Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G70140 489 / 4e-162 ATFH8 formin 8 (.1) AT1G59910 435 / 1e-139 Actin-binding FH2 (formin homology 2) family protein (.1) AT1G24150 403 / 2e-129 ATFH4, FH4 formin homologue 4 (.1) AT5G67470 300 / 5e-89 ATFH6 ARABIDOPSIS FORMIN HOMOLOG 6, formin homolog 6 (.1) AT3G05470 295 / 4e-87 Actin-binding FH2 (formin homology 2) family protein (.1) AT5G54650 295 / 5e-87 ATFH5, Fh5 FORMIN HOMOLOGY 5, formin homology5 (.1.2) AT4G15200 281 / 3e-83 AFH3 formin 3 (.1.2) AT3G25500 286 / 5e-83 AHF1, AFH1, ATFH1 ARABIDOPSIS THALIANA FORMIN HOMOLOGY 1, formin homology 1 (.1) AT2G43800 276 / 3e-80 Actin-binding FH2 (formin homology 2) family protein (.1) AT5G48360 200 / 5e-54 Actin-binding FH2 (formin homology 2) family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G192900 [exp] 659 / 0 AT1G70140 499 / 2e-166 formin 8 (.1) Potri.015G069800 [exp] 498 / 2e-165 AT1G70140 484 / 3e-160 formin 8 (.1) Potri.007G054900 [exp] 321 / 1e-96 AT5G67470 684 / 0.0 ARABIDOPSIS FORMIN HOMOLOG 6, formin homolog 6 (.1) Potri.013G017900 [exp] 320 / 6e-96 AT3G05470 648 / 0.0 Actin-binding FH2 (formin homology 2) family protein (.1) Potri.001G416100 [exp] 309 / 6e-92 AT5G54650 623 / 0.0 FORMIN HOMOLOGY 5, formin homology5 (.1.2) Potri.005G026300 [exp] 308 / 1e-91 AT3G05470 652 / 0.0 Actin-binding FH2 (formin homology 2) family protein (.1) Potri.007G140200 [exp] 302 / 2e-89 AT3G25500 654 / 0.0 ARABIDOPSIS THALIANA FORMIN HOMOLOGY 1, formin homology 1 (.1) Potri.007G119900 [exp] 300 / 5e-89 AT5G54650 578 / 0.0 FORMIN HOMOLOGY 5, formin homology5 (.1.2) Potri.002G240232 [exp] 302 / 1e-88 AT3G25500 610 / 0.0 ARABIDOPSIS THALIANA FORMIN HOMOLOGY 1, formin homology 1 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029212 [exp] 532 / 0 AT1G70140 491 / 6e-168 formin 8 (.1) Lus10010724 [exp] 461 / 8e-154 AT1G70140 442 / 2e-147 formin 8 (.1) Lus10004244 [exp] 389 / 7e-127 AT1G70140 396 / 6e-130 formin 8 (.1) Lus10042154 [exp] 373 / 3e-121 AT1G70140 377 / 1e-123 formin 8 (.1) Lus10004505 [exp] 337 / 4e-103 AT3G05470 628 / 0.0 Actin-binding FH2 (formin homology 2) family protein (.1) Lus10031496 [exp] 311 / 7e-94 AT3G05470 608 / 0.0 Actin-binding FH2 (formin homology 2) family protein (.1) Lus10029897 [exp] 311 / 7e-94 AT3G05470 618 / 0.0 Actin-binding FH2 (formin homology 2) family protein (.1) Lus10025195 [exp] 311 / 5e-93 AT5G67470 642 / 0.0 ARABIDOPSIS FORMIN HOMOLOG 6, formin homolog 6 (.1) Lus10015175 [exp] 309 / 5e-93 AT3G05470 635 / 0.0 Actin-binding FH2 (formin homology 2) family protein (.1) Lus10019298 [exp] 311 / 1e-92 AT5G67470 826 / 0.0 ARABIDOPSIS FORMIN HOMOLOG 6, formin homolog 6 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF02181 [poplar] [flax] FH2 Formin Homology 2 Domain
Representative CDS sequence Show only first row Show all	>Potri.010G037900.1 pacid=42798214 polypeptide=Potri.010G037900.1.p locus=Potri.010G037900 ID=Potri.010G037900.1.v4.1 annot-version=v4.1 ATGGCTGTCATTAAACAGCCATGGCTTGTTCTCCATCTAATGTTTTTCCTCTCTGTCATCCCTTTCTCTTCTTCCCAATCCATTTCCCCTCAAAATATTG AGACTTTCTATCCATTTCCGATTCCATCTCCTGCCCCACCGCTTCCATCTCCTGCCCCACCGCCAAAACCCTCTACTTCTCCGAACCCTACTATATTGAG TCCATCAGCGTCAGGTCCTTTGCCTTCGTCTTCATCGAACAGAAACGTTGTCAAGGCAGTAGCTGCAACTGCTGCGAGCACCTTTGTCGTTGCTACTTTG CTTTTTTTCTTGATCCAAAGGTTCGTAATCCTTCCTCGAAGGAAAAGTAATGGACATGGTACTGGTTCTAGAGGAGGTCAGGCAGTGGTGCCTCTGCCTC TGCCTCCTAGTCAATTTTCTCGAATCGAAGGGAATGTTAAAGGATTGGTTGTTGATGAGAATGGATTGGATGTGCTGTACTGGAGAAAACTTGAAGAAGA AGATAAGAAAAACAGTTTTGTCAGAGAAGAACGCAGGAGGAATTCTAAGTCTGAGCCTATACAAGAAATTCCATTGCTTCGAGGAAAATCTTCAACTTCT GAGAAAAAAGTTGTGCCAGAAACAACAATTCCTACTGTCAGCCATCAATTTGTCAAGGCCATTGAAAAACAAATTTTAACAAGTCAACCATCAAATTCAA ATCTTCCCCTTACCCTGTCTCCAGCGCCGCCGCCGCCACTACAATCTTCAATGGCAATTCCAAACAAGCAAGTTCCTGCACCGCCTCCACCTCCTACAAT CCCAGCAAAGAAAAATCAGCCGCCGCCGCCTCCACCACCACCCAAGGCAGCATCTTCAAATCTTCCTCCATTGCAAAAAGGGAACCCAAGTAAAGGTGAA TCAGGGGAGTCTTCAACTGGACAAGGCAGTACTACAGCAGCAGCTGGGAATGGCCAGGTAAAACTGAAGCCGTTGCACTGGGATAAGGTGAACACGAATG CTGGCCAGTCCATGGTGTGGGACAAAATCGATGGTGGCTCTTTTAGGGTTGATGATAATCTTATGGAAGCCCTCTTCGGATTCGTAGCCACCAACAGGAA ATCCCCAAAAAGTGAGAGCAACTCGAGCAATTCAAATAATCTTATTTCCAGTTCATCAGCACAAATTGTTATTCTTGATGCCCGAAAATCCCAGAACATG GCAATTGTTCTCAAGTCTCTGGCCATCTCTCGCAGTGAGCTCCTTGATGCATTGACTAATGGCCAAGGTCTAAGTGTAGATACTCTTGAAAAGCTTATGA GAATTGCTCCAACCAAAGAGGAAGAATCCCAAATCCTTGAATTCGGGGGAGACACTACTAGACTGGCTGATGCTGAGTCCTTCTTCTACCATCTTCTGAA AGCTGTTCCAACAGCATTTAGTCGTATTAATGCCATGCTTTTCAGATCAACTTATGATGCAGAGATTCTTCACTTCAAGGAATCTTTACAAATACTTGAA TCAGGATGCAAGGAACTTCGAAATCGAGGACTCTTTATCAAACTTCTGGAAGCAATTCTCAAGGCTGGTAATCGCATGAACGCTGGAACTTCTAGAGGAA ATGCGCAAGCTTTCAAACTAACTTCACTAGGAAAGCTATCTGATGTTAAAAGCATGGATGGAAAAACTACTTTACTTCACTTTGTCGTGGAAGAAGTAGT CCGAACTGAAGGAAAACGTTGCGTTCTTAATCGAAATCGTAGCTTGAGTCGAAACAGCAGCCAAAGAAGCAACAGCAGTGTGATTTCTGAGGATTCAGCG TCAAAAGGAGAGAGAGAGAAGGAATATATGATGCTGGGATTACCTGCGGTAGGAGGGCTCAGCATTGAATTCTCTAATGTTAAGAAAGCAGCCCAAATAG ATTATGATACCTTTGCTGCTACTTGCTCAGCTCTCGCAACAGGTGCAAGAGAAGTTAGGGCATTTATGTCACAATGTGCTGCTGCTAACGGAGAAGGGGG GTTTGTAAGGGAAATGAAAGGTTTTCTTGAAGCAGCTGAGGAAGAACTAAAGGGTTTGACTCAAGAGCAGACGAGGGTGATGGATCTTGTAAAGAAAACA ACAGAATATTACCATGCAGGAGCTTCGAAAGATCAAGAAGCACACGCACTTCAACTATTTTCCATCATTAAAGACTTTCTATGTATGGTTGACCAGGTCT GTATTGAAATTACTCGAAATCTGCAAAGAAGGAAAACATCATCAAGAAGTGTTGAATCCTCCCCCAAGTCACCAGCATCAAGGATCCCAGTAAGGTTCCC AAACTTGCCCCAACACTTTATGAAAGAAAAATCTATGAACTGTTCTAGCGAATCGGATTCAGATTTTTGA
AA sequence Show only first row Show all	>Potri.010G037900.1 pacid=42798214 polypeptide=Potri.010G037900.1.p locus=Potri.010G037900 ID=Potri.010G037900.1.v4.1 annot-version=v4.1 MAVIKQPWLVLHLMFFLSVIPFSSSQSISPQNIETFYPFPIPSPAPPLPSPAPPPKPSTSPNPTILSPSASGPLPSSSSNRNVVKAVAATAASTFVVATL LFFLIQRFVILPRRKSNGHGTGSRGGQAVVPLPLPPSQFSRIEGNVKGLVVDENGLDVLYWRKLEEEDKKNSFVREERRRNSKSEPIQEIPLLRGKSSTS EKKVVPETTIPTVSHQFVKAIEKQILTSQPSNSNLPLTLSPAPPPPLQSSMAIPNKQVPAPPPPPTIPAKKNQPPPPPPPPKAASSNLPPLQKGNPSKGE SGESSTGQGSTTAAAGNGQVKLKPLHWDKVNTNAGQSMVWDKIDGGSFRVDDNLMEALFGFVATNRKSPKSESNSSNSNNLISSSSAQIVILDARKSQNM AIVLKSLAISRSELLDALTNGQGLSVDTLEKLMRIAPTKEEESQILEFGGDTTRLADAESFFYHLLKAVPTAFSRINAMLFRSTYDAEILHFKESLQILE SGCKELRNRGLFIKLLEAILKAGNRMNAGTSRGNAQAFKLTSLGKLSDVKSMDGKTTLLHFVVEEVVRTEGKRCVLNRNRSLSRNSSQRSNSSVISEDSA SKGEREKEYMMLGLPAVGGLSIEFSNVKKAAQIDYDTFAATCSALATGAREVRAFMSQCAAANGEGGFVREMKGFLEAAEEELKGLTQEQTRVMDLVKKT TEYYHAGASKDQEAHALQLFSIIKDFLCMVDQVCIEITRNLQRRKTSSRSVESSPKSPASRIPVRFPNLPQHFMKEKSMNCSSESDSDF

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G70140		ATFH8	formin 8 (.1)		Potri.010G037900 [exp]	0	1
AT1G29000			Heavy metal transport/detoxifi...		Potri.014G178800 [exp]	5.74	0.9281
AT5G19410		ABCG23	ATP-binding cassette G23, ABC-...		Potri.009G070100 [exp]	8.12	0.9064
					Potri.017G046750 [exp]	16.70	0.8927
AT1G34300			lectin protein kinase family p...		Potri.016G102600 [exp]	17.54	0.9040
AT1G61590			Protein kinase superfamily pro...		Potri.001G128500 [exp]	17.54	0.9109
AT5G58860		CYP86A1	"cytochrome P450, family 86, s...		Potri.009G043700 [exp]	20.61	0.8981	CYP86A19,Pt-CYP86.4
AT3G22060			Receptor-like protein kinase-r...		Potri.004G032000 [exp]	20.61	0.8747
AT1G68850			Peroxidase superfamily protein...		Potri.010G134500 [exp]	21.65	0.8934
AT4G31540		ATEXO70G1	exocyst subunit exo70 family p...		Potri.010G250500 [exp]	22.91	0.8646
AT3G24240			Leucine-rich repeat receptor-l...		Potri.003G175700 [exp]	23.36	0.8790

Compare expression of checked genes

Potri.010G037900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.