Plant FIBer expression Database

Potri.010G037600 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G70150 448 / 1e-157 zinc ion binding (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.011G001800
[exp]
144 / 1e-37 AT4G21890 350 / 3e-117 unknown protein
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10010722
[exp]
469 / 5e-166 AT1G70150 473 / 1e-167 zinc ion binding (.1)
Lus10029210
[exp]
430 / 2e-150 AT1G70150 429 / 3e-150 zinc ion binding (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0175 TRASH PF01753 zf-MYND MYND finger
Representative CDS sequence
>Potri.010G037600.3 pacid=42799038 polypeptide=Potri.010G037600.3.p locus=Potri.010G037600 ID=Potri.010G037600.3.v4.1 annot-version=v4.1
ATGGAGTGCGCCGGAAAGGGGCGTGGAACTCGGTGTATGGGCTCAGCTCGCAGACGCTGCGGTCGCTGTGGCGCAGTTGCTTATTGCTCGGTCTCTCATC
AGATGTCGCACTGGAATGAGCATAAAGAAGAGTGTGAAAGATTAGAGCAACAAATGAAGCGTGTAGATGTCTTAAATGATTTCCCTTTTACTTTTTCTCA
AGAAGCTACAGCCACTTCTCAGGTGTGTGAAAAACCAGGGAGTAGGTGTTCATTCCTGAGCAAAAGAGGCATCCATCAACTTGGAATGTGGATGCATGAA
TGCTGCTGCTTTGACTCTGAGGAGGCAACATCATCACTAGCTTCCTTTGATTCTTTGAGGTCAAAGGATGGTGGTTGGAATCTCTTAGGTGACCTATGCC
CGTGCCATGGGCCCATATCTCCAATATCAGAATGTTTAAGCAGTTGGTTTGATTACTATGAGTGGAGGTGCATTCCTCTTCATTCACCCGTTGCTTTACT
TCTTCACTGGCCACTTACAATTTACCATGCTGCTCATATTGCTTGTGCATGGAGCTCGACTGTTGAAACTCGTAAACTGTGCATACACTATCTTGGGCCT
GAAAAGGAGCTTCTACAACTTGCTGCCTTTGGAGAGTTGCTTGCTCTGTTCCCTGGTGTGCAAGTTCATATAGAGTTTATTGGACCTGCAATTCCACAAC
AAAGGGATGGTGAGAAGATTATTCTATGTAGTTATGCTCGATGCCTGGATGCAGATTGCATTTGCAATTTTTCAAGTGAGAATCTCAGCCAGATTGCAAT
CACCAGTAAATCTACATCAGTGACCCTACAGCTTCGCAGCGGATTATACCATGAACGTTACAGGGATTTAGCTGAGGATTTGTTTCCTCATTTAATAATT
GCTCCAAATGCTGGAATTGCTGCTTATCCTAGCTGGTTGCCTACCATTGAACTGATAAAGGAGATGAATGTCCCGGCTATATTTTCTGATTATTGTGAAG
AAGCCTGTCATCTAGCTGCCTGCTGCATAAAAAGTGTAACTGGTCGTTCTCTCTCACTTCCGATTCAATTAAATCCTTTCAGGCAGCCAATGATGGTGGA
AGATAGTGCCCTGCTTCTTCCCTGCTATTCAAATTGCTTTCTGTTTGGGATTTGA
AA sequence
>Potri.010G037600.3 pacid=42799038 polypeptide=Potri.010G037600.3.p locus=Potri.010G037600 ID=Potri.010G037600.3.v4.1 annot-version=v4.1
MECAGKGRGTRCMGSARRRCGRCGAVAYCSVSHQMSHWNEHKEECERLEQQMKRVDVLNDFPFTFSQEATATSQVCEKPGSRCSFLSKRGIHQLGMWMHE
CCCFDSEEATSSLASFDSLRSKDGGWNLLGDLCPCHGPISPISECLSSWFDYYEWRCIPLHSPVALLLHWPLTIYHAAHIACAWSSTVETRKLCIHYLGP
EKELLQLAAFGELLALFPGVQVHIEFIGPAIPQQRDGEKIILCSYARCLDADCICNFSSENLSQIAITSKSTSVTLQLRSGLYHERYRDLAEDLFPHLII
APNAGIAAYPSWLPTIELIKEMNVPAIFSDYCEEACHLAACCIKSVTGRSLSLPIQLNPFRQPMMVEDSALLLPCYSNCFLFGI

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT1G70150 zinc ion binding (.1) Potri.010G037600
[exp]
0 1
AT3G20870 ZTP29 zinc transporter 29, ZIP metal... Potri.001G018800
[exp]
3.74 0.8494
AT2G32950 FUS1, EMB168, D... FUSCA 1, EMBRYO DEFECTIVE 168,... Potri.014G159300
[exp]
4.47 0.8371 COP1.1
AT1G12700 RPF1 RNA processing factor 1, ATP b... Potri.005G050300
[exp]
6.00 0.8384
AT3G48480 Cysteine proteinases superfami... Potri.010G180300
[exp]
6.40 0.8563
AT1G12700 RPF1 RNA processing factor 1, ATP b... Potri.005G050180
[exp]
9.16 0.8263
AT5G18260 RING/U-box superfamily protein... Potri.013G060900
[exp]
13.63 0.8406
AT5G14220 HEMG2, MEE61, P... MATERNAL EFFECT EMBRYO ARREST ... Potri.001G333500
[exp]
13.85 0.8101
AT3G20740 FIE1, FIS3, FIE FERTILIZATION-INDEPENDENT ENDO... Potri.001G417300
[exp]
16.58 0.7961 FIE.1,PGE901
AT1G71210 Pentatricopeptide repeat (PPR)... Potri.004G229100
[exp]
19.36 0.8065
Potri.005G045300
[exp]
19.41 0.8095

Potri.010G037600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.