Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G70090 579 / 0 GATL9, LGT8 GALACTURONOSYLTRANSFERASE-LIKE 9, glucosyl transferase family 8 (.1.2) AT1G24170 549 / 0 GATL8, LGT9 GALACTURONOSYLTRANSFERASE-LIKE 8, Nucleotide-diphospho-sugar transferases superfamily protein (.1) AT3G28340 462 / 3e-163 GolS8, GATL10 galactinol synthase 8, galacturonosyltransferase-like 10 (.1) AT3G62660 444 / 3e-156 GATL7 galacturonosyltransferase-like 7 (.1) AT4G02130 440 / 6e-155 GATL6, LGT10 galacturonosyltransferase 6 (.1.2.3) AT1G02720 432 / 2e-151 GATL5 galacturonosyltransferase 5 (.1.2) AT3G06260 402 / 7e-140 GolS9, GATL4 galactinol synthase 9, galacturonosyltransferase-like 4 (.1) AT3G50760 397 / 5e-138 GATL2 galacturonosyltransferase-like 2 (.1) AT1G19300 385 / 4e-133 ATGATL1, GATL1, PARVUS, GLZ1 PARVUS, GAOLAOZHUANGREN 1, GALACTURONOSYLTRANSFERASE-LIKE 1, Nucleotide-diphospho-sugar transferases superfamily protein (.1) AT1G13250 375 / 1e-129 GATL3 galacturonosyltransferase-like 3 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G192600 [exp] 690 / 0 AT1G70090 556 / 0.0 GALACTURONOSYLTRANSFERASE-LIKE 9, glucosyl transferase family 8 (.1.2) Potri.002G200200 [exp] 444 / 5e-156 AT3G62660 593 / 0.0 galacturonosyltransferase-like 7 (.1) Potri.014G125000 [exp] 439 / 3e-154 AT3G62660 596 / 0.0 galacturonosyltransferase-like 7 (.1) Potri.010G129400 [exp] 412 / 5e-144 AT1G13250 521 / 0.0 galacturonosyltransferase-like 3 (.1) Potri.008G116900 [exp] 412 / 8e-144 AT1G13250 509 / 0.0 galacturonosyltransferase-like 3 (.1) Potri.002G132900 [exp] 412 / 1e-143 AT1G19300 483 / 2e-172 PARVUS, GAOLAOZHUANGREN 1, GALACTURONOSYLTRANSFERASE-LIKE 1, Nucleotide-diphospho-sugar transferases superfamily protein (.1) Potri.014G040300 [exp] 411 / 3e-143 AT1G19300 489 / 1e-174 PARVUS, GAOLAOZHUANGREN 1, GALACTURONOSYLTRANSFERASE-LIKE 1, Nucleotide-diphospho-sugar transferases superfamily protein (.1) Potri.007G031700 [exp] 405 / 5e-141 AT3G50760 459 / 5e-163 galacturonosyltransferase-like 2 (.1) Potri.008G018100 [exp] 393 / 2e-136 AT3G06260 533 / 0.0 galactinol synthase 9, galacturonosyltransferase-like 4 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029215 [exp] 554 / 0 AT1G70090 543 / 0.0 GALACTURONOSYLTRANSFERASE-LIKE 9, glucosyl transferase family 8 (.1.2) Lus10010727 [exp] 554 / 0 AT1G70090 546 / 0.0 GALACTURONOSYLTRANSFERASE-LIKE 9, glucosyl transferase family 8 (.1.2) Lus10013296 [exp] 544 / 0 AT1G70090 534 / 0.0 GALACTURONOSYLTRANSFERASE-LIKE 9, glucosyl transferase family 8 (.1.2) Lus10030821 [exp] 544 / 0 AT1G70090 533 / 0.0 GALACTURONOSYLTRANSFERASE-LIKE 9, glucosyl transferase family 8 (.1.2) Lus10002440 [exp] 451 / 5e-158 AT3G62660 597 / 0.0 galacturonosyltransferase-like 7 (.1) Lus10018801 [exp] 412 / 6e-144 AT1G19300 518 / 0.0 PARVUS, GAOLAOZHUANGREN 1, GALACTURONOSYLTRANSFERASE-LIKE 1, Nucleotide-diphospho-sugar transferases superfamily protein (.1) Lus10032728 [exp] 411 / 2e-143 AT1G19300 515 / 0.0 PARVUS, GAOLAOZHUANGREN 1, GALACTURONOSYLTRANSFERASE-LIKE 1, Nucleotide-diphospho-sugar transferases superfamily protein (.1) Lus10016301 [exp] 402 / 4e-140 AT1G19300 506 / 0.0 PARVUS, GAOLAOZHUANGREN 1, GALACTURONOSYLTRANSFERASE-LIKE 1, Nucleotide-diphospho-sugar transferases superfamily protein (.1) Lus10012765 [exp] 401 / 1e-139 AT3G06260 519 / 0.0 galactinol synthase 9, galacturonosyltransferase-like 4 (.1) Lus10034012 [exp] 395 / 6e-137 AT3G06260 522 / 0.0 galactinol synthase 9, galacturonosyltransferase-like 4 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0110 [poplar] [flax] GT-A PF01501 [poplar] [flax] Glyco_transf_8 Glycosyl transferase family 8
Representative CDS sequence Show only first row Show all	>Potri.010G038300.1 pacid=42799534 polypeptide=Potri.010G038300.1.p locus=Potri.010G038300 ID=Potri.010G038300.1.v4.1 annot-version=v4.1 ATGGTTCATTTCCGGTTACACTCCGGCGTTTTACTCTACACCCTCGTTGTTCTTTTCCCTCAACTTTGCCTCGGGATTCGTTCCATACCGACGAGGGAGA CGAATACCGGTGCAGTTGAGGTACCCAACGGTTTCCGGTTCTCTGAAGCGCCGGATTACCGGAACGGGAGAGACTGTCCTGTTTCAACAACCAATGGGCG CTCGGTTTCCTCCTGCGACCCTTCTTTAGTCCACATAGCCATGACTCTTGATTCTGAGTATCTACGTGGCTCAATCGCTGCCGTCCACTCGGTTCTCAAA CACGCTTCCTGCCCAGAAAGCATCTTTTTCCACTTCGTTGCGGCAGAGTTCGACCCGGCAAGCCCACGGGTCTTAACCCAATTGGTACGATCCACTTTCC CATCGTTGAATTTCAAGGTCTATATATTCCGAGAAGACACTGTAATCAATCTAATCTCTTCTTCAATCCGGCAAGCACTGGAAAACCCATTGAATTACGC AAGAAACTATCTTGGTGATATGTTGGATCTCTGCGTGGATCGGGTCATTTATCTGGACTCTGATATTGTGGTCGTCGACGACATACACAAGTTATGGAAC ACCGCGCTTAGCGGGTCTCGAGTGATCGGGGCACCCGAGTATTGCCATGCGAATTTCACCCAGTATTTCACTTCCGTGTTCTGGTCCGACCCGGTTATGT CTGGTACTTTTTCGTCGGCGAGGAGGAAGCCGTGTTACTTCAACACTGGGGTTATGGTGATGGATTTGGTGAGGTGGAGAGAAGGGGATTATAAGAGGAG GATAGAGAAGTGGATGGAGATTCAAAAAAAGACAAGGATTTATGAGTTGGGCTCATTGCCACCATTTTTGCTCGTGTTTGCAGGGGATGTTGAAGCGATA GACCATAGATGGAACCAGCATGGACTTGGTGGGGATAATGTGAGAGGGAGTTGCAGGTCATTGCATCCTGGTCCGGTCAGCTTGCTACATTGGAGTGGGA AAGGGAAGCCTTGGGTTAGACTTGATGCTAAAAAGCCATGCAAGCTTGATCATCTTTGGGAGCCGTACGATCTGTACATCAGTAATAGCAAAGGGTATTA CTATGCTCACAATGACCACCAGTCCATGGGATTTTTTACAGGCTCTAGTTACTTGTGA
AA sequence Show only first row Show all	>Potri.010G038300.1 pacid=42799534 polypeptide=Potri.010G038300.1.p locus=Potri.010G038300 ID=Potri.010G038300.1.v4.1 annot-version=v4.1 MVHFRLHSGVLLYTLVVLFPQLCLGIRSIPTRETNTGAVEVPNGFRFSEAPDYRNGRDCPVSTTNGRSVSSCDPSLVHIAMTLDSEYLRGSIAAVHSVLK HASCPESIFFHFVAAEFDPASPRVLTQLVRSTFPSLNFKVYIFREDTVINLISSSIRQALENPLNYARNYLGDMLDLCVDRVIYLDSDIVVVDDIHKLWN TALSGSRVIGAPEYCHANFTQYFTSVFWSDPVMSGTFSSARRKPCYFNTGVMVMDLVRWREGDYKRRIEKWMEIQKKTRIYELGSLPPFLLVFAGDVEAI DHRWNQHGLGGDNVRGSCRSLHPGPVSLLHWSGKGKPWVRLDAKKPCKLDHLWEPYDLYISNSKGYYYAHNDHQSMGFFTGSSYL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G70090		GATL9, LGT8	GALACTURONOSYLTRANSFERASE-LIKE...		Potri.010G038300 [exp]	0	1
AT4G30996		NKS1	NA\(+\)- AND K\(+\)-SENSITIVE ...		Potri.018G111100 [exp]	20.83	0.7752
AT1G53920		GLIP5	GDSL-motif lipase 5 (.1)		Potri.003G071500 [exp]	22.64	0.7710
AT2G25610			ATPase, F0/V0 complex, subunit...		Potri.018G032600 [exp]	29.79	0.7874
AT5G47780		GAUT4	galacturonosyltransferase 4 (....		Potri.016G001700 [exp]	34.64	0.7588
AT4G28290			unknown protein		Potri.001G449633 [exp]	40.21	0.7393
AT1G13250		GATL3	galacturonosyltransferase-like...		Potri.010G129400 [exp]	46.08	0.7663
AT3G07210			unknown protein		Potri.002G245700 [exp]	59.79	0.7539
AT5G65810		CGR3	cotton Golgi-related 3, unknow...		Potri.002G114000 [exp]	68.12	0.7593
AT2G27810		ATNAT12	ARABIDOPSIS NUCLEOBASE-ASCORBA...		Potri.009G148600 [exp]	69.54	0.7234
AT1G49140			Complex I subunit NDUFS6 (.1)		Potri.015G054700 [exp]	78.55	0.7285

Compare expression of checked genes

Potri.010G038300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.