Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G70070 1502 / 0 ISE2, EMB25, PDE317 PIGMENT DEFECTIVE 317, INCREASED SIZE EXCLUSION LIMIT 2, EMBRYO DEFECTIVE 25, DEAD/DEAH box helicase, putative (.1) AT1G59760 257 / 5e-71 AtMTR4 homolog of yeast MTR4, RNA helicase, ATP-dependent, SK12/DOB1 protein (.1) AT3G46960 256 / 8e-70 RNA helicase, ATP-dependent, SK12/DOB1 protein (.1) AT2G06990 238 / 1e-64 HEN2 hua enhancer 2, RNA helicase, ATP-dependent, SK12/DOB1 protein (.1) AT4G32700 70 / 9e-12 TEB TEBICHI, helicases;ATP-dependent helicases;nucleic acid binding;ATP binding;DNA-directed DNA polymerases;DNA binding (.2) AT3G27730 64 / 7e-10 MER3, RCK ROCK-N-ROLLERS, ATP binding;ATP-dependent helicases;DNA helicases (.1) AT5G61140 62 / 4e-09 U5 small nuclear ribonucleoprotein helicase (.1.2) AT1G20960 61 / 9e-09 EMB1507 embryo defective 1507, U5 small nuclear ribonucleoprotein helicase, putative (.1.2) AT2G42270 59 / 3e-08 U5 small nuclear ribonucleoprotein helicase (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G146001 [exp] 244 / 3e-69 AT2G06990 972 / 0.0 hua enhancer 2, RNA helicase, ATP-dependent, SK12/DOB1 protein (.1) Potri.004G228700 [exp] 244 / 2e-66 AT1G59760 1581 / 0.0 homolog of yeast MTR4, RNA helicase, ATP-dependent, SK12/DOB1 protein (.1) Potri.006G078000 [exp] 243 / 3e-66 AT2G06990 1634 / 0.0 hua enhancer 2, RNA helicase, ATP-dependent, SK12/DOB1 protein (.1) Potri.009G041200 [exp] 159 / 3e-39 AT3G46960 1988 / 0.0 RNA helicase, ATP-dependent, SK12/DOB1 protein (.1) Potri.018G036600 [exp] 74 / 6e-13 AT4G32700 2501 / 0.0 TEBICHI, helicases;ATP-dependent helicases;nucleic acid binding;ATP binding;DNA-directed DNA polymerases;DNA binding (.2) Potri.015G056501 [exp] 64 / 1e-09 AT5G61140 3496 / 0.0 U5 small nuclear ribonucleoprotein helicase (.1.2) Potri.001G348200 [exp] 62 / 2e-09 AT3G27730 1542 / 0.0 ROCK-N-ROLLERS, ATP binding;ATP-dependent helicases;DNA helicases (.1) Potri.015G095500 [exp] 59 / 3e-08 AT1G20960 3326 / 0.0 embryo defective 1507, U5 small nuclear ribonucleoprotein helicase, putative (.1.2) Potri.012G097300 [exp] 56 / 3e-07 AT1G20960 3440 / 0.0 embryo defective 1507, U5 small nuclear ribonucleoprotein helicase, putative (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030818 [exp] 1471 / 0 AT1G70070 1389 / 0.0 PIGMENT DEFECTIVE 317, INCREASED SIZE EXCLUSION LIMIT 2, EMBRYO DEFECTIVE 25, DEAD/DEAH box helicase, putative (.1) Lus10013294 [exp] 1422 / 0 AT1G70070 1372 / 0.0 PIGMENT DEFECTIVE 317, INCREASED SIZE EXCLUSION LIMIT 2, EMBRYO DEFECTIVE 25, DEAD/DEAH box helicase, putative (.1) Lus10017528 [exp] 255 / 4e-69 AT3G46960 1971 / 0.0 RNA helicase, ATP-dependent, SK12/DOB1 protein (.1) Lus10027599 [exp] 246 / 3e-67 AT2G06990 1633 / 0.0 hua enhancer 2, RNA helicase, ATP-dependent, SK12/DOB1 protein (.1) Lus10007442 [exp] 206 / 4e-54 AT1G59760 1523 / 0.0 homolog of yeast MTR4, RNA helicase, ATP-dependent, SK12/DOB1 protein (.1) Lus10022944 [exp] 195 / 1e-53 AT2G06990 713 / 0.0 hua enhancer 2, RNA helicase, ATP-dependent, SK12/DOB1 protein (.1) Lus10024454 [exp] 160 / 1e-39 AT1G59760 1557 / 0.0 homolog of yeast MTR4, RNA helicase, ATP-dependent, SK12/DOB1 protein (.1) Lus10022115 [exp] 93 / 1e-18 AT4G32700 2356 / 0.0 TEBICHI, helicases;ATP-dependent helicases;nucleic acid binding;ATP binding;DNA-directed DNA polymerases;DNA binding (.2) Lus10016048 [exp] 61 / 6e-09 AT1G20960 3558 / 0.0 embryo defective 1507, U5 small nuclear ribonucleoprotein helicase, putative (.1.2) Lus10040524 [exp] 61 / 7e-09 AT5G61140 3299 / 0.0 U5 small nuclear ribonucleoprotein helicase (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [poplar] [flax] P-loop_NTPase PF00271 [poplar] [flax] Helicase_C Helicase conserved C-terminal domain CL0023 [poplar] [flax] PF08148 [poplar] [flax] DSHCT DSHCT (NUC185) domain
Representative CDS sequence Show only first row Show all	>Potri.010G038500.1 pacid=42798650 polypeptide=Potri.010G038500.1.p locus=Potri.010G038500 ID=Potri.010G038500.1.v4.1 annot-version=v4.1 ATGAACAACACTCTCTCTATCCTTTCCTCTCCATACATTTCCAAATTCAATGCTTCCCTATTCCCTCCTCATCTTCCTCAAACCCTAGGATTCTACTGCC TTCAAAAACCCAAACCCAAACCCAAACCCAAACCCAAACCGAGATCATTAAATTCATTTCGACTCCTCTCCTTCTCCAACTCCCCAAACTCTTTCATTCC GGCCGAGTCGCAACTCTCCGATGCAGACAACGACGAAGAAGAAGAGTACGAAGATGACGAAGACGACGACGAAGAGGAAGACGAAGCTGCTGATGAATAC GACGATATTTCGGAGGCAATCGAAGAAGAAACAGAAACCGAAATATCGGTCGATGCGAGTAGTAGTGAAGTATCAAATTGGCGCAAGGAATCCAAGTGGC AGAGAGTTGAAAAGCTCTGTAACGAAGTCAAAGAGTTTGGAAATGAAATTATTGACGCTAATGAACTTGCTTCCATTTACGATTTCCGCATCGACAAATT TCAGCGGTTGGCGATAGAGGCGTTTTTGAAGGGATCATCGGTAGTGGTATCGGCACCAACAAGCAGTGGAAAGACATTGATAGCTGAAGCTGCAGCAGTT GCTACTGTTGCTAGAGGAAGGAGGATTTTCTACACCACTCCTCTTAAGGCTTTGTCCAACCAGAAATTTCGTGATTTTCGGGAGACGTTTGGGGATGAGA ATGTTGGTCTTCTCACAGGAGATTCTGCCATCAATAAAGATGCCCAAGTTTTGATTATGACAACAGAGATTTTGCGAAACATGTTGTATCAAAGCATTGG GATGGTTTCTTCTGGGAGTGGACTTTTCCATGTTGATGTGATTGTTTTGGATGAAGTTCATTTTCTAAGTGATATATCTCGTGGTACTGTATGGGAGGAG ATAATTATTTATTGCCCGAAAGAAGTTCAACTGATATGTTTATCAGCAACAGTCAAGAATCCAGATGAGCTGTCTGGATGGATTCGTGAGGTTCATGGTG AAACTGAACTGGTGACATCATCAAGGCGTCCAGTTCCATTGACTTGGCACTTCTCTACCAGGCATTCTTTGTATCCCCTTCTTGATGAGAAAAGAAAGCA CATGAATAGGAAGCTGTCGCTCAATTATCTACAACTTTCTGCTTCAAGAGTTAAATCTTACAAGGATGATGGGTCGAGAAGAAGGAATTCAAGAAAACGT GGAAGCAACATGGGCTTTGATAGTATTGGTAACATGTCTGAAGAACCCCTTTCGAAGAATGATATAAGCAGAATACGCCGTTCACAGGTGCCTCAAGTTG TTGATACACTAGCACAGCTTAAGGCAAGGGATATGCTGCCTGCAATTTGGTTTATTTTTAACCGAAGAGGATGTGATGCGGCTGTGCAGTACCTTGAAGG TTGCAGGCTCTTAGATGAATGTGAGGCAAGTGAGGTTGAACTGGCTTTGAAGAGGTTCAGTGTTCAGAATCCCGATGCTGTCAGGGAGACTGCTGTCAAA GGACTTCTAAGAGGGGTTGCTGCGCATCATGCAGGATGTCTCCCTCTATGGAAATCTTTTATTGAGGAACTGTTCCAGAGAGGACTTATTAAAGTTGTCT TTGCTACAGAAACACTAGCTGCTGGAATCAACATGCCTGCTAGGACAGCTGTTATCTCGTCTCTCAGCAGGAGGAGTAGTAGTGGACGTATCCCATTAAG CCCAAACGAGCTTCTTCAAATGGCCGGGCGAGCTGGTCGTAGAGGCATTGATGAAAGGGGCCATGTTGTGCTGGTTCAGGCTTCCAATGAAGGTGCAGAA GAGTGCTGCAAGCTTCTATTTGCTGGACTAGAACCTCTTGTATCACAGTTTACTGCTTCCTATGGGATGGTGCTGAATCTTCTTGCTGGTGCAAAAATTA CTCGTAGATCAAACGAATCAAATGAAATGAAGGTTCTCCAGGCAGGGAGAACTTTGAAAGAAGCCAGGAAACTAGTTGAGAAAAGTTTTGGAACATATAT TGGCAGCAATGTGATGCTTGCTTCAAAAGAGGAGCTAGCTAAAATACAGAAAGAGATTGAAATGCTGACCTCAGAAACCAGTGATGATGCTATAGATAGA AAGAGCAGGAAAATCCTATCTGATGGGGCATACAAGGAGATTGCAATTTTACAAGAACAATTGAGGGAAGAGAAACGCCTGCGGACTGAATTACGCAGAA AGATGGAAACAAAGAGATTAAATGCCCTGAAAATTTTATTGAAAGAGTTAGGAAATGATCGTTTACCCTTTTTGTGCTTGAAATACAAAGATTCTGAAGG AGTGGAACATTCAGTGCCTGCTGTTTATTTGGGGAATGCTGATTCATTTGATGGTTCAAAATTTAAAAACATGGTTTCTGACATTGATTCATTAGCACAG ACTGTTGCACCCATTGAGTCTAATGTAAGTGAAGTTGAAACTCATAAAGATGTTGAGCCATCTTATCATGTAGCTCTTGGTTCAGATAACTCTTGGTATC TGTTTACAGAAAAATGGATCAAAACTGTTTATAGGACAGGCCTTCCTAATGTTGCCTTGTCTCTAGGGGATGATTTGCCACATGAAGTTATGTGGATGCT TCTTGATAGGGAGGAGAAGCAGTGGGAAAAGCTTGCTGAATCTGAACTTGGTGGTTTATGGTACATGGAAGGATCTCTCGAGACATGGTCGTGGAGCTTA AATGTGCCTGTTTTAAATAGTCTCTCTGAGATTGATGAGGTGTTACACATGTCACAAGCTTACCATGATGCAGTAGAAAGTTACAAGGATCAAAGAAACA AAGTTGCACGTTTGAAAAAAACGATAGCACGTACTGAAGGCTTTAAAGAATATAAGAGGATCCTAGACTGGAAGAATTTTACAGAGGATAAGATTAAACG CCTCAAGATGAGATCAAACCGTTTGAGCGAACGGCTGCAGGAAATCGAACCATCTGGTTGGAAAGAATTCTTAAAGATCAGCAATGTTGTACATGAAAGC AGGGCCTTGGATATCAACACACAAGTAATATTTCCTCTTGGTGAAACCGCAGCTGCGATTCGAGGAGAAAATGAACTGTGGCTTGCAATGGTTCTTAGAA GTAGAATCCTTTTGGATTTGAAACCTGGACAACTCGCAGCTGTCTGTGCAAGTGTAGTTTCTGAAGGGATCAAAGTTCGTGCCTGGGAAAATAACAACTA CATCTACGAACCTTCTTCCGCAGTAATCAATGTTATCAACATCTTAAATGAGCAGAGAAGTAACCTTTCGAAGCTTCAAGAAAAACATGGGGTAGAGATA ACCTGTTGTTTGGATAGCCAATTTTCAGGTATGGTTGAAGCCTGGGCTGCAGGGCTCACATGGAAGGAGATGATGATGGATTGTGCAATGGATGATGGGG ATTTAGCTCGCCTTCTGCGACGAACAATTGATATATTGGCTCAGATTCCTAAATTACCCGATATTGACCCAGTTTTGCAAAGCAATGCAAAGACAGCATC CAGCATCATGGACCGTCCACCAATAAGTGAACTGACTGGATAG
AA sequence Show only first row Show all	>Potri.010G038500.1 pacid=42798650 polypeptide=Potri.010G038500.1.p locus=Potri.010G038500 ID=Potri.010G038500.1.v4.1 annot-version=v4.1 MNNTLSILSSPYISKFNASLFPPHLPQTLGFYCLQKPKPKPKPKPKPRSLNSFRLLSFSNSPNSFIPAESQLSDADNDEEEEYEDDEDDDEEEDEAADEY DDISEAIEEETETEISVDASSSEVSNWRKESKWQRVEKLCNEVKEFGNEIIDANELASIYDFRIDKFQRLAIEAFLKGSSVVVSAPTSSGKTLIAEAAAV ATVARGRRIFYTTPLKALSNQKFRDFRETFGDENVGLLTGDSAINKDAQVLIMTTEILRNMLYQSIGMVSSGSGLFHVDVIVLDEVHFLSDISRGTVWEE IIIYCPKEVQLICLSATVKNPDELSGWIREVHGETELVTSSRRPVPLTWHFSTRHSLYPLLDEKRKHMNRKLSLNYLQLSASRVKSYKDDGSRRRNSRKR GSNMGFDSIGNMSEEPLSKNDISRIRRSQVPQVVDTLAQLKARDMLPAIWFIFNRRGCDAAVQYLEGCRLLDECEASEVELALKRFSVQNPDAVRETAVK GLLRGVAAHHAGCLPLWKSFIEELFQRGLIKVVFATETLAAGINMPARTAVISSLSRRSSSGRIPLSPNELLQMAGRAGRRGIDERGHVVLVQASNEGAE ECCKLLFAGLEPLVSQFTASYGMVLNLLAGAKITRRSNESNEMKVLQAGRTLKEARKLVEKSFGTYIGSNVMLASKEELAKIQKEIEMLTSETSDDAIDR KSRKILSDGAYKEIAILQEQLREEKRLRTELRRKMETKRLNALKILLKELGNDRLPFLCLKYKDSEGVEHSVPAVYLGNADSFDGSKFKNMVSDIDSLAQ TVAPIESNVSEVETHKDVEPSYHVALGSDNSWYLFTEKWIKTVYRTGLPNVALSLGDDLPHEVMWMLLDREEKQWEKLAESELGGLWYMEGSLETWSWSL NVPVLNSLSEIDEVLHMSQAYHDAVESYKDQRNKVARLKKTIARTEGFKEYKRILDWKNFTEDKIKRLKMRSNRLSERLQEIEPSGWKEFLKISNVVHES RALDINTQVIFPLGETAAAIRGENELWLAMVLRSRILLDLKPGQLAAVCASVVSEGIKVRAWENNNYIYEPSSAVINVINILNEQRSNLSKLQEKHGVEI TCCLDSQFSGMVEAWAAGLTWKEMMMDCAMDDGDLARLLRRTIDILAQIPKLPDIDPVLQSNAKTASSIMDRPPISELTG

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G70070		ISE2, EMB25, PD...	PIGMENT DEFECTIVE 317, INCREAS...		Potri.010G038500 [exp]	0	1
AT5G18570		EMB3138, ATOBGL...	EMBRYO DEFECTIVE 3138, EMBRYO ...		Potri.010G022400 [exp]	1.00	0.9814
AT1G06730			pfkB-like carbohydrate kinase ...		Potri.005G220400 [exp]	2.00	0.9773
AT3G57180		BPG2	BRASSINAZOLE\(BRZ\) INSENSITIV...		Potri.006G044700 [exp]	2.44	0.9793
AT2G40690		SFD1, GLY1	SUPPRESSOR OF FATTY ACID DESAT...		Potri.013G090900 [exp]	2.82	0.9796
AT4G02510		TOC86, TOC160, ...	TRANSLOCON AT THE OUTER ENVELO...		Potri.008G224900 [exp]	5.47	0.9767
AT1G74850		PDE343, PTAC2	PIGMENT DEFECTIVE 343, plastid...		Potri.015G069100 [exp]	7.07	0.9741
AT5G17790		VAR3	VARIEGATED 3, zinc finger (Ran...		Potri.013G067200 [exp]	8.36	0.9704
AT2G31170		FIONA, SYCOARAT...	cysteinyl t-RNA synthetase, FI...		Potri.018G024300 [exp]	9.32	0.9613
AT1G02150			Tetratricopeptide repeat (TPR)...		Potri.014G050300 [exp]	10.39	0.9742
AT5G46580			pentatricopeptide (PPR) repeat...		Potri.003G089600 [exp]	10.58	0.9765

Compare expression of checked genes

Potri.010G038500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.