Plant FIBer expression Database

Potri.010G038600 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G23790 285 / 2e-91 Plant protein of unknown function (DUF936) (.1)
AT1G70340 241 / 1e-74 Plant protein of unknown function (DUF936) (.1)
AT1G08760 62 / 4e-10 Plant protein of unknown function (DUF936) (.1)
AT2G31920 46 / 3e-05 Plant protein of unknown function (DUF936) (.1)
AT3G19610 42 / 0.0005 Plant protein of unknown function (DUF936) (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.008G192300
[exp]
573 / 0 AT1G23790 572 / 0.0 Plant protein of unknown function (DUF936) (.1)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10029158
[exp]
340 / 2e-112 AT1G70340 477 / 2e-164 Plant protein of unknown function (DUF936) (.1)
Lus10013006
[exp]
331 / 2e-110 AT1G23790 300 / 6e-97 Plant protein of unknown function (DUF936) (.1)
Lus10030619
[exp]
212 / 3e-63 AT1G23790 393 / 5e-132 Plant protein of unknown function (DUF936) (.1)
Lus10030870
[exp]
198 / 4e-58 AT1G23790 391 / 6e-131 Plant protein of unknown function (DUF936) (.1)
Lus10041407
[exp]
120 / 2e-31 AT1G23790 135 / 7e-37 Plant protein of unknown function (DUF936) (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
PF06075 DUF936 Plant protein of unknown function (DUF936)
Representative CDS sequence
>Potri.010G038600.2 pacid=42796830 polypeptide=Potri.010G038600.2.p locus=Potri.010G038600 ID=Potri.010G038600.2.v4.1 annot-version=v4.1
ATGGAGGCACTAATGGGGTGGTTAGGTGTTCTTTTGCTGGTGGTGGATTGCTGGCTAAGATGGTGGACAACAAGGGAGAGAGCCCTGCAATGCTTAGGAA
AAGTTGTGCTGCACCCTTCTGCTAATTTCAAGTTTCCAAGAAGCAAGAGTGTCTGTGAACGAGAAGCTAGAATTCCAATTAGCCCCTGCAAATCATCTGA
TAATAAAAGCTCAACTCCCCCACCGAGTTTAAGAAATGCAAGGGCGGTAGCTTCTCTCGGAATGGGCGGAGAAGCACAAAACTCTTGCAATTTAAAGGCC
ATCTCAGAAATACAGTGTCAGTATGGGAATGCAGCCTCTGATACCAGTACCGAGCTGGCCATGAATTTACCAGGAAAGTTGAACCTATTAGGCAAGGAAG
CTGTGCAGCAACGAGAAACGGCTCAGAAGATAGCCCTCCAGGCGCTAAGAGATGCCTCAGCCACTGAAACTTTAGTTCGGCCTCTCAAGATGATCTTGAA
TCTGAGCAGAACAGCGAGACCAGATGCTCCAGCAGCCTGTTTTGACCAGTTTCTGGAGTTCCATCACCAGATTGTGAGAGCAGTTACTGATATAGTGTCC
ATTCAAGCAGCTACTTCAGCTGCTGAAGTTGGTCAGAGCACAAATATCGAACAGCGTGGAGAAAATTCCTCAATCTTACATGAAATTGTACACAATTCTA
TGGACCAATGTGGGAATCCTGCATTAAACTCATCAAAAAGAAGAACAGCATTGTACAAATCAATTGGTAGCTTCAATGAAAGAAGTGATCAGACGATGAA
TTTTGAGAAACTCCAGAGATCAAATGCTAATCAAAAGGCCTTTCCAGAAAGAAAAGGGCCATCAACTCCACAGGGAAAACTGCCACCTAAAGCTATGATT
GAGAATGATGAAAACAAGAGACCAACCTCCTCTTGCAGCTTAAGCAATACAATTAGGTTGGGTAAGCAGATTGAAAATGAAGCTGGAAATTGGTTCATGG
ACTTCCTAGAGAAAGCTTTGGAAACTGGAATGAAGAAATCTAAAGGAACAACAGCAGATGGGGATGCTAAGAAAGTTCCTCAATCTCTAATATTGAAGGT
TATAAACTGGGTGGAGGTAGAACAGTCTGACTGCCATAAGCGGCCAGTTCATCCAAAAGCAGCACAGATTGCTCGGAAGTTGAGGATCAAGGTGAAGAAT
CCTTAG
AA sequence
>Potri.010G038600.2 pacid=42796830 polypeptide=Potri.010G038600.2.p locus=Potri.010G038600 ID=Potri.010G038600.2.v4.1 annot-version=v4.1
MEALMGWLGVLLLVVDCWLRWWTTRERALQCLGKVVLHPSANFKFPRSKSVCEREARIPISPCKSSDNKSSTPPPSLRNARAVASLGMGGEAQNSCNLKA
ISEIQCQYGNAASDTSTELAMNLPGKLNLLGKEAVQQRETAQKIALQALRDASATETLVRPLKMILNLSRTARPDAPAACFDQFLEFHHQIVRAVTDIVS
IQAATSAAEVGQSTNIEQRGENSSILHEIVHNSMDQCGNPALNSSKRRTALYKSIGSFNERSDQTMNFEKLQRSNANQKAFPERKGPSTPQGKLPPKAMI
ENDENKRPTSSCSLSNTIRLGKQIENEAGNWFMDFLEKALETGMKKSKGTTADGDAKKVPQSLILKVINWVEVEQSDCHKRPVHPKAAQIARKLRIKVKN
P

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT1G23790 Plant protein of unknown funct... Potri.010G038600
[exp]
0 1
AT3G05330 ATN ,ATTAN A. THALIANA TAN1, TANGLED, cyc... Potri.005G033200
[exp]
1.00 0.9824
AT2G16270 unknown protein Potri.009G084400
[exp]
3.16 0.9798
AT1G23790 Plant protein of unknown funct... Potri.008G192300
[exp]
4.00 0.9563
AT4G20900 TDM1, MS5 MALE-STERILE 5, Tetratricopept... Potri.011G163500
[exp]
4.24 0.9662
AT3G42725 Putative membrane lipoprotein ... Potri.018G065700
[exp]
5.47 0.9675
AT1G72670 IQD8 IQ-domain 8 (.1) Potri.003G042700
[exp]
6.00 0.9698
AT4G32830 ATAUR1 ataurora1 (.1) Potri.006G235000
[exp]
7.93 0.9711
AT4G02800 unknown protein Potri.005G209400
[exp]
8.06 0.9686
AT2G16270 unknown protein Potri.001G289100
[exp]
10.58 0.9665
AT4G32830 ATAUR1 ataurora1 (.1) Potri.018G057700
[exp]
11.22 0.9455

Potri.010G038600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.