Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G70100 196 / 4e-56 unknown protein AT1G24160 140 / 7e-36 unknown protein AT3G26050 94 / 3e-20 TPX2 (targeting protein for Xklp2) protein family (.1) AT3G27350 87 / 6e-19 unknown protein AT1G70950 86 / 1e-17 TPX2 (targeting protein for Xklp2) protein family (.1) AT5G40700 80 / 1e-16 unknown protein AT1G23060 79 / 1e-15 unknown protein AT3G01710 77 / 4e-15 TPX2 (targeting protein for Xklp2) protein family (.1), TPX2 (targeting protein for Xklp2) protein family (.2) AT2G25480 50 / 2e-06 TPX2 (targeting protein for Xklp2) protein family (.1) AT4G32330 49 / 5e-06 TPX2 (targeting protein for Xklp2) protein family (.1), TPX2 (targeting protein for Xklp2) protein family (.2), TPX2 (targeting protein for Xklp2) protein family (.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G192800 [exp] 655 / 0 AT1G70100 197 / 6e-57 unknown protein Potri.001G336300 [exp] 93 / 1e-19 AT3G27350 124 / 1e-31 unknown protein Potri.008G129300 [exp] 93 / 1e-19 AT1G70950 241 / 2e-72 TPX2 (targeting protein for Xklp2) protein family (.1) Potri.008G180900 [exp] 91 / 7e-19 AT3G26050 119 / 4e-28 TPX2 (targeting protein for Xklp2) protein family (.1) Potri.010G113000 [exp] 91 / 7e-19 AT1G70950 147 / 5e-38 TPX2 (targeting protein for Xklp2) protein family (.1) Potri.010G053200 [exp] 86 / 1e-17 AT3G26050 113 / 1e-26 TPX2 (targeting protein for Xklp2) protein family (.1) Potri.019G075700 [exp] 77 / 1e-14 AT5G40700 74 / 1e-14 unknown protein Potri.013G101300 [exp] 73 / 2e-13 AT1G24160 71 / 7e-13 unknown protein Potri.018G027500 [exp] 50 / 3e-06 AT4G32330 268 / 2e-85 TPX2 (targeting protein for Xklp2) protein family (.1), TPX2 (targeting protein for Xklp2) protein family (.2), TPX2 (targeting protein for Xklp2) protein family (.3)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010725 [exp] 321 / 3e-103 AT1G70100 213 / 2e-62 unknown protein Lus10029213 [exp] 146 / 3e-40 AT1G24160 135 / 2e-36 unknown protein Lus10037054 [exp] 88 / 5e-18 AT3G26050 132 / 9e-33 TPX2 (targeting protein for Xklp2) protein family (.1) Lus10032115 [exp] 84 / 8e-17 AT3G01710 181 / 4e-52 TPX2 (targeting protein for Xklp2) protein family (.1), TPX2 (targeting protein for Xklp2) protein family (.2) Lus10014571 [exp] 82 / 3e-16 AT3G01710 100 / 1e-22 TPX2 (targeting protein for Xklp2) protein family (.1), TPX2 (targeting protein for Xklp2) protein family (.2) Lus10003514 [exp] 66 / 2e-11 AT1G24160 76 / 2e-14 unknown protein Lus10002952 [exp] 66 / 2e-11 AT1G24160 77 / 1e-15 unknown protein Lus10002915 [exp] 52 / 1e-06 AT4G32330 228 / 2e-70 TPX2 (targeting protein for Xklp2) protein family (.1), TPX2 (targeting protein for Xklp2) protein family (.2), TPX2 (targeting protein for Xklp2) protein family (.3) Lus10016193 [exp] 49 / 1e-05 AT2G35880 181 / 7e-52 TPX2 (targeting protein for Xklp2) protein family (.1) Lus10029355 [exp] 48 / 1e-05 AT2G35880 185 / 3e-53 TPX2 (targeting protein for Xklp2) protein family (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF06886 [poplar] [flax] TPX2 Targeting protein for Xklp2 (TPX2) domain
Representative CDS sequence Show only first row Show all	>Potri.010G038100.2 pacid=42800122 polypeptide=Potri.010G038100.2.p locus=Potri.010G038100 ID=Potri.010G038100.2.v4.1 annot-version=v4.1 ATGGGTGAATCATTAGTTGCTGCCTCAAGTTATGAAGATAAGATAGGAGGGACAGTTGCCTCGGATCCTGCTCTTCAAGCGTCGGTTTCATTTGGTAGAT TTGAGAATGATTCTCTGTCTTGGGATAAATGGTCATCCTTCTCACAAAATAAGTACTTGGAGGAAGTTGAGAAGTGTGCCACTCCTGGATCTGTAGCTGA GAAAAGGGCTTACTTTGAGGCTCATTACAAAAAGATTGCTGCTAGAAAGGCTGAGCTACTAGATCAGGAGAAGCAAATCGAACATGATTTATCGAGGGCA AACAATCAAAACAGTGGAGATCTAATAGTTAAGACTAGTCAGATGGATTCAGACTTTGATGCGTCCAATGGCCAAACTTCTTCTGAAGGTATTAGGCCGG AAAGCAAATTCGATAATGAGTGGGATGGTGGCCATATAGACAAGCCTACTGAAGATGCTGCAATTGATGCACACGGTCAAGCCTCAACGAATAAGCCTTA TGAAGACACTGCAGTTGATGCACACGGTCAAGCCTCATCGAACGATCCTTATGAAGACGCTGCATTTTCTGTACATGGTCAAGCCTCATTGAATGAGCCT TATGAAGATGCTGCAATTGATGTACAAGGTCAAGTCCCATTGAATGGGAGAGTGAAGGAAGAGCAGGATAGCGAATTAGATACCCCTGTGTCAGCCAAGC TGGAAGAAGTGGCTTTAATGAAAAAGGAGGAAACTGGGTCTCAAGACATGAGAGAATTGCCAAAGAACTTAGAGAAAGAGATGGAAAGCATCCTAATGAT CAAAGAGGAAAAAGTGAAGTTAGATCATCGGAAGGAATCTCCAAAGATTTCTCCAATGAGCAAGGTTAGAGATTTAGCAATGGCGAAGAAGAAACCAGAA CCACCTATAACTAAACGGCCCCAAATCTCCTCTCTGAAGTTCTCAAAGCCTGCGTCAACTTCTAGTTCACTGTCTGCGTCACAATCTTCCATAAAGAAAG TTAACGGTTCATCTTTACCAAGGAGCAAAAATACTCCTGTTGGAGGGAACAAGAAAGTGAACCCTAAATCCTTGCACATGTCTCTGAGCATGGATTCTCC AAATTCTGAGACAGTTCCTCTTACAACTACTAGAAAATCATTTATTATGGAGAAAATGGGGGATAAGGACATTGTCAAAAGAGCATTTAAGACATTCCAA AACAATTTCAGCCAGTTGAAATCTTCTGCTGAAGAGAGATCTATTGGAGCAAAGCAGATGCCTGCAAAAGAGATAGGTGTTAAGGTTTCCACTTCTATGA CACCACGGAAAGAGAATATAGGGTCTTTCAAATCTGGCGGGGTGGATAGGAGAACTGCTAAGCTGGCCCCATCTTCTTCTGTCTTGAAAAGTGATGAGAG AGCAGAGAGAAGGAAAGAGTTTTCTAAGAAACTGGAAGAAAAATCCAAGACTGAGGCAGAGAGCAGGCGCCTTGGAACAAAATCAAAGGAGGAAAGAGAG GCAGAGATTAAAAAGCCAAGACGGAGCTTGAACTTCAAAGCCACGCCCATGCCAGGTTTTTATAGAGGACAGAAGGCATCTAAAAGCCCATTAGATAAGG AGGGTTCCAAGACGCTTCGGATATAG
AA sequence Show only first row Show all	>Potri.010G038100.2 pacid=42800122 polypeptide=Potri.010G038100.2.p locus=Potri.010G038100 ID=Potri.010G038100.2.v4.1 annot-version=v4.1 MGESLVAASSYEDKIGGTVASDPALQASVSFGRFENDSLSWDKWSSFSQNKYLEEVEKCATPGSVAEKRAYFEAHYKKIAARKAELLDQEKQIEHDLSRA NNQNSGDLIVKTSQMDSDFDASNGQTSSEGIRPESKFDNEWDGGHIDKPTEDAAIDAHGQASTNKPYEDTAVDAHGQASSNDPYEDAAFSVHGQASLNEP YEDAAIDVQGQVPLNGRVKEEQDSELDTPVSAKLEEVALMKKEETGSQDMRELPKNLEKEMESILMIKEEKVKLDHRKESPKISPMSKVRDLAMAKKKPE PPITKRPQISSLKFSKPASTSSSLSASQSSIKKVNGSSLPRSKNTPVGGNKKVNPKSLHMSLSMDSPNSETVPLTTTRKSFIMEKMGDKDIVKRAFKTFQ NNFSQLKSSAEERSIGAKQMPAKEIGVKVSTSMTPRKENIGSFKSGGVDRRTAKLAPSSSVLKSDERAERRKEFSKKLEEKSKTEAESRRLGTKSKEERE AEIKKPRRSLNFKATPMPGFYRGQKASKSPLDKEGSKTLRI

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G70100			unknown protein		Potri.010G038100 [exp]	0	1
AT4G08920		OOP2, HY4, BLU1...	OUT OF PHASE 2, ELONGATED HYPO...		Potri.002G096900 [exp]	5.19	0.8674	CRY1.2
AT3G17650		YSL5, PDE321	pigment defective 321, YELLOW ...		Potri.017G150301 [exp]	7.34	0.8831
AT5G49760			Leucine-rich repeat protein ki...		Potri.004G231700 [exp]	11.66	0.8794
AT3G11560			LETM1-like protein (.1.2.3.4)		Potri.016G074900 [exp]	13.74	0.8696
AT5G04140		GLS1, GLUS, GLU...	FERREDOXIN-DEPENDENT GLUTAMATE...		Potri.006G038400 [exp]	15.16	0.8775	Pt-GLU1.2
AT4G33950		ATOST1, P44, SR...	SNF1-RELATED PROTEIN KINASE 2....		Potri.007G096400 [exp]	31.74	0.8559
AT3G21175	GATA	GATA24, TIFY2B,...	ZIM LIKE 1, GATA TRANSCRIPTION...		Potri.007G116550 [exp]	33.27	0.8507
AT4G14570		AtAARE, AARE	acylamino acid-releasing enzym...		Potri.008G160400 [exp]	37.70	0.8601
AT5G58870		FTSH9	FTSH protease 9 (.1)		Potri.001G249100 [exp]	39.19	0.8708
AT4G11400	ARID		ARID/BRIGHT DNA-binding domain...		Potri.003G129800 [exp]	39.49	0.8408

Compare expression of checked genes

Potri.010G038100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.