Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	Pt-PP2.1
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G10430 609 / 0 PP2A-2 protein phosphatase 2A-2 (.1) AT1G59830 608 / 0 PP2A-1 protein phosphatase 2A-2 (.1.2) AT1G69960 600 / 0 PP2A serine/threonine protein phosphatase 2A (.1) AT2G42500 526 / 0 PP2A-3, PP2A-4 protein phosphatase 2A-3 (.1.2.3) AT3G58500 525 / 0 PP2A-4, EP7, PP2A-3 protein phosphatase 2A-4 (.1) AT5G55260 434 / 1e-154 EP128, PPX-2, PPX2 PROTEIN PHOSPHATASE X -2, protein phosphatase X 2 (.1) AT4G26720 433 / 5e-154 PPX-1, EP129, EP124, PPX1 PROTEIN PHOSPHATASE X-1, protein phosphatase X 1 (.1) AT3G19980 365 / 4e-127 STPP, ATFYPP3, EMB2736 SERINE/THREONINE PROTEIN PHOSPHATASE, EMBRYO DEFECTIVE 2736, "flower-specific, phytochrome-associated protein phosphatase 3", flower-specific, phytochrome-associated protein phosphatase 3 (.1) AT1G50370 362 / 4e-126 AtFYPP1 flower- specific, phytochrome-associated protein phosphatase 1, Calcineurin-like metallo-phosphoesterase superfamily protein (.1) AT2G29400 286 / 8e-96 PP1-AT, TOPP1 type one protein phosphatase 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G191600 [exp] 630 / 0 AT1G10430 610 / 0.0 protein phosphatase 2A-2 (.1) Potri.015G068300 [exp] 608 / 0 AT1G10430 606 / 0.0 protein phosphatase 2A-2 (.1) Potri.012G073300 [exp] 605 / 0 AT1G10430 605 / 0.0 protein phosphatase 2A-2 (.1) Potri.003G217900 [exp] 534 / 0 AT2G42500 627 / 0.0 protein phosphatase 2A-3 (.1.2.3) Potri.001G007800 [exp] 532 / 0 AT2G42500 628 / 0.0 protein phosphatase 2A-3 (.1.2.3) Potri.006G196100 [exp] 526 / 0 AT3G58500 620 / 0.0 protein phosphatase 2A-4 (.1) Potri.016G062000 [exp] 526 / 0 AT3G58500 622 / 0.0 protein phosphatase 2A-4 (.1) Potri.011G092200 [exp] 432 / 9e-154 AT5G55260 613 / 0.0 PROTEIN PHOSPHATASE X -2, protein phosphatase X 2 (.1) Potri.001G358700 [exp] 429 / 2e-152 AT5G55260 609 / 0.0 PROTEIN PHOSPHATASE X -2, protein phosphatase X 2 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013287 [exp] 610 / 0 AT1G10430 617 / 0.0 protein phosphatase 2A-2 (.1) Lus10030810 [exp] 610 / 0 AT1G10430 617 / 0.0 protein phosphatase 2A-2 (.1) Lus10042160 [exp] 606 / 0 AT1G10430 611 / 0.0 protein phosphatase 2A-2 (.1) Lus10033122 [exp] 602 / 0 AT1G10430 606 / 0.0 protein phosphatase 2A-2 (.1) Lus10036657 [exp] 593 / 0 AT1G10430 598 / 0.0 protein phosphatase 2A-2 (.1) Lus10025174 [exp] 533 / 0 AT2G42500 619 / 0.0 protein phosphatase 2A-3 (.1.2.3) Lus10004252 [exp] 531 / 0 AT1G69960 538 / 0.0 serine/threonine protein phosphatase 2A (.1) Lus10039185 [exp] 530 / 0 AT2G42500 624 / 0.0 protein phosphatase 2A-3 (.1.2.3) Lus10016053 [exp] 526 / 0 AT2G42500 610 / 0.0 protein phosphatase 2A-3 (.1.2.3) Lus10013754 [exp] 509 / 0 AT2G42500 601 / 0.0 protein phosphatase 2A-3 (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0163 [poplar] [flax] Calcineurin PF00149 [poplar] [flax] Metallophos Calcineurin-like phosphoesterase
Representative CDS sequence Show only first row Show all	>Potri.010G039700.2 pacid=42798800 polypeptide=Potri.010G039700.2.p locus=Potri.010G039700 ID=Potri.010G039700.2.v4.1 annot-version=v4.1 ATGCCGTCGTCGCACGGGGATCTGGACCGTCAGATCGAGCAGCTGATGGAGTGCAAGCCTTTGGGAGAGGCGGAGGTGAAGACGCTGTGCGATCAGGCGA GGGCGATTCTGGTGGAGGAGTGGAACGTGCAGCCTGTCAAATGTCCGGTCACCATTTGTGGCGATATTCACGGCCAGTTCTACGATCTCATCGAGCTCTT TAGGATAGGAGGGAATGCACCTGATACCAATTATCTCTTCATGGGAGATTACGTAGATCGTGGGTACTATTCAGTGGAGACGGTCACGCTCTTAGTGGCC TTGAAAGTTCGTTATAGAGATAGAATTACAATTCTTAGAGGAAACCATGAGAGCAGGCAGATTACTCAAGTGTATGGCTTTTATGATGAGTGCTTGAGAA AATATGGAAATGCTAATGTCTGGAAGTTTTTCACTGACCTTTTTGATTATCTACCCCTTACAGCCCTCATTGAGAGCCAGATCTTCTGTTTGCATGGAGG ACTTTCACCATCTCTTGATACGTTAGATAACATCCGAGCTTTAGACCGCATACAAGAGGTTCCACATGAAGGGCCAATGTGTGATCTCTTGTGGTCTGAT CCAGATGATCGTTGTGGGTGGGGAATATCTCCTCGTGGTGCTGGATATACATTTGGACAGGATATAGCTCATCTGTTCAACCATACTAATGGACTCACTT TAATTTCACGGGCTCACCAGCTTGTCATGGAAGGGTACAATTGGTGTCAGGAAAAGAATGTGGTTACTGTATTTAGTGCTCCAAACTATTGCTACCGTTG TGGTAATATGGCTGCAATTCTAGAGATTGGAGAGAATATGGACCAGAATTTCCTTCAATTTGATCCAGCACCCCGGCAAATTGAACCTGACACCACTCGC AAGACCCCTGATTATTTTTTGTAA
AA sequence Show only first row Show all	>Potri.010G039700.2 pacid=42798800 polypeptide=Potri.010G039700.2.p locus=Potri.010G039700 ID=Potri.010G039700.2.v4.1 annot-version=v4.1 MPSSHGDLDRQIEQLMECKPLGEAEVKTLCDQARAILVEEWNVQPVKCPVTICGDIHGQFYDLIELFRIGGNAPDTNYLFMGDYVDRGYYSVETVTLLVA LKVRYRDRITILRGNHESRQITQVYGFYDECLRKYGNANVWKFFTDLFDYLPLTALIESQIFCLHGGLSPSLDTLDNIRALDRIQEVPHEGPMCDLLWSD PDDRCGWGISPRGAGYTFGQDIAHLFNHTNGLTLISRAHQLVMEGYNWCQEKNVVTVFSAPNYCYRCGNMAAILEIGENMDQNFLQFDPAPRQIEPDTTR KTPDYFL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G10430		PP2A-2	protein phosphatase 2A-2 (.1)		Potri.010G039700 [exp]	0	1	Pt-PP2.1
AT2G21600		ATRER1B	endoplasmatic reticulum retrie...		Potri.002G034200 [exp]	2.82	0.8481	Pt-RER1.5
AT1G28490		OSM1, ATSYP61, ...	syntaxin of plants 61 (.1.2)		Potri.004G050800 [exp]	3.16	0.8742	SYP61.1
AT2G36300			Integral membrane Yip1 family ...		Potri.004G190800 [exp]	7.74	0.8314
AT1G02130		ARA5, AtRABD2a,...	ARABIDOPSIS THALIANA RAB D2A, ...		Potri.014G049400 [exp]	11.57	0.8754	RAB1.2
AT1G12440			A20/AN1-like zinc finger famil...		Potri.003G117100 [exp]	11.83	0.8343
AT1G09330		ECHIDNA, ECH	unknown protein		Potri.013G006250 [exp]	13.07	0.8705
AT3G22950		ATARFC1	ADP-ribosylation factor C1 (.1...		Potri.015G142600 [exp]	18.54	0.8193
AT3G12955			SAUR-like auxin-responsive pro...		Potri.011G143400 [exp]	22.36	0.8444	SAUR5
AT1G47830			SNARE-like superfamily protein...		Potri.005G238701 [exp]	24.81	0.8437
AT1G02130		ARA5, AtRABD2a,...	ARABIDOPSIS THALIANA RAB D2A, ...		Potri.001G080400 [exp]	25.84	0.8630

Compare expression of checked genes

Potri.010G039700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.