Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G27200 582 / 0 Domain of unknown function (DUF23) (.1) AT3G27330 428 / 1e-139 zinc finger (C3HC4-type RING finger) family protein (.1) AT5G40720 415 / 1e-138 Domain of unknown function (DUF23) (.1) AT4G37420 281 / 5e-87 Domain of unknown function (DUF23) (.1) AT5G44670 50 / 5e-06 Domain of unknown function (DUF23) (.1) AT2G33570 47 / 4e-05 Domain of unknown function (DUF23) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G192000 [exp] 974 / 0 AT1G27200 585 / 0.0 Domain of unknown function (DUF23) (.1) Potri.001G336766 [exp] 424 / 4e-142 AT3G27330 637 / 0.0 zinc finger (C3HC4-type RING finger) family protein (.1) Potri.005G252100 [exp] 297 / 1e-92 AT4G37420 540 / 0.0 Domain of unknown function (DUF23) (.1) Potri.003G156600 [exp] 42 / 0.001 AT5G44670 598 / 0.0 Domain of unknown function (DUF23) (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030815 [exp] 624 / 0 AT1G27200 577 / 0.0 Domain of unknown function (DUF23) (.1) Lus10013291 [exp] 606 / 0 AT1G27200 577 / 0.0 Domain of unknown function (DUF23) (.1) Lus10036676 [exp] 589 / 0 AT1G27200 543 / 0.0 Domain of unknown function (DUF23) (.1) Lus10010731 [exp] 581 / 0 AT1G27200 555 / 0.0 Domain of unknown function (DUF23) (.1) Lus10032118 [exp] 414 / 3e-138 AT3G27330 570 / 0.0 zinc finger (C3HC4-type RING finger) family protein (.1) Lus10014568 [exp] 409 / 3e-136 AT3G27330 573 / 0.0 zinc finger (C3HC4-type RING finger) family protein (.1) Lus10013221 [exp] 308 / 4e-97 AT4G37420 469 / 9e-160 Domain of unknown function (DUF23) (.1) Lus10016022 [exp] 278 / 2e-86 AT4G37420 488 / 6e-168 Domain of unknown function (DUF23) (.1) Lus10012255 [exp] 250 / 4e-75 AT4G37420 437 / 2e-147 Domain of unknown function (DUF23) (.1) Lus10030740 [exp] 157 / 3e-41 AT4G37420 292 / 3e-92 Domain of unknown function (DUF23) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0110 [poplar] [flax] GT-A PF13704 [poplar] [flax] Glyco_tranf_2_4 Glycosyl transferase family 2
Representative CDS sequence Show only first row Show all	>Potri.010G039000.1 pacid=42798560 polypeptide=Potri.010G039000.1.p locus=Potri.010G039000 ID=Potri.010G039000.1.v4.1 annot-version=v4.1 ATGGATTCTGAGCAAAGGCGGAAGAGAAAGCAGCAGGGAAGAATATATAGACCAGCATGTGCCAAGTTGTTATTAGTAAGGTCTCTAACTGTATGCTTAT CTTTCTTAGTATTTCTTTTGTTCATTTCGTCGGATCGTTTACCAATCCGTAGGGACGGGTCGTTTCGTCCAGTTCTGAGGACTTCCACTATGTCCCTCTT GCCTGCTTTTCTAACCGGTGGTGGTGGTGGTGGTGGTATATCCCAGTATCAAAATTTAGTAGTAGAAGGCAGGGTGTTGTTGCCTGACCACTTAGTGTTA ATCGTTTCCAGTAAATTAACTCCACCAACTGATAATTTAGACTGTGTTTACTACGACAATATGCTTGAACGAGTTGTGTTAAAGCCTGTTATATCTGTTG ATGGATATCATCAACAGTTGAAGTCCATTGTGAGGTGCCACCTTCCGCCTCTTAATTTTTCTGCTTCAGTTAATTTGCGAGGGCGAGGGTGGAGTGGCGA TGTCGTGGTGGAAAGACGTGAATGGTTGTTGCGGCTTAATCAGAGTGTGGTTCCTTCCTGGAACAAGGTGGTTTATGAGGCAGTTTTGGATTCGAATGGT TACACTAGTAATGTGGTTGTGTTTGCTAAAGGATTGAATCTTCGGCCGCATAGAGAAGCCGATGCTAGGAAATTCAGGTGCCACTTCAGTTTGACTGATT TTGATCAAGGATTATTTGTGTTCAATACTCGAGCAATTGCAGCTGCTCAAGAAGTTTTTCGGTGTTTGTTGCCTCCTAGTATTCTAAACAATCTAGATAA GGCTAAGGACATTCGAGTTAGTGTTAGCCGTGTTGATTACAATGTTGAAGGTGCAGATGAAGCTCCTCTGCCTTCGGTCGCCAAAGTTCAAATTATCAAC TCCCATGAGCACAAGAGTAACACTGGGAAGTATGAGCTCTGTGCTTGCACCATGCTGTGGAACCAAGCCTCTTTCCTTCGGGAGTGGATTATCTATCACG CCTGGCTTGGAATCGAGCGATGGTTCATATATGACAACAATAGCGATGATGAGGTTCAAGAAGTTATTGATGAGCTTAATTTGCACAAGTACAATATCAC TAGGCATGCTTGGCCATGGGTTAAGACACAAGAGGCAGGCTTTTCGCACTGTGCTTTGAGAGCAAAACATGAATGCAAGTGGCTTGGATTCTTTGATGTT GATGAGTTTTTCTACTTCCCACATCGACGGGGACGATATAAACCTGGACCAAATTCACTACGAGCCCTCGTCATGAAATACTCAGATTCACCAAAAATTG CAGAGCTAAGAACGGTTTGCCACAGCTATGGGCCATCTGGATTGACATCACCTCCATCACAGGGTGTAACTGTAGGTTATACCTGTCGGCTTGAGGCTCC GGAGAGACACAAATCCGTTGTGCGCCCAGAGCTCCTTCATACAACTCTTCTTAATGCGGTGCATCATTTTAAACTACGGGATGGATACAAATACCTGAAC GTGCGAGAGAGCAAGGTTTTAGTGAACCACTACAAATACCAGGTGTGGGATTCCTTTAAAGCCAAGTTCTTTAGAAGAGTTTCGACCTATGTCACTAACT GGCAAGAGGACCACAATAAGGGATCAAAGGATAGAGCGCCAGGTCTAGGGACAGAGGCCATTGAACCTCCCGATTGGCGGCTTCGGTTCTGCGAGGTTTG GGACACTGGCCTCAAGCATTTTGTTATGGCCAATCTTGCCGATTCGACGTCTGGGTTCCTTCCCTGGGAGAGGTCCCTCACGTAA
AA sequence Show only first row Show all	>Potri.010G039000.1 pacid=42798560 polypeptide=Potri.010G039000.1.p locus=Potri.010G039000 ID=Potri.010G039000.1.v4.1 annot-version=v4.1 MDSEQRRKRKQQGRIYRPACAKLLLVRSLTVCLSFLVFLLFISSDRLPIRRDGSFRPVLRTSTMSLLPAFLTGGGGGGGISQYQNLVVEGRVLLPDHLVL IVSSKLTPPTDNLDCVYYDNMLERVVLKPVISVDGYHQQLKSIVRCHLPPLNFSASVNLRGRGWSGDVVVERREWLLRLNQSVVPSWNKVVYEAVLDSNG YTSNVVVFAKGLNLRPHREADARKFRCHFSLTDFDQGLFVFNTRAIAAAQEVFRCLLPPSILNNLDKAKDIRVSVSRVDYNVEGADEAPLPSVAKVQIIN SHEHKSNTGKYELCACTMLWNQASFLREWIIYHAWLGIERWFIYDNNSDDEVQEVIDELNLHKYNITRHAWPWVKTQEAGFSHCALRAKHECKWLGFFDV DEFFYFPHRRGRYKPGPNSLRALVMKYSDSPKIAELRTVCHSYGPSGLTSPPSQGVTVGYTCRLEAPERHKSVVRPELLHTTLLNAVHHFKLRDGYKYLN VRESKVLVNHYKYQVWDSFKAKFFRRVSTYVTNWQEDHNKGSKDRAPGLGTEAIEPPDWRLRFCEVWDTGLKHFVMANLADSTSGFLPWERSLT

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G27200			Domain of unknown function (DU...		Potri.010G039000 [exp]	0	1
AT5G43470		HRT, RCY1, RPP8	RECOGNITION OF PERONOSPORA PAR...		Potri.003G149800 [exp]	2.64	0.8902
AT3G57450			unknown protein		Potri.016G055901 [exp]	3.00	0.8611
AT3G56880			VQ motif-containing protein (....		Potri.016G029600 [exp]	6.48	0.8305
AT3G15210	AP2_ERF	ATERF4, RAP2.5...	RELATED TO AP2 5, ethylene res...		Potri.011G115600 [exp]	10.00	0.7941	ERF49,Pt-RAP2.2
AT4G17490	AP2_ERF	ERF-6-6, ATERF6	ethylene responsive element bi...		Potri.001G154200 [exp]	10.39	0.8197	Pt-ERF5.2,ERF4
AT2G36430			Plant protein of unknown funct...		Potri.007G013800 [exp]	12.72	0.7888
AT3G46620			zinc finger (C3HC4-type RING f...		Potri.009G034800 [exp]	12.96	0.8232
AT3G05345			Chaperone DnaJ-domain superfam...		Potri.005G031466 [exp]	15.55	0.8103
AT2G42040			unknown protein		Potri.016G059400 [exp]	16.06	0.7407
AT2G40140	C3HZnF	ATSZF2, CZF1, Z...	\(SALT-INDUCIBLE ZINC FINGER 2...		Potri.008G069400 [exp]	18.43	0.8463

Compare expression of checked genes

Potri.010G039000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.