Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G69970 72 / 8e-18 CLE26 CLAVATA3/ESR-RELATED 26 (.1.2) AT3G28455 57 / 5e-12 CLE25 CLAVATA3/ESR-RELATED 25 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G191500 [exp] 119 / 3e-36 AT1G69970 64 / 2e-14 CLAVATA3/ESR-RELATED 26 (.1.2) Potri.017G074600 [exp] 69 / 1e-16 AT3G28455 67 / 3e-16 CLAVATA3/ESR-RELATED 25 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010735 [exp] 78 / 9e-20 AT1G69970 66 / 3e-15 CLAVATA3/ESR-RELATED 26 (.1.2) Lus10039460 [exp] 56 / 3e-11 AT3G28455 56 / 5e-12 CLAVATA3/ESR-RELATED 25 (.1) Lus10005836 [exp] 44 / 3e-06 AT3G28455 49 / 3e-08 CLAVATA3/ESR-RELATED 25 (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.010G039800.1 pacid=42796905 polypeptide=Potri.010G039800.1.p locus=Potri.010G039800 ID=Potri.010G039800.1.v4.1 annot-version=v4.1 ATGGGTTGCAGCGGTAGCAGTTGCTCTTTGTCTTTCAAGGTGTTGCTCGGGGGGATTGCAACGGTGGTGTTTGTAATGCTTTTGTTGGTTGGAGCCTTGG AAAGTGGAGCAACGTCCAAAATGACAACCAGCAGGCTAAATAGTGTTCAGGCTACTCAAAATGACCTGAAAGATGATCATGAAAAGGATGTGATAGGAAG AGAGAAGCTTGTTTACAATTCGGAGTTGGATCTCAACTACATGATGAGCAAGAGAAGAGTTCCTAACGGTCCAGATCCTATTCACAACAGGAGAGCTGGG AACTCCAAACGACCACCCGGACGAGCTTAG
AA sequence Show only first row Show all	>Potri.010G039800.1 pacid=42796905 polypeptide=Potri.010G039800.1.p locus=Potri.010G039800 ID=Potri.010G039800.1.v4.1 annot-version=v4.1 MGCSGSSCSLSFKVLLGGIATVVFVMLLLVGALESGATSKMTTSRLNSVQATQNDLKDDHEKDVIGREKLVYNSELDLNYMMSKRRVPNGPDPIHNRRAG NSKRPPGRA

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G69970		CLE26	CLAVATA3/ESR-RELATED 26 (.1.2)		Potri.010G039800 [exp]	0	1
AT1G69970		CLE26	CLAVATA3/ESR-RELATED 26 (.1.2)		Potri.008G191500 [exp]	1.41	0.9501
					Potri.006G225400 [exp]	3.46	0.9335
AT2G18196			Heavy metal transport/detoxifi...		Potri.011G149500 [exp]	4.47	0.9326
AT3G12090		TET6	tetraspanin6 (.1)		Potri.010G220300 [exp]	4.47	0.9229
AT5G04080			unknown protein		Potri.006G043300 [exp]	9.79	0.9037
AT4G17830			Peptidase M20/M25/M40 family p...		Potri.003G091100 [exp]	10.19	0.9027
AT1G10380			Putative membrane lipoprotein ...		Potri.007G094800 [exp]	11.61	0.8999
AT1G71692	MADS	XAL1, AGL12	XAANTAL1, AGAMOUS-like 12 (.1)		Potri.019G076800 [exp]	11.66	0.8993	AGL12.1
AT3G30340			nodulin MtN21 /EamA-like trans...		Potri.011G149000 [exp]	14.24	0.8886
AT1G77700			Pathogenesis-related thaumatin...		Potri.005G173900 [exp]	19.79	0.9085

Compare expression of checked genes

Potri.010G039800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.