Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G70060 1395 / 0 SNL4 SIN3-like 4 (.1) AT1G24190 1379 / 0 SNL3, AtSin3 ARABIDOPSIS THALIANA SIN3 HOMOLOG, SIN3-like 3 (.1.2) AT3G01320 1173 / 0 SNL1 SIN3-like 1 (.1.2) AT5G15020 849 / 0 SNL2 SIN3-like 2 (.1.2) AT1G59890 459 / 1e-139 SNL5 SIN3-like 5 (.1.2.3.4) AT1G10450 444 / 1e-134 SNL6 SIN3-like 6 (.1) AT1G24200 217 / 2e-64 Paired amphipathic helix (PAH2) superfamily protein (.1) AT1G70030 179 / 1e-51 Paired amphipathic helix (PAH2) superfamily protein (.1) AT1G24230 134 / 5e-35 Paired amphipathic helix (PAH2) superfamily protein (.1) AT5G35610 125 / 7e-33 Paired amphipathic helix (PAH2) superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G192200 [exp] 2383 / 0 AT1G24190 1330 / 0.0 ARABIDOPSIS THALIANA SIN3 HOMOLOG, SIN3-like 3 (.1.2) Potri.001G350200 [exp] 917 / 0 AT5G15020 1391 / 0.0 SIN3-like 2 (.1.2) Potri.001G316300 [exp] 75 / 7e-15 AT3G01320 86 / 1e-19 SIN3-like 1 (.1.2) Potri.005G008200 [exp] 58 / 4e-10 AT5G15020 66 / 4e-14 SIN3-like 2 (.1.2) Potri.017G056201 [exp] 0 / 1 AT1G24190 0 / 1 ARABIDOPSIS THALIANA SIN3 HOMOLOG, SIN3-like 3 (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013293 [exp] 1880 / 0 AT1G70060 1454 / 0.0 SIN3-like 4 (.1) Lus10030817 [exp] 1814 / 0 AT1G70060 1426 / 0.0 SIN3-like 4 (.1) Lus10032181 [exp] 1163 / 0 AT5G15020 1362 / 0.0 SIN3-like 2 (.1.2) Lus10029217 [exp] 1122 / 0 AT1G70060 912 / 0.0 SIN3-like 4 (.1) Lus10010729 [exp] 1097 / 0 AT1G70060 1191 / 0.0 SIN3-like 4 (.1) Lus10014504 [exp] 771 / 0 AT3G01320 897 / 0.0 SIN3-like 1 (.1.2) Lus10014505 [exp] 345 / 5e-105 AT5G15020 449 / 2e-144 SIN3-like 2 (.1.2) Lus10029218 [exp] 256 / 2e-75 AT1G24190 270 / 4e-81 ARABIDOPSIS THALIANA SIN3 HOMOLOG, SIN3-like 3 (.1.2) Lus10030816 [exp] 145 / 1e-39 AT1G59890 140 / 8e-39 SIN3-like 5 (.1.2.3.4) Lus10030814 [exp] 135 / 4e-36 AT1G70060 130 / 2e-35 SIN3-like 4 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF16879 [poplar] [flax] Sin3a_C C-terminal domain of Sin3a protein
Representative CDS sequence Show only first row Show all	>Potri.010G038700.8 pacid=42797320 polypeptide=Potri.010G038700.8.p locus=Potri.010G038700 ID=Potri.010G038700.8.v4.1 annot-version=v4.1 ATGAAGAGGTCAAGAGATGATGTTTACATGGGGTCTCAGCTTAAAAGGCCGGTGCTCTCTTCTTCTACTAAAGGCGAAACTTCTGGGCAACCCCAGATGA TCGGAGGAGGTGGCGGTGGCGGGGGAGGACAGAAACTTACAACAAATGATGCCTTGGCATACCTCAAGGCTGTCAAGGATATATTTCAAGACAACAGAGA AAAATACGACGAGTTTCTTGAGGTCATGAAGGATTTTAAAGCTCAAAGAATTGACACTGCAGGTGTCATAGCGAGGGTGAAGGAGTTATTTAAAGGGCAC CGTGACTTAATTTTGGGTTTCAATACCTTCTTGCCAAAAGGATATGAGATCACTCTCCCACTAGAAGATGAACAGCCTCCACAGAAAAAGCCAGTTGAAT TTGAAGAAGCAATTAATTTTGTGAATAAAATTAAGACAAGGTTTCAAGGTGATGATCGTGTTTACAAATCATTTTTAGACATTCTGAACCTGTACAGAAA GGAAAATAAGTCCATCAGTGAGGTCTACCAGGAGGTGGCTTCACTTTTTCGAGACCACCATGATCTGCTCTTGGAGTTTACTCATTTCCTTCCAGATTCT TCAGCTGCTGCCAGTGCTCATTTTCCAACTGGTAGGAATCCTGCTCTTCGTGATAGAAGCTCTGCCATGCCTACAATGCGCCAGATGCATGTTGACAAGA AAGAAAGGGCTACTGCTTCACATGCTGATCGTGACTTCAGTGTCGACCGTCCCGATCCAGACCATGATAGATCTATGATCAGAGCAGATAAGGATCAACG CAGGCGTGCTGAAAAAGAAAAGGAGAGGAGAGAAGATAGAGATAGGAGGGAACGTGAGCGGGATGATAGAGATTATGATCATGATGGCAATCGAGACTTC AACATGCAACGACTCCCTCACAAGCGGAAATCTGCTCCTAGGGTTGAAGATTCAGTTGCTGAACAAGGTGGGGATGGTGATGAGACCTTTGGAGGAATGA ATCCTGTTTCATCCGCTTATGATGATAAAAATACTGTAAAAAGTGCGTTAAGTCAAGAGCTTGCCTTTTGCGACAAAGTCAAGGAGACGTTGCTCGATCC TGATAATTACCAGGAATTTTTGAGGTGTCTTCATCTCTACACCAGAGAAATAATCACTCGATCAGAGTTGCAATCTTTGGTGGGTGATTTGCTTGGAAGA TATCCTGATCTCATGGATGATTTCAATGAATTTTTGGCTCGTTGTGAAAAAAATGAGGGTTTACTTGCCGGTGTTGTGAGTAAAAAATCCCTGTGGAATG AAGGTAATTTACCCAGAGCTGTTAAAGTAGAGGACCGGGATAGAGATCGGGATCGTGAGAGAGATGATGGGGTTAAAGATAGAGACCGTGAAATCCGAGA AAGGGATAGGCTCGACAAAAGTGTAACCTTTGGAAATAAGGACACAGGAGGTCACAAGATGTCTTTATTTTCCAGCAAGGACAAGTTTACAGCAAAACCC ATTAATGAACTTGACTTGTCTAACTGTGAGCGCTGCAGTCCCAGTTATCGGCTTCTGCCAAAGAGTTACATGATACCTTCTGCAAGTCAGAGGACAGAGC TTGGAGCTGAAGTATTGAATGATCATTGGGTATCTGTTACTTCAGGAAGTGAAGATTACTCTTTTAAACATATGCGAAAAAACCAGTATGAAGAGAGCTT GTTTCGATGTGAAGATGACAGGTTTGAGCTGGACATGTTGTTAGAATCTGTGAATGTAACAACCAAGCGTGTGGAAGAATTATTAGAAAAGATCAACAAT AACACCATCAAAATGGATAGTCCCATTCGTATTGATGAGCACTTAACAGCTCTGAATCTGAGGTGTATTGAACGTTTATATGGCGATCATGGGCTTGATG TAATGGATGTATTGAGGAAGAACACTTCTCTTGCTTTGCCAGTTGTATTAACCCGCTTGAAGCAGAAACAAGAAGAGTGGGCAAGGTGTCGTGCTGACTT TAACAAAGTTTGGGCTGAAATTTATGCCAAAAACTATCACAAATCACTCGATCATCGTAGCTTCTATTTCAAGCAGCAGGATACAAAGAGCTCGAGCACA AAAGCCTTACTGGTGGAGATCAAAGAAATTAGTGAGAATAAGCGCAAGGAAGATGATGTGCTTCTTGCTTTTGCTGCTGGAAACAGACGACCTATTATAC CAAATTTGGAATTTGAGTACCCAGATACTGACATTCATGAGGACTTATATCAACTCATCAAATATTCATGTGGAGAAGTTTGTACATCTGAACAGTTAGA TAAAGTGATGAAGATTTGGACAACCTTTTTAGAACCCATGCTTGGTGTTCCGTCTCGACCTCAAGGTGCCGAGGACACTGAAGATGTTGTAAAAGCTAAG AATCAGTCTTCTAAAAGTGGAGAGAGCGAAGGCAGCCCTAGTGGTGCTGGTGCTGCAGTCACAAACTCCAAACATTCAAACTCTTCAAGAAATGGAGATG AAAGTATCCCACCTGAACAATCAAGTTCTAGCAGGGCTTGGATGCTAAATGGCGATAACAGGATTAAAGAAAATGGTCCTCCTGATGCAGATCATGTAGC TCGCAAAAGTGATACTTCCACAAGTGCTCTTCAACATGATAAGGTGGTGATTAATGCAGCTGCATCTGCAGCTGCAGCTGAAGAATTGTCAGGGATCACT AAACAAGCTGCTTCCAATGACCGGCTGCTAAATTCAAATGTATCTCTTGCCACTGGAGAGTTAAGTAATGGGCGAACACTTGTACAATCAGGGCTTAGTG CTACTCCTTCAAGACCAAGCAATGGCACTGTTGAGGGAGGGCTTGGAATAGGTTCGAGTAATGAAATATTACCTTCAACAGAGGCTGGTGAGTTTTCAAG ACCCACTGTATCCACAAATGGGGTAGCAACAGAAGTCATCAAGAATCACAGATATAATGATGAATCTGCTGCACAATTTAAAATTGAAAGAGAAGAGGGT GAATTATCTCCAAATGGAGATTTTGAGGAGGATAATTTTGCATTTTATGGAGAAGCTGGTTTGGAGGCAGCGCATAAGGCGAAGGACAGTGCTGTTAGTA GGCAATATCAAGCCAGACAGGGAGAAGGATGTGGAGAGGCAGGAGGAGAGAATGATGCTGATGCTGATGATGAAGGTGATGAAAGTGCTCAAAGGTCAAC AGAGGATAGTGAGAATGCATCTGAGAATGGTGATGTTTCTGGAAGTGAGTCTGGTGATGGTGAAGATTGTTCTCGGGAAGAGCATGAGGAAGATGGTGAC CATGATGAGCATGATATTAAAGCTGAGAGTGAAGGTGAGGCTGAAGGAATGGCTGATGCCCATGATGTTGAAGGAGATGGAACAATGTTACCATTTTCAG AACGATTTCTTCTAAATGTGAAGCCTTTGGCAAAGCATGTCCCTCCTTCATTGCATGACAAAGAAAAAGTTTCTCGGGTTTTCTACGGAAATGATTCCTT CTATGTTCTTTTTAGGCTTCACCAAACATTATACGAGAGAATACAATCTGCAAAGGTGAATTCATCATCTGCTGAAAGGAAATGGAGAGCTTCAAATGAT ACTAGCCCTACTGATCTCTATGCCAGATTCATGAGTGCACTTTACAACTTACTTGATGGTTCTTCTGATAATACAAAATTTGAGGATGATTGCCGAGCTA TTATTGGGACACAGTCATATGTTCTATTCACATTGGACAAACTAATATATAAGCTTGTCAAACAGCTCCAAACGGTAGCAGCAGATGAGATGGACAACAA GTTGCTCCAACTATATGCATATGAAAAATCAAGGAAACCTGGAAGACTTGTGGATATTGTTTATCACGAAAATGCTCGAGTGCTTCTTCACGATGAGAAC ATATATCGCATTGAATGTTCTTCCGCACCAACACACTTGTCTATTCAGCTTATGGACTTTGGACATGATAAACCTGAAGTGACTGCTGTTTCCATGGATC CTAATTTTGCATCTTATCTGCTTAATGATTTCCTCCCAGTTGTTCCTGACAAAAAAGAAAAGCCAGGGATTTTCCTGAAGAGGAATAAACGTAGAAATGC AAATTCTGATGAGTGCCAGGCCATGGAAGGTTTTCGGGTTTTCAATGGTTTAGAGTGTAAAATTGCATGCAATTCATCCAAGGTATCCTATGTTTTAGAT ACAGAAGATTTTTTGTTTCGAACGGGAAGGAAAAGCAGAACTTTGCAGCAGAATGGCTCCTGCCACAACCAGGAGAAGATTTCGAAAAGAGTACAACGGT TTCACAGATGGCTATCTAGCAAATAA
AA sequence Show only first row Show all	>Potri.010G038700.8 pacid=42797320 polypeptide=Potri.010G038700.8.p locus=Potri.010G038700 ID=Potri.010G038700.8.v4.1 annot-version=v4.1 MKRSRDDVYMGSQLKRPVLSSSTKGETSGQPQMIGGGGGGGGGQKLTTNDALAYLKAVKDIFQDNREKYDEFLEVMKDFKAQRIDTAGVIARVKELFKGH RDLILGFNTFLPKGYEITLPLEDEQPPQKKPVEFEEAINFVNKIKTRFQGDDRVYKSFLDILNLYRKENKSISEVYQEVASLFRDHHDLLLEFTHFLPDS SAAASAHFPTGRNPALRDRSSAMPTMRQMHVDKKERATASHADRDFSVDRPDPDHDRSMIRADKDQRRRAEKEKERREDRDRRERERDDRDYDHDGNRDF NMQRLPHKRKSAPRVEDSVAEQGGDGDETFGGMNPVSSAYDDKNTVKSALSQELAFCDKVKETLLDPDNYQEFLRCLHLYTREIITRSELQSLVGDLLGR YPDLMDDFNEFLARCEKNEGLLAGVVSKKSLWNEGNLPRAVKVEDRDRDRDRERDDGVKDRDREIRERDRLDKSVTFGNKDTGGHKMSLFSSKDKFTAKP INELDLSNCERCSPSYRLLPKSYMIPSASQRTELGAEVLNDHWVSVTSGSEDYSFKHMRKNQYEESLFRCEDDRFELDMLLESVNVTTKRVEELLEKINN NTIKMDSPIRIDEHLTALNLRCIERLYGDHGLDVMDVLRKNTSLALPVVLTRLKQKQEEWARCRADFNKVWAEIYAKNYHKSLDHRSFYFKQQDTKSSST KALLVEIKEISENKRKEDDVLLAFAAGNRRPIIPNLEFEYPDTDIHEDLYQLIKYSCGEVCTSEQLDKVMKIWTTFLEPMLGVPSRPQGAEDTEDVVKAK NQSSKSGESEGSPSGAGAAVTNSKHSNSSRNGDESIPPEQSSSSRAWMLNGDNRIKENGPPDADHVARKSDTSTSALQHDKVVINAAASAAAAEELSGIT KQAASNDRLLNSNVSLATGELSNGRTLVQSGLSATPSRPSNGTVEGGLGIGSSNEILPSTEAGEFSRPTVSTNGVATEVIKNHRYNDESAAQFKIEREEG ELSPNGDFEEDNFAFYGEAGLEAAHKAKDSAVSRQYQARQGEGCGEAGGENDADADDEGDESAQRSTEDSENASENGDVSGSESGDGEDCSREEHEEDGD HDEHDIKAESEGEAEGMADAHDVEGDGTMLPFSERFLLNVKPLAKHVPPSLHDKEKVSRVFYGNDSFYVLFRLHQTLYERIQSAKVNSSSAERKWRASND TSPTDLYARFMSALYNLLDGSSDNTKFEDDCRAIIGTQSYVLFTLDKLIYKLVKQLQTVAADEMDNKLLQLYAYEKSRKPGRLVDIVYHENARVLLHDEN IYRIECSSAPTHLSIQLMDFGHDKPEVTAVSMDPNFASYLLNDFLPVVPDKKEKPGIFLKRNKRRNANSDECQAMEGFRVFNGLECKIACNSSKVSYVLD TEDFLFRTGRKSRTLQQNGSCHNQEKISKRVQRFHRWLSSK

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G70060		SNL4	SIN3-like 4 (.1)		Potri.010G038700 [exp]	0	1
AT1G24190		SNL3, AtSin3	ARABIDOPSIS THALIANA SIN3 HOMO...		Potri.008G192200 [exp]	1.73	0.8598	SNT901
AT3G15470			Transducin/WD40 repeat-like su...		Potri.001G403400 [exp]	2.44	0.8258
AT1G07990			SIT4 phosphatase-associated fa...		Potri.009G014700 [exp]	6.92	0.7470
AT5G11700			unknown protein		Potri.018G058300 [exp]	7.00	0.7900
AT2G25730			unknown protein		Potri.006G244900 [exp]	7.34	0.8330
AT1G24460		TNO1	TGN-localized SYP41 interactin...		Potri.010G052600 [exp]	8.00	0.7885
AT1G63490			transcription factor jumonji (...		Potri.003G126600 [exp]	8.06	0.8061
AT1G77300		ASHH2, CCR1, SD...	LAZARUS 2, CAROTENOID CHLOROPL...		Potri.002G079100 [exp]	10.09	0.7567
AT1G33360			ATP-dependent Clp protease (.1...		Potri.013G089500 [exp]	11.35	0.7160
AT3G17850			Protein kinase superfamily pro...		Potri.015G035600 [exp]	11.83	0.7866

Compare expression of checked genes

Potri.010G038700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.