Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	ALPHA.8
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G59900 652 / 0 AT-E1 ALPHA, AT-E1ALPHA pyruvate dehydrogenase complex E1 alpha subunit (.1) AT1G24180 640 / 0 IAR4 IAA-CONJUGATE-RESISTANT 4, Thiamin diphosphate-binding fold (THDP-binding) superfamily protein (.1) AT1G01090 228 / 2e-70 PDH-E1 ALPHA, PDH-E1ALPHA pyruvate dehydrogenase E1 alpha (.1) AT5G09300 152 / 4e-42 Thiamin diphosphate-binding fold (THDP-binding) superfamily protein (.1), Thiamin diphosphate-binding fold (THDP-binding) superfamily protein (.2) AT1G21400 144 / 1e-38 Thiamin diphosphate-binding fold (THDP-binding) superfamily protein (.1) AT5G34780 102 / 6e-24 Thiamin diphosphate-binding fold (THDP-binding) superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G192500 [exp] 725 / 0 AT1G59900 673 / 0.0 pyruvate dehydrogenase complex E1 alpha subunit (.1) Potri.002G179500 [exp] 229 / 4e-71 AT1G01090 672 / 0.0 pyruvate dehydrogenase E1 alpha (.1) Potri.005G064000 [exp] 156 / 5e-43 AT5G09300 654 / 0.0 Thiamin diphosphate-binding fold (THDP-binding) superfamily protein (.1), Thiamin diphosphate-binding fold (THDP-binding) superfamily protein (.2) Potri.005G185400 [exp] 136 / 2e-35 AT5G09300 619 / 0.0 Thiamin diphosphate-binding fold (THDP-binding) superfamily protein (.1), Thiamin diphosphate-binding fold (THDP-binding) superfamily protein (.2) Potri.002G074900 [exp] 128 / 1e-32 AT1G21400 586 / 0.0 Thiamin diphosphate-binding fold (THDP-binding) superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029216 [exp] 667 / 0 AT1G59900 695 / 0.0 pyruvate dehydrogenase complex E1 alpha subunit (.1) Lus10013295 [exp] 666 / 0 AT1G59900 687 / 0.0 pyruvate dehydrogenase complex E1 alpha subunit (.1) Lus10010728 [exp] 655 / 0 AT1G59900 687 / 0.0 pyruvate dehydrogenase complex E1 alpha subunit (.1) Lus10030820 [exp] 523 / 0 AT1G59900 546 / 0.0 pyruvate dehydrogenase complex E1 alpha subunit (.1) Lus10002678 [exp] 230 / 2e-71 AT1G01090 688 / 0.0 pyruvate dehydrogenase E1 alpha (.1) Lus10028648 [exp] 154 / 2e-41 AT1G21400 645 / 0.0 Thiamin diphosphate-binding fold (THDP-binding) superfamily protein (.1) Lus10018945 [exp] 153 / 2e-40 AT1G21400 644 / 0.0 Thiamin diphosphate-binding fold (THDP-binding) superfamily protein (.1) Lus10030819 [exp] 133 / 2e-38 AT1G59900 124 / 1e-35 pyruvate dehydrogenase complex E1 alpha subunit (.1) Lus10020895 [exp] 133 / 2e-34 AT5G09300 629 / 0.0 Thiamin diphosphate-binding fold (THDP-binding) superfamily protein (.1), Thiamin diphosphate-binding fold (THDP-binding) superfamily protein (.2) Lus10033480 [exp] 125 / 3e-32 AT5G09300 558 / 0.0 Thiamin diphosphate-binding fold (THDP-binding) superfamily protein (.1), Thiamin diphosphate-binding fold (THDP-binding) superfamily protein (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0254 [poplar] [flax] THDP-binding PF00676 [poplar] [flax] E1_dh Dehydrogenase E1 component
Representative CDS sequence Show only first row Show all	>Potri.010G038400.2 pacid=42796896 polypeptide=Potri.010G038400.2.p locus=Potri.010G038400 ID=Potri.010G038400.2.v4.1 annot-version=v4.1 ATGGCCTTATCACACCTAAAATCATCTTCCTCCGGATCCAATTTCCTCAAACCTCTCGCCACCGCCTTTTCTCTCCGCCGTCCGATCTCTACCTCAACTG ATCCCCTCACAATCGAGACCTCCATTCCCTTCACTACTCACAGATGCGATCCACCATCGCGCACCGTCGATACCAGTCCCCAAGAACTCCTCTCCTTCTT CCGCGACATGGCCACCATGCGCCGTATGGAGATCGCCGCCGACTCTCTATACAAGGCCAAGCTCATCCGCGGATTCTGCCACCTCTACGACGGTCAAGAA GCCGTGGCCGTTGGTATGGAGGCTGCAATTACCAAAAAAGACAGCATCATAACTGCCTACCGTGACCACTGCACGTTTCTGGGGAGAGGTGGGACCCTCC TGGAGATATTTTCGGAGCTGATGGGACGACAGGGCGGTTGTTCGAGTGGGAAAGGTGGGTCCATGCATTTCTATAAGAAAAATAGTGGATTTTATGGAGG GCATGGTATTGTAGGAGCTCAAGTGCCGTTAGGTTGTGGATTGGCATTTGCTCATAAGTATAACAAGGACGATGCCGTCGCCTTTGCTTTGTATGGAGAT GGTGCTGCTAATCAAGGACAGTTGTTCGAGGCTCTTAATATCTCAGCTCTTTGGGATCTTCCAATCATTTTGGTCTGCGAGAATAATCATTATGGAATGG GGACAGCCGAGTGGAGAGCCGCCAAGAGTCCAGCATACTATAAGCGTGGAGATTATGTTCCTGGTTTGAAGGTAGATGGCATGGATGCTTTTGCTGTGAA ACAAGCATGCAAATTTGCAAAGGAGCACGCCTTAAAGAGTGGACCCATTATACTTGAAATGGATACCTATAGGTATCATGGTCACTCTATGTCTGATCCT GGGAGCACCTACCGTACCCGTGACGAGATCAGTGGCGTGAGACAGGAACGTGATCCAATTGAAAGAATAAGAAAGTTGATAGTGACCCATGATCTAGCTA CTGAGAAAGAGCTGAAGGATATTGAAAAAGAAGTGAGAAAACAAGTAGATGAAGCCATTGCTCAAGCCAAGGAAAGTCCTATGCCAGAACCTTCAGAACT TTTCACAAACGTATACGCGAAGGGTATGGGAGTTGAGGCATATGGAGCTGATAGGAAAGAAGTTAGAGCTGTGCTTCCCTGA
AA sequence Show only first row Show all	>Potri.010G038400.2 pacid=42796896 polypeptide=Potri.010G038400.2.p locus=Potri.010G038400 ID=Potri.010G038400.2.v4.1 annot-version=v4.1 MALSHLKSSSSGSNFLKPLATAFSLRRPISTSTDPLTIETSIPFTTHRCDPPSRTVDTSPQELLSFFRDMATMRRMEIAADSLYKAKLIRGFCHLYDGQE AVAVGMEAAITKKDSIITAYRDHCTFLGRGGTLLEIFSELMGRQGGCSSGKGGSMHFYKKNSGFYGGHGIVGAQVPLGCGLAFAHKYNKDDAVAFALYGD GAANQGQLFEALNISALWDLPIILVCENNHYGMGTAEWRAAKSPAYYKRGDYVPGLKVDGMDAFAVKQACKFAKEHALKSGPIILEMDTYRYHGHSMSDP GSTYRTRDEISGVRQERDPIERIRKLIVTHDLATEKELKDIEKEVRKQVDEAIAQAKESPMPEPSELFTNVYAKGMGVEAYGADRKEVRAVLP

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G59900		AT-E1 ALPHA, AT...	pyruvate dehydrogenase complex...		Potri.010G038400 [exp]	0	1	ALPHA.8
AT5G18480		PGSIP6	plant glycogenin-like starch i...		Potri.013G049100 [exp]	2.23	0.6625
AT1G34760		RHS5, GF14OMICR...	ROOT HAIR SPECIFIC 5, general ...		Potri.005G164500 [exp]	11.35	0.6426
AT1G45000			AAA-type ATPase family protein...		Potri.002G031400 [exp]	18.11	0.6458	RPT4.2
AT3G08590		iPGAM2	2,3-biphosphoglycerate-indepen...		Potri.006G113300 [exp]	21.49	0.5703
AT4G31180			Class II aminoacyl-tRNA and bi...		Potri.006G085400 [exp]	22.44	0.6182
AT3G02090		MPPBETA	Insulinase (Peptidase family M...		Potri.004G118900 [exp]	24.00	0.6130
AT4G39220		ATRER1A	Rer1 family protein (.1)		Potri.007G047800 [exp]	27.20	0.6082
AT2G42520			P-loop containing nucleoside t...		Potri.003G217800 [exp]	30.85	0.5812
AT5G53750			CBS domain-containing protein ...		Potri.011G050500 [exp]	30.85	0.5545
AT1G04990	C3HZnF		Zinc finger C-x8-C-x5-C-x3-H t...		Potri.002G223700 [exp]	32.03	0.5759	ZFN2.2

Compare expression of checked genes

Potri.010G038400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.