Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G10460 249 / 4e-84 GLP7 germin-like protein 7 (.1) AT1G02335 163 / 3e-50 GL22 germin-like protein subfamily 2 member 2 precursor (.1) AT3G05950 161 / 1e-49 RmlC-like cupins superfamily protein (.1) AT3G04190 160 / 2e-49 RmlC-like cupins superfamily protein (.1) AT3G62020 159 / 5e-49 GLP10 germin-like protein 10 (.1.2) AT3G04180 159 / 7e-49 RmlC-like cupins superfamily protein (.1) AT1G09560 155 / 2e-47 GLP5 germin-like protein 5 (.1) AT3G04170 155 / 3e-47 RmlC-like cupins superfamily protein (.1) AT5G39160 154 / 7e-47 RmlC-like cupins superfamily protein (.1.2.3) AT5G39190 154 / 9e-47 ATGER2, GLP2A GERMIN-LIKE PROTEIN 2A, A. THALIANA GERMIN LIKE PROTEIN 2, germin-like protein 2 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G068200 [exp] 169 / 1e-52 AT1G18980 247 / 2e-83 RmlC-like cupins superfamily protein (.1) Potri.001G464500 [exp] 168 / 6e-52 AT5G39190 203 / 2e-65 GERMIN-LIKE PROTEIN 2A, A. THALIANA GERMIN LIKE PROTEIN 2, germin-like protein 2 (.1.2) Potri.011G162200 [exp] 164 / 1e-50 AT5G39190 246 / 4e-83 GERMIN-LIKE PROTEIN 2A, A. THALIANA GERMIN LIKE PROTEIN 2, germin-like protein 2 (.1.2) Potri.013G051600 [exp] 164 / 1e-50 AT3G05950 296 / 1e-102 RmlC-like cupins superfamily protein (.1) Potri.013G051700 [exp] 164 / 1e-50 AT3G05950 298 / 2e-103 RmlC-like cupins superfamily protein (.1) Potri.019G026200 [exp] 162 / 7e-50 AT3G05950 308 / 2e-107 RmlC-like cupins superfamily protein (.1) Potri.005G001300 [exp] 162 / 7e-50 AT3G62020 309 / 5e-108 germin-like protein 10 (.1.2) Potri.001G465100 [exp] 159 / 6e-49 AT5G39160 253 / 8e-86 RmlC-like cupins superfamily protein (.1.2.3) Potri.002G184900 [exp] 159 / 9e-49 AT3G62020 332 / 3e-117 germin-like protein 10 (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029214 [exp] 291 / 2e-100 AT1G10460 261 / 5e-89 germin-like protein 7 (.1) Lus10010726 [exp] 286 / 1e-98 AT1G10460 262 / 2e-89 germin-like protein 7 (.1) Lus10038014 [exp] 164 / 9e-51 AT3G62020 327 / 5e-115 germin-like protein 10 (.1.2) Lus10034254 [exp] 163 / 3e-50 AT5G39160 251 / 6e-85 RmlC-like cupins superfamily protein (.1.2.3) Lus10035278 [exp] 162 / 5e-50 AT3G05950 254 / 3e-86 RmlC-like cupins superfamily protein (.1) Lus10030048 [exp] 162 / 9e-50 AT3G05950 249 / 3e-84 RmlC-like cupins superfamily protein (.1) Lus10035186 [exp] 159 / 6e-49 AT5G39190 265 / 2e-90 GERMIN-LIKE PROTEIN 2A, A. THALIANA GERMIN LIKE PROTEIN 2, germin-like protein 2 (.1.2) Lus10035185 [exp] 159 / 1e-48 AT5G39160 265 / 2e-90 RmlC-like cupins superfamily protein (.1.2.3) Lus10029010 [exp] 158 / 2e-48 AT3G05950 250 / 2e-84 RmlC-like cupins superfamily protein (.1) Lus10032015 [exp] 158 / 2e-48 AT5G39160 262 / 3e-89 RmlC-like cupins superfamily protein (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0029 [poplar] [flax] Cupin PF07883 [poplar] [flax] Cupin_2 Cupin domain
Representative CDS sequence Show only first row Show all	>Potri.010G038200.2 pacid=42800035 polypeptide=Potri.010G038200.2.p locus=Potri.010G038200 ID=Potri.010G038200.2.v4.1 annot-version=v4.1 ATGAAAAAAACCAGCCATTCCTTGCTTCCCTCCCTCCTCACCCTGGCTCTCCTGCTGGGCTCTACGAAAGCAGACCCACACCCACTGCAAGATTATTGCA TTGCCGATACATCTAAACCTTTTTACTTGAATGGTGCTCCCTGCATCGACCCAAAACTCGCAGCTTCTTCCCATTTCACCACCGCAGCTCTGTCCAAGCC AGGCAACACGAAAGCCACCCCTTACGGCTTCAGTGTCAAGGTCACCAACGTCACTAATCTGCCAGGGCTAAACACCATGGGCCTGACAATGGCCCGGGTC GACCTTGACCCAAATGGGCTCGTCCCACTCCACTCGCATCCACGGGCCTCAGAGGTGACCATTTGCATCAAGGGTTCCCTCCTTGTGGGCTTTGTTAATA CAAGTAATTATGTGTTCACGCAACTCTTAAGGCCTGGTGAATCCTTTGTATTTCCAAGAGGTTTGATTCATTTTCTATATAACATGGAGACAATGGACTC AGCACTAGCTGTGTCTGGACTTAGCAGCCAGAGTCCAGGAACCCAAATAGCTGCTTTTGCTGCGTTCACATCAAAGCCCTCTATGCCTGACGAAGTTTTG AAGAAATCATTTCAGATTTCTAACCAAGATGTCACGAGAATTCGTAGAAATCTTGGAGGATAA
AA sequence Show only first row Show all	>Potri.010G038200.2 pacid=42800035 polypeptide=Potri.010G038200.2.p locus=Potri.010G038200 ID=Potri.010G038200.2.v4.1 annot-version=v4.1 MKKTSHSLLPSLLTLALLLGSTKADPHPLQDYCIADTSKPFYLNGAPCIDPKLAASSHFTTAALSKPGNTKATPYGFSVKVTNVTNLPGLNTMGLTMARV DLDPNGLVPLHSHPRASEVTICIKGSLLVGFVNTSNYVFTQLLRPGESFVFPRGLIHFLYNMETMDSALAVSGLSSQSPGTQIAAFAAFTSKPSMPDEVL KKSFQISNQDVTRIRRNLGG

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G10460		GLP7	germin-like protein 7 (.1)		Potri.010G038200 [exp]	0	1
AT5G61750			RmlC-like cupins superfamily p...		Potri.012G111500 [exp]	2.23	0.9027
AT3G49070			Protein of unknown function (D...		Potri.015G147400 [exp]	2.44	0.8978
AT1G05310			Pectin lyase-like superfamily ...		Potri.016G017700 [exp]	3.16	0.8286
AT5G01930		MAN6, AtMAN6	endo-beta-mannase 6, Glycosyl ...		Potri.006G109900 [exp]	5.47	0.8809
AT1G58370		ATXYN1, RXF12	ARABIDOPSIS THALIANA XYLANASE ...		Potri.002G113132 [exp]	5.65	0.8688
AT1G29050		TBL38	TRICHOME BIREFRINGENCE-LIKE 38...		Potri.011G106200 [exp]	6.92	0.8220
AT1G23460			Pectin lyase-like superfamily ...		Potri.001G463000 [exp]	6.92	0.8575
AT1G20850		XCP2	xylem cysteine peptidase 2 (.1...		Potri.005G256000 [exp]	7.41	0.8621	XCP2.1
AT5G07220		ATBAG3	BCL-2-associated athanogene 3 ...		Potri.001G358200 [exp]	8.36	0.8374
AT5G60020		LAC17, ATLAC17	laccase 17 (.1)		Potri.001G401300 [exp]	8.48	0.8316

Compare expression of checked genes

Potri.010G038200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.