Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G27210 480 / 6e-163 ARM repeat superfamily protein (.1) AT5G62580 336 / 4e-107 ARM repeat superfamily protein (.1) AT2G07170 206 / 5e-57 ARM repeat superfamily protein (.1) AT4G27060 182 / 2e-48 CN, SPR2, TOR1 TORTIFOLIA 1, SPIRAL 2, CONVOLUTA, ARM repeat superfamily protein (.1) AT1G50890 168 / 9e-44 ARM repeat superfamily protein (.1) AT1G59850 72 / 3e-13 ARM repeat superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G192100 [exp] 984 / 0 AT1G27210 474 / 3e-160 ARM repeat superfamily protein (.1) Potri.015G069200 [exp] 415 / 2e-137 AT5G62580 366 / 9e-119 ARM repeat superfamily protein (.1) Potri.012G074400 [exp] 392 / 2e-128 AT5G62580 332 / 9e-106 ARM repeat superfamily protein (.1) Potri.006G079500 [exp] 185 / 1e-49 AT2G07170 793 / 0.0 ARM repeat superfamily protein (.1) Potri.001G421200 [exp] 183 / 1e-48 AT4G27060 884 / 0.0 TORTIFOLIA 1, SPIRAL 2, CONVOLUTA, ARM repeat superfamily protein (.1) Potri.011G136700 [exp] 163 / 5e-42 AT4G27060 855 / 0.0 TORTIFOLIA 1, SPIRAL 2, CONVOLUTA, ARM repeat superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010730 [exp] 572 / 0 AT1G27210 459 / 8e-155 ARM repeat superfamily protein (.1) Lus10036675 [exp] 437 / 9e-148 AT1G27210 353 / 3e-115 ARM repeat superfamily protein (.1) Lus10033129 [exp] 352 / 3e-113 AT5G62580 507 / 8e-174 ARM repeat superfamily protein (.1) Lus10036647 [exp] 345 / 2e-110 AT5G62580 496 / 2e-169 ARM repeat superfamily protein (.1) Lus10027590 [exp] 196 / 2e-53 AT2G07170 702 / 0.0 ARM repeat superfamily protein (.1) Lus10011149 [exp] 135 / 5e-33 AT4G27060 911 / 0.0 TORTIFOLIA 1, SPIRAL 2, CONVOLUTA, ARM repeat superfamily protein (.1) Lus10043053 [exp] 132 / 5e-32 AT4G27060 891 / 0.0 TORTIFOLIA 1, SPIRAL 2, CONVOLUTA, ARM repeat superfamily protein (.1) Lus10040047 [exp] 132 / 1e-31 AT4G27060 801 / 0.0 TORTIFOLIA 1, SPIRAL 2, CONVOLUTA, ARM repeat superfamily protein (.1) Lus10008545 [exp] 114 / 4e-26 AT2G07170 550 / 0.0 ARM repeat superfamily protein (.1) Lus10019616 [exp] 100 / 5e-23 AT4G27060 254 / 2e-78 TORTIFOLIA 1, SPIRAL 2, CONVOLUTA, ARM repeat superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [poplar] [flax] TPR PF02985 [poplar] [flax] HEAT HEAT repeat CL0020 [poplar] [flax] TPR PF12765 [poplar] [flax] Cohesin_HEAT HEAT repeat associated with sister chromatid cohesion
Representative CDS sequence Show only first row Show all	>Potri.010G038900.2 pacid=42799453 polypeptide=Potri.010G038900.2.p locus=Potri.010G038900 ID=Potri.010G038900.2.v4.1 annot-version=v4.1 ATGTCTCCTCTCCAAAAACCGCCGGTTGTCAATGATCTCAAGCACCGTGTCATAATCTGTCTCAACAAGCTCTCTGACCGTGACACTGTCTCCGTTGCCA CCACAGAGCTCGAGTCTATAGCTAAAAACTTGTCTACTCCCGACTCCTTCTCACATTTCCTAAACTGTATTCACAACACTGATTCCTCCTCTAAATCTCC TGTCCGAAAACAATGCGTCTCTCTTTTAACTCTCCTCTCTCGCTCCCATGGCAACTCCCTCTCACCCCACCTCTCCAAAATGATATCCACCATCACTCGC CGCCTCCGCGACCCCGACTCTGCCGTCCGCTCTGCCTGCGTCGAAGCCACCTTCGCCATGTCTTCTCAGATCACGGACCCCCCCTTCTCAACTCTCTCCA AGCCGCTTATTGACTTGCTGACTATTGACCAGGATCTCAACGCTCAGATCGGGGCAGCCTTGTGTTTGGCGGCGGTCATTGAGGCAGCGCCAGAGCCAGA GGTAGAGCAGTTGAGGAAGGTGCTGCCGAGGCTTGGAAAGCTGGTTAAAGGAGAGGGGTTTAAAGCTAAGGCGGCTTTGTTGAGTGTGATTAGGAGTATT GTTGGCGTTGGTGGGGCGTCAAGTAAGGGAATTTTGGATTGGTTAGTGCCGTGTTTGGTTGAGTTTTTGTGTAGTGAAGATTGGGCCGCCAGAAAAGCCG CTGCTGAGGCCTTAGGGAAGGTGGCATCAATAGAGAAGAAGTTGGCGAAGGAACATAAAGCTACATGTTTGACTTCTCTAGAGACCAGGAGGTTTGATAA GGTGAAGGTGGTCAGGGAGACTATGAATCGTACATTGGAGTTGTGGAAGGAAGTACCAGGCATTTCTCAGGAAAGTTCAGTTCCATCTCAATCTACATGT TCTTCTATAGATAATGTTGTTGGTATATGCATCTCCTCTGCCTCCAAAAATTCTAAAGACGTTGGTTTCAGAACTCCTTTATCTAAGAAAACAGTCCCTG CAATTAGGTTCCCTCCTTCCGATGCTTCACCCGTGACAGCTGCCAAAAAACAAAGCCCCGCAAAGAGCAATGACCACAATTCAAAGACAGGAATGTTACA TAAGCTGGGCCATGATAGACACTCTGCTTGGAAAATTGAAATTGCTACACCAGAAGGAAAAGTTAGCGGTGATGATACGAGGAATGATTCTGAAGTTTTG GGATCAGGGCAGAATGGGGATGGAACAAGTTCTATGCGAGAAACAAGACGTGTCCTCTTCGGTAGCATCCGAGATGATAAATGGAACAAGTTCGGTGGTT TGAAATCTGGGTCACGCGTGGTTCCATTTCAGGAGGATGAAAACTGTTACAACAAAGTTGTTGAAGTGAGCAGTTCTGCTGAAGATTTTTATGAGAACCA CAAAGATTATGAGGATCTGTCTTTAATCCGTGAACAGCTTATTCAGATTGAAAACCAGCAGTCTAGTCTTTTAGACCTTCTCCAGGGATACATCGGGAGG TCCCAGGTTGGTATAAACTCTCTCGAGACACGTGTTCATGGCCTGGAGATGGCAGTTAATGAAATTTCATATGATTTGGCAGTATCAAGTGGAAGAATTC CTAAAACTAACTATGCAGAGAACACATGTTGCAATCTTCCTGGTGCAGAATTCCTGAGTTCGAAGTTTTGGAGAACAGAATGCCGGTATGTTAGTAATGT TCCTGTTAAGAATGCTCGCATTGAAACATGCAACCCAGGAAGCCAAAGATATCAGCATCAGAATAGGGGTGGATTTGCTGTGAACACATCGGCAGGTTAT TCCAGCATAAATGGGCGGAATTCAGGATTCTATACTAGTCAAATGGCAAATAACACAAGTCGAGATGAACCTAAGCAGCAGGTTTCCTCCTAA
AA sequence Show only first row Show all	>Potri.010G038900.2 pacid=42799453 polypeptide=Potri.010G038900.2.p locus=Potri.010G038900 ID=Potri.010G038900.2.v4.1 annot-version=v4.1 MSPLQKPPVVNDLKHRVIICLNKLSDRDTVSVATTELESIAKNLSTPDSFSHFLNCIHNTDSSSKSPVRKQCVSLLTLLSRSHGNSLSPHLSKMISTITR RLRDPDSAVRSACVEATFAMSSQITDPPFSTLSKPLIDLLTIDQDLNAQIGAALCLAAVIEAAPEPEVEQLRKVLPRLGKLVKGEGFKAKAALLSVIRSI VGVGGASSKGILDWLVPCLVEFLCSEDWAARKAAAEALGKVASIEKKLAKEHKATCLTSLETRRFDKVKVVRETMNRTLELWKEVPGISQESSVPSQSTC SSIDNVVGICISSASKNSKDVGFRTPLSKKTVPAIRFPPSDASPVTAAKKQSPAKSNDHNSKTGMLHKLGHDRHSAWKIEIATPEGKVSGDDTRNDSEVL GSGQNGDGTSSMRETRRVLFGSIRDDKWNKFGGLKSGSRVVPFQEDENCYNKVVEVSSSAEDFYENHKDYEDLSLIREQLIQIENQQSSLLDLLQGYIGR SQVGINSLETRVHGLEMAVNEISYDLAVSSGRIPKTNYAENTCCNLPGAEFLSSKFWRTECRYVSNVPVKNARIETCNPGSQRYQHQNRGGFAVNTSAGY SSINGRNSGFYTSQMANNTSRDEPKQQVSS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G27210			ARM repeat superfamily protein...		Potri.010G038900 [exp]	0	1
AT5G18830	SBP	ATSPL7, SPL7	squamosa promoter binding prot...		Potri.008G197000 [exp]	1.73	0.9226	Pt-SPL7.2
AT5G06390		FLA17	FASCICLIN-like arabinogalactan...		Potri.006G200300 [exp]	1.73	0.9389
AT4G39050			Kinesin motor family protein (...		Potri.004G161100 [exp]	2.82	0.9139
AT4G27060		CN, SPR2, TOR1	TORTIFOLIA 1, SPIRAL 2, CONVOL...		Potri.011G136700 [exp]	3.46	0.9103
AT5G06390		FLA17	FASCICLIN-like arabinogalactan...		Potri.010G244900 [exp]	4.69	0.9299
AT1G27850			unknown protein		Potri.008G178600 [exp]	4.89	0.8832
AT4G39070	CO		B-box zinc finger family prote...		Potri.004G161000 [exp]	5.47	0.8756
AT5G42710			unknown protein		Potri.002G261700 [exp]	6.63	0.9019
AT3G60680			Plant protein of unknown funct...		Potri.014G066600 [exp]	9.79	0.8898
AT2G40270			Protein kinase family protein ...		Potri.009G075400 [exp]	12.36	0.9041

Compare expression of checked genes

Potri.010G038900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.