Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	ALA3.3
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G59820 1963 / 0 ALA3 aminophospholipid ATPase 3 (.1) AT1G68710 978 / 0 ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein (.1) AT3G25610 971 / 0 ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein (.1) AT1G17500 961 / 0 ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein (.1) AT3G27870 953 / 0 ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein (.1) AT1G13210 953 / 0 ACA.L autoinhibited Ca2+/ATPase II, autoinhibited Ca2+/ATPase II (.1) AT3G13900 950 / 0 ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein (.1) AT1G26130 945 / 0 ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein (.1.2) AT1G72700 939 / 0 ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein (.1) AT1G54280 934 / 0 ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G191400 [exp] 2228 / 0 AT1G59820 1950 / 0.0 aminophospholipid ATPase 3 (.1) Potri.008G111200 [exp] 979 / 0 AT1G68710 1767 / 0.0 ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein (.1) Potri.010G132700 [exp] 977 / 0 AT1G68710 1753 / 0.0 ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein (.1) Potri.012G058000 [exp] 963 / 0 AT1G68710 1764 / 0.0 ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein (.1) Potri.001G349100 [exp] 925 / 0 AT3G27870 1687 / 0.0 ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein (.1) Potri.003G043300 [exp] 925 / 0 AT1G17500 1891 / 0.0 ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein (.1) Potri.001G197500 [exp] 912 / 0 AT1G17500 1902 / 0.0 ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein (.1) Potri.001G081200 [exp] 872 / 0 AT1G17500 1461 / 0.0 ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein (.1) Potri.006G109200 [exp] 687 / 0 AT5G04930 1321 / 0.0 aminophospholipid ATPase 1 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013286 [exp] 2084 / 0 AT1G59820 2015 / 0.0 aminophospholipid ATPase 3 (.1) Lus10030809 [exp] 2068 / 0 AT1G59820 2006 / 0.0 aminophospholipid ATPase 3 (.1) Lus10036682 [exp] 2012 / 0 AT1G59820 1990 / 0.0 aminophospholipid ATPase 3 (.1) Lus10019152 [exp] 1005 / 0 AT3G25610 1871 / 0.0 ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein (.1) Lus10035069 [exp] 958 / 0 AT3G25610 1783 / 0.0 ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein (.1) Lus10022238 [exp] 949 / 0 AT3G27870 1837 / 0.0 ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein (.1) Lus10035068 [exp] 946 / 0 AT1G68710 1677 / 0.0 ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein (.1) Lus10006881 [exp] 940 / 0 AT1G17500 1907 / 0.0 ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein (.1) Lus10008473 [exp] 934 / 0 AT1G17500 1914 / 0.0 ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein (.1) Lus10037622 [exp] 932 / 0 AT1G17500 1895 / 0.0 ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00122 [poplar] [flax] E1-E2_ATPase E1-E2 ATPase CL0137 [poplar] [flax] HAD PF12710 [poplar] [flax] HAD haloacid dehalogenase-like hydrolase CL0137 [poplar] [flax] PF16209 [poplar] [flax] PhoLip_ATPase_N Phospholipid-translocating ATPase N-terminal CL0137 [poplar] [flax] PF16212 [poplar] [flax] PhoLip_ATPase_C Phospholipid-translocating P-type ATPase C-terminal
Representative CDS sequence Show only first row Show all	>Potri.010G039900.1 pacid=42797398 polypeptide=Potri.010G039900.1.p locus=Potri.010G039900 ID=Potri.010G039900.1.v4.1 annot-version=v4.1 ATGAGTGGTGGATGGGAAAGGCTTAGGGGATCCAGATCGAGAACGACTCGCGACTCCAGCTTTCACACTCCGGCGCCGTCTCGGACTGTAACACTCGGCC GAGTCCAGCCTCAGGCCCCTGGTCACCGCACCATCTACTGCAATGATCGCGACGCCAATCTCCCTGTCAGATTCAAGGGAAATTCAATATCAACTACCAA GTACAACTTCTTTACATTTGTACCCAAAGGATTGTTTGAACAGTTCAGGCGGGTGGCGAATTGTTATTTTCTATTGATCTCGATCTTATCAATGACACCA ATCAGTCCTGTTAATCCAGTGACAAATGTCGTTCCTCTGAGCTTGGTGCTGCTTGTCTCTCTCATTAAGGAGGCATTTGAGGACTGGAAGCGTTTTCAGA ATGATATGGTAATTAACAACAGTCTTATAGACGTGTTGCAAGATGATAAGTGGGTGGCTGTACCATGGAAGAAGTTGCAGGTTGGAGATATTGTCAGGGT TAAGAAGGATGGATTCTTTCCTGCGGATCTGCTTTTCCTAGCAAGTACAAATGCAGATGGTGTCTGCTACACCGAGACTGCAAATTTGGACGGGGAAACA AATTTGAAGATCAGAAAGGCACTGGAAAGGACGTGGGATTACTTGACTCCTGATAAAGCTGCTGAATTTAAAGGTGAGATGCAGTGTGAGCAACCAAACA ATTCATTATACACTTTCACTGGGAATCTCATATTCCAAAAGCAAACGTTGCCTCTCACTCCAAACCAAATTCTTTTAAGAGGATGTAGTCTTAGGAACAC AGAGTACATTGTTGGTGCTGTTATTTTTACAGGTCATGAAACAAAGGTCATGATGAATTCCATGAATGTTCCTTCCAAGAGGAGTACTTTGGAGAGGAAA CTTGACAAACTTATACTTGCTCTTTTTGCAACGCTTTTCATTATGTGCCTCATCGGAGCTATTGGGAGTGGCATATTCATAAACCGCAAGTATTACTATC TACGTCTGGATAAAGCCGTGGCTGCAGAGTTTAACCCTGGCAACCGATTTGTGGTTGCAGCTCTAACTTTGTTTACCCTAATCACTTTATACTCGACAAT AATTCCCATCTCTTTATATGTTTCTATTGAGATGATTAAATTTATTCAGTCCACTCAATTTATCAATAAAGACCTACATATGTACCATGCTGAAACTAAC ACCCCTGCATCGGCTAGGACTTCCAATTTGAATGAGGAACTTGGACAGGTTGAATATATCTTTTCTGATAAAACTGGAACTTTAACAAGAAATTTAATGG AGTTCTTTAAGTGTTCAATCGGAGGAGAGGTTTATGGTTCTGGTGTCACTGAAATAGAGCTGGGAGGAGCACAACGGACTGGGATTAAATTTCAAGAAGT GCGGAAATCATCTACTGCAATTCAGGAGAAGGGGTTTAATTTTGATGATCATAGGCTTATGCGAGGAGCCTGGAGGAATGAACCCAACTCTGATACATGC AAGGAATTTTTCAGATGCCTTGCTATATGTCACACTGTTCTTCCTGAAGGAGATGAGTCCCCAGAGAAAATCACATATCAGGCTGCATCTCCTGATGAGG CTGCTTTAGTTACTGCTGCAAAGAACTTTGGTTTTTTCTTCTACAGGCGCACACCTACTATGATACATGTTCGTGAATCTCATGTGGAGAAGATGGGTAA AATCCAAGATGTGGCTTATGAAATTCTGAATGTTCTTGAGTTCAATAGCACAAGGAAGCGCCAGTCCGTTGTTTGTCGATATCCTAACGGTAGACTTGTA CTATACTGCAAGGGTGCTGATACTGTAATTTATGAGAGATTGGCTGCCGGAAATGATGATCTAAAGAAAGTAACTAGGGCACATTTGGAACAGTTTGGGT CTGCTGGATTACGTACCCTTTGCCTTGCGTATCGGGACTTGAGTCCTGAAACATATGAAAGCTGGAATGAGAAGTTTATCCAAGCTAAATCTTCTCTCAG AGATCGCGAGAAGAAATTAGATGAGGTGGCAGAACTTGTGGAAAAGGATCTTATTTTGATTGGAAGCACTGCTATAGAAGACAAGCTTCAAGAAGGAGTA CCAGCTTGCATTGAAACTCTTTCTAGAGCTGGGATTAAGGTTTGGGTGTTAACTGGGGACAAGATGGAAACAGCAATAAATATAGCTTATGCATGCAACT TGATTAACAATGATATGAAACAGTTCATTATCAGTTCGGAAACTGACGCAATTAGAGAAGTTGAAAACAGGGGTGACCAAGTGGAAATTGCACGCTTTAT AAAGGAAGAAGTAAAAAAAGAACTAAAGAAGTGCCTTGAGGAAGCGCAGCACTATTTACGCACTGTATCTGGACCAAAATTGGCACTTGTTATAGATGGG AAGTGTTTGATGTATGCATTGGACCCAACTTTACGAGTAATGTTGCTGAATTTGAGCTTGAATTGTCACTCAGTTGTTTGCTGCCGCGTTTCTCCTTTAC AGAAAGCACAGGTGACTAGTTTGGTCAAGAAGGGTGCACGTAAAATAACACTCAGTATAGGTGATGGTGCCAATGATGTAAGCATGATTCAAGCTGCACA TATTGGTATTGGAATAAGTGGGTTGGAAGGGATGCAAGCAGTGATGGCCAGTGATTTTGCAATTGCTCAGTTTCGCTTTCTTACAGATTTACTTCTTGTG CATGGACGGTGGTCATATCTTAGAATATGCAAGGTCATCACATACTTCTTTTACAAGAATCTTACATTCACTTTGACACAATTTTGGTTCACTTTTCAAA CTGGTTTTTCTGGTCAAAGATTCTACGATGATTGGTTCCAGTCATTGTATAATGTCATATTCACAGCCCTGCCGGTGATCATTGTTGGGCTTTTTGATAA GGATGTCAGTGCATCCCTTTCTAAGAAGTACCCTGAACTGTACAAGGAGGGAATAAGAAATGTCTTTTTCAAGTGGAGAGTTGTGATCACATGGGCTTGC TTTTCTGTGTATCAATCGCTTGTCTTCTATCACTTTGTGACCATCTCCAGTGCCAGTGGTAAAAATTCATCAGGCAAGATTTTTGGACTATGGGATATCA GCACGATGGCCTTCACTTGTGTTGTAATCACTGTCAACTTGCGTCTCCTGATGATATGTAATTCAATTACAAGGTGGCATTATATTAGTGTTGGAGGGAG CATTTTGGCATGGTTCATGTTCATTTTCATATATTCAGTTTTACGGGAAAATGTTTTTTTCGTCATATATGTGTTGATGAGTACAATCTATTTCTACCTC ACGGTTCTTCTCGTTCCTATTGTTGCGCTTCTTGGCGACTTCATTTACCAAGGGATTCAAAGATGTTTCTTCCCTTACGATTATCAGATTGTTCAGGAAA TTCACAGGCATGAGCCTGATGACAACACTAGGGCAGGATTACTGGAGGTTGCGAGCCAGCTCACACCACAGGAAGAAAGGAGCTATGCCATATCACAATT ACCACGAGAAATATCAAAACACACTGGCTTTGCTTTTGATTCACCTGGATACGAGTCATTTTTTGCCGCACAGCTAGGTGTATATGCTCCGCAGAAGGCG TGGGATGTAGCTCGGAGAGCCAGCATGAAGTCGAAACCAAAGATGCCCAAAAGGAACTAA
AA sequence Show only first row Show all	>Potri.010G039900.1 pacid=42797398 polypeptide=Potri.010G039900.1.p locus=Potri.010G039900 ID=Potri.010G039900.1.v4.1 annot-version=v4.1 MSGGWERLRGSRSRTTRDSSFHTPAPSRTVTLGRVQPQAPGHRTIYCNDRDANLPVRFKGNSISTTKYNFFTFVPKGLFEQFRRVANCYFLLISILSMTP ISPVNPVTNVVPLSLVLLVSLIKEAFEDWKRFQNDMVINNSLIDVLQDDKWVAVPWKKLQVGDIVRVKKDGFFPADLLFLASTNADGVCYTETANLDGET NLKIRKALERTWDYLTPDKAAEFKGEMQCEQPNNSLYTFTGNLIFQKQTLPLTPNQILLRGCSLRNTEYIVGAVIFTGHETKVMMNSMNVPSKRSTLERK LDKLILALFATLFIMCLIGAIGSGIFINRKYYYLRLDKAVAAEFNPGNRFVVAALTLFTLITLYSTIIPISLYVSIEMIKFIQSTQFINKDLHMYHAETN TPASARTSNLNEELGQVEYIFSDKTGTLTRNLMEFFKCSIGGEVYGSGVTEIELGGAQRTGIKFQEVRKSSTAIQEKGFNFDDHRLMRGAWRNEPNSDTC KEFFRCLAICHTVLPEGDESPEKITYQAASPDEAALVTAAKNFGFFFYRRTPTMIHVRESHVEKMGKIQDVAYEILNVLEFNSTRKRQSVVCRYPNGRLV LYCKGADTVIYERLAAGNDDLKKVTRAHLEQFGSAGLRTLCLAYRDLSPETYESWNEKFIQAKSSLRDREKKLDEVAELVEKDLILIGSTAIEDKLQEGV PACIETLSRAGIKVWVLTGDKMETAINIAYACNLINNDMKQFIISSETDAIREVENRGDQVEIARFIKEEVKKELKKCLEEAQHYLRTVSGPKLALVIDG KCLMYALDPTLRVMLLNLSLNCHSVVCCRVSPLQKAQVTSLVKKGARKITLSIGDGANDVSMIQAAHIGIGISGLEGMQAVMASDFAIAQFRFLTDLLLV HGRWSYLRICKVITYFFYKNLTFTLTQFWFTFQTGFSGQRFYDDWFQSLYNVIFTALPVIIVGLFDKDVSASLSKKYPELYKEGIRNVFFKWRVVITWAC FSVYQSLVFYHFVTISSASGKNSSGKIFGLWDISTMAFTCVVITVNLRLLMICNSITRWHYISVGGSILAWFMFIFIYSVLRENVFFVIYVLMSTIYFYL TVLLVPIVALLGDFIYQGIQRCFFPYDYQIVQEIHRHEPDDNTRAGLLEVASQLTPQEERSYAISQLPREISKHTGFAFDSPGYESFFAAQLGVYAPQKA WDVARRASMKSKPKMPKRN

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G59820		ALA3	aminophospholipid ATPase 3 (.1...		Potri.010G039900 [exp]	0	1	ALA3.3
AT3G15470			Transducin/WD40 repeat-like su...		Potri.011G122500 [exp]	1.00	0.8080
AT5G13480		FY	Transducin/WD40 repeat-like su...		Potri.003G197900 [exp]	4.89	0.6620
AT2G32910			DCD (Development and Cell Deat...		Potri.013G029200 [exp]	5.19	0.7170
AT1G24460		TNO1	TGN-localized SYP41 interactin...		Potri.010G052600 [exp]	5.29	0.7618
AT5G23110			Zinc finger, C3HC4 type (RING ...		Potri.005G093000 [exp]	8.71	0.7307
AT1G70060		SNL4	SIN3-like 4 (.1)		Potri.010G038700 [exp]	15.42	0.7208
AT3G23900			RNA recognition motif (RRM)-co...		Potri.017G058300 [exp]	15.49	0.7230
AT5G12400			DNA binding;zinc ion binding;D...		Potri.009G049100 [exp]	16.43	0.7332
AT3G47890			Ubiquitin carboxyl-terminal hy...		Potri.015G066500 [exp]	17.49	0.7225
AT1G51745			Tudor/PWWP/MBT superfamily pro...		Potri.003G045600 [exp]	18.33	0.6258

Compare expression of checked genes

Potri.010G039900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.