exp] 93 / 1e-20 AT3G02090 546 / 0.0 Insulinase (Peptidase family M16) protein (.1), Insulinase (Peptidase family M16) protein (.2) Lus10012918 [exp] 44 / 0.0003 AT5G56730 1501 / 0.0 Insulinase (Peptidase family M16) protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0094 [poplar] [flax] Peptidase_ME PF00675 [poplar] [flax] Peptidase_M16 Insulinase (Peptidase family M16) CL0094 [poplar] [flax] Peptidase_ME PF05193 [poplar] [flax] Peptidase_M16_C Peptidase M16 inactive domain
Representative CDS sequence Show only first row Show all	>Potri.010G036700.1 pacid=42798321 polypeptide=Potri.010G036700.1.p locus=Potri.010G036700 ID=Potri.010G036700.1.v4.1 annot-version=v4.1 ATGTATAGAAGCGCAGTTTCGCGTCTCAGAGCTCCTAAGGGCTGCCGTAGGTATCCAACAAGATTTGCAAGTTCGAGTGCAACTGCCTTGCAACCATCCT CTTCCAGTGGTTTCTTCAGCTGGCTTACTGGTGAAAAGTCCAAGTCTGTTCCACCTCTAGACTTTCCACTTGTAGGAGTTGAACTCCCTTCTACATTGCC TGATTATGTTGAACCTGGTGTAACTAAGATTACTACGCTTGGTAATGGCTTGCGAATTGCATCTGAAACATCACCGAATCCCGCGGCATCAATAGGGTTA TATGTTGACTGCGGCTCAATATATGAGTCGCCAGCAACATTTGGGGCCACCCACGTTCTGGAACGAATGGCATTCAAAAGCACAAGAAACCGCAGCCACT TGCGTGTTGTGCGAGAAGTGGAAGCAATTGGGGGTTCTGTACAATCCTCAGCATCTCGGGAGCAGATGGGATATACATATGATGCTTTGAAGACTTATCT TCCAGAGATGGTTGAGCTACTTATTGATTGTGTGAGGAACCCTGTCTTCCTTGATTGGGAGTTCAATGAACAGCTTCAGAAGGTGAAGGCTGAGATCAGT GAAGCTTCAAAAAACCCTCAAGGTTTGCTTTTTGAGGCAATTCACTCGGCAGGTTTTTCTGGTGCTTTGGCAAATCCTCTTTTAGCTCCAGAATCTTCAA TAGATAGATTGAATAGTTCACTCTTGGAGGAATTTGTAGCTGAAAATTATACTGCTCGTCGTATGGTGCTTGCAGCTTCTGGTGTTGAACACGAGGAACT GGTAGCTATTGCAGAGCCCCTTTTATCTGACCTATCTGATAAAAAGAGCCCCGGAGAGCCAGAATCTGTTTATACTGGTGGTGATTTCCGTTGTCAAGCT GAATCAGGGGACCAGAAAACCCATTTTGCTCTCGCATTTGGACTAAAAGGTGGCTGGCATGATGTGAAGGAGGCCATGACTTTGACAGTTCTTCAGATTC TAATGGGAGGTGGTGGATCATTCTCAGCTGGTGGCCCTGGGAAAGGAATGTATTCAAGGCTATATCAACGTGTTTTGAATCAGTATCACAAAGTTCAGTC GTTTTCAGCATTCAGCCACATTTACAATCACTCTGCCATATTCGGTATCCAAGCTACCACAGATGCAGATTTTGCATCATCGGCCATTAAGCTAGCAGCT AGAGAGCTAACTGAAGTTGCTTCACCTGGTGCAGTTGACCCAGTGCAGCTACAACGTGCCAAACAGTCAACAAAGTCTGCCATTTTGATGAATTTGGAAT CTAGAATGGTTGCTTCGGAAGATATTGGTAGACAAATTTTGATGTATAACAAGAGGAAACCGTTGGGTGATTTCTTGAAAGCGATAGATGAGGTTACATT GCAGGATATTACCCAAATTTCCCAAAAGCTTATTTCTTCACCTCTCACAATGGCATCATACGGAGAAGTTATCAATGTCCCAACATATGATACAATCTGC AGCATGTTCAAGTCAAAATGA
AA sequence Show only first row Show all	>Potri.010G036700.1 pacid=42798321 polypeptide=Potri.010G036700.1.p locus=Potri.010G036700 ID=Potri.010G036700.1.v4.1 annot-version=v4.1 MYRSAVSRLRAPKGCRRYPTRFASSSATALQPSSSSGFFSWLTGEKSKSVPPLDFPLVGVELPSTLPDYVEPGVTKITTLGNGLRIASETSPNPAASIGL YVDCGSIYESPATFGATHVLERMAFKSTRNRSHLRVVREVEAIGGSVQSSASREQMGYTYDALKTYLPEMVELLIDCVRNPVFLDWEFNEQLQKVKAEIS EASKNPQGLLFEAIHSAGFSGALANPLLAPESSIDRLNSSLLEEFVAENYTARRMVLAASGVEHEELVAIAEPLLSDLSDKKSPGEPESVYTGGDFRCQA ESGDQKTHFALAFGLKGGWHDVKEAMTLTVLQILMGGGGSFSAGGPGKGMYSRLYQRVLNQYHKVQSFSAFSHIYNHSAIFGIQATTDADFASSAIKLAA RELTEVASPGAVDPVQLQRAKQSTKSAILMNLESRMVASEDIGRQILMYNKRKPLGDFLKAIDEVTLQDITQISQKLISSPLTMASYGEVINVPTYDTIC SMFKSK

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G51980			Insulinase (Peptidase family M...		Potri.010G036700 [exp]	0	1
AT3G15020		mMDH2	mitochondrial malate dehydroge...		Potri.011G096300 [exp]	3.00	0.8618
AT3G26340			N-terminal nucleophile aminohy...		Potri.008G177000 [exp]	5.47	0.8345	Pt-PBE1.2
AT5G40810			Cytochrome C1 family (.1.2)		Potri.009G165000 [exp]	9.16	0.8284
AT2G05840		PAA2	20S proteasome subunit PAA2 (....		Potri.006G140400 [exp]	10.48	0.8426
AT5G16660			unknown protein		Potri.019G041700 [exp]	16.43	0.8102
AT5G09570			Cox19-like CHCH family protein...		Potri.001G282900 [exp]	17.32	0.8019
AT3G27430		PBB1	N-terminal nucleophile aminohy...		Potri.004G066000 [exp]	17.66	0.8033	Pt-PBB1.2
AT5G59613			unknown protein		Potri.010G207600 [exp]	19.44	0.8396
AT5G08690			ATP synthase alpha/beta family...		Potri.010G116600 [exp]	26.38	0.8326	PtrAtpB_1,ATP.1
AT5G23540			Mov34/MPN/PAD-1 family protein...		Potri.002G127900 [exp]	28.24	0.8107

Compare expression of checked genes

Potri.010G036700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.