Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	CW14.3
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G59650 598 / 0 CW14 Protein of unknown function (DUF1336) (.1) AT1G10410 571 / 0 Protein of unknown function (DUF1336) (.1) AT3G29180 352 / 9e-116 Protein of unknown function (DUF1336) (.1), Protein of unknown function (DUF1336) (.2) AT5G39430 329 / 1e-106 Protein of unknown function (DUF1336) (.1) AT1G13970 319 / 7e-103 Protein of unknown function (DUF1336) (.1) AT5G35180 63 / 4e-10 Protein of unknown function (DUF1336) (.1), Protein of unknown function (DUF1336) (.2), Protein of unknown function (DUF1336) (.3), Protein of unknown function (DUF1336) (.4) AT3G54800 56 / 4e-08 Pleckstrin homology (PH) and lipid-binding START domains-containing protein (.1), Pleckstrin homology (PH) and lipid-binding START domains-containing protein (.2) AT5G24990 54 / 1e-07 Protein of unknown function (DUF1336) (.1) AT5G25010 44 / 0.0001 Protein of unknown function (DUF1336) (.1) AT5G25020 44 / 0.0002 Protein of unknown function (DUF1336) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G190500 [exp] 838 / 0 AT1G59650 579 / 0.0 Protein of unknown function (DUF1336) (.1) Potri.017G074800 [exp] 513 / 5e-179 AT1G59650 472 / 6e-164 Protein of unknown function (DUF1336) (.1) Potri.017G088000 [exp] 355 / 1e-116 AT3G29180 615 / 0.0 Protein of unknown function (DUF1336) (.1), Protein of unknown function (DUF1336) (.2) Potri.010G163100 [exp] 327 / 7e-106 AT1G13970 543 / 0.0 Protein of unknown function (DUF1336) (.1) Potri.008G038800 [exp] 60 / 3e-09 AT3G54800 922 / 0.0 Pleckstrin homology (PH) and lipid-binding START domains-containing protein (.1), Pleckstrin homology (PH) and lipid-binding START domains-containing protein (.2) Potri.010G223400 [exp] 56 / 4e-08 AT3G54800 922 / 0.0 Pleckstrin homology (PH) and lipid-binding START domains-containing protein (.1), Pleckstrin homology (PH) and lipid-binding START domains-containing protein (.2) Potri.009G011200 [exp] 54 / 2e-07 AT2G28320 1071 / 0.0 Pleckstrin homology (PH) and lipid-binding START domains-containing protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010740 [exp] 608 / 0 AT1G59650 610 / 0.0 Protein of unknown function (DUF1336) (.1) Lus10036683 [exp] 600 / 0 AT1G59650 603 / 0.0 Protein of unknown function (DUF1336) (.1) Lus10039463 [exp] 486 / 2e-167 AT1G59650 478 / 3e-165 Protein of unknown function (DUF1336) (.1) Lus10005831 [exp] 483 / 2e-166 AT1G59650 471 / 1e-162 Protein of unknown function (DUF1336) (.1) Lus10026633 [exp] 323 / 1e-104 AT1G13970 504 / 4e-176 Protein of unknown function (DUF1336) (.1) Lus10030425 [exp] 321 / 7e-104 AT1G13970 499 / 2e-174 Protein of unknown function (DUF1336) (.1) Lus10037132 [exp] 308 / 6e-99 AT3G29180 470 / 9e-163 Protein of unknown function (DUF1336) (.1), Protein of unknown function (DUF1336) (.2) Lus10000174 [exp] 164 / 5e-48 AT1G13970 224 / 2e-72 Protein of unknown function (DUF1336) (.1) Lus10036799 [exp] 147 / 8e-40 AT1G13970 181 / 7e-53 Protein of unknown function (DUF1336) (.1) Lus10019068 [exp] 69 / 3e-12 AT5G35180 589 / 0.0 Protein of unknown function (DUF1336) (.1), Protein of unknown function (DUF1336) (.2), Protein of unknown function (DUF1336) (.3), Protein of unknown function (DUF1336) (.4)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF07059 [poplar] [flax] DUF1336 Protein of unknown function (DUF1336)
Representative CDS sequence Show only first row Show all	>Potri.010G040100.5 pacid=42798122 polypeptide=Potri.010G040100.5.p locus=Potri.010G040100 ID=Potri.010G040100.5.v4.1 annot-version=v4.1 ATGGGAGCATGTGTGTCAACTCCAGAGGGGTGTGTGGGTGGCAGATTGAAGTCTTCAAAAAAGATGAAGATACGCAGGAAAGGCAAGAGAGGCACTGCTT TCAAGAGAAGATCAGTGCCGCCATCTAGAATGTTATCTGATGACAAGTCTGATGGCCCTGCTTCCGCTGCTCCTCCTCCTCATCACCTCCCTTCCTTCAC CAACCCCACTTTTCAAGGAAGTAAGGAGGAAGCATGGTTTGACTCAGCTGCAATATTGGAGTCTGATTGTGATGAAGATTTTGAAAGTGTTCCAGACGAT ATCTTATCTCTAAATGGATTTGACATTGTATCACTCTCAAGCACTGCATCTGGCAGAGTTGCCAATCATGGAGACTGTAATGTCAATATGCAACATTCCT CATTCACTGATCAGATGCAGAAGGCGGGGGATTTATCTGCAGGAAATTCTACACATGACTCCGTTAGTGAGGCTACTGAACAAACAAATATTCATGTCTT CAATTTAGATCATGTTGATTCTGTATCCAAGTCTGATGGACCTTCAAATGAAGTAAAGCAACCTGTGTTCCTCGATGAAATCACCTCTGCAGATGAAAAT GCTGGAGAGGAAGGATTATTAGACAATTGTGGAATTCTTCCAGGCAACTGTTTGCCTTGTCTTGCTTCAACTGTTCCACCTGTTGAAAAGAGGAGATCAC TTAGCTCCAGTCCACCAAGTGCAAGGAAAAAGGGTGCCTTAAAACTCCCATTCAAGTGGAAGGAAGGGAATTCTAGTAACACTTTATTTTCTTCAAAGAT GATTCTGCACAGACCAATAGCAGGTTCACAAGTACCCTTTTGCCCTATGGAAAAGAAAATGCTTGATTGTTGGTCTCATATTGAGCCATGCAGTTTCAAA GTTCGAGGACAAAGTTATTTCAGGGACAAGAAGAAGGAATTTGCTCCTAACTGTTCTGCATATTACCCATTTGGTGTTGATGTATTCTTGTCTCCACGAA AAGTTGATCATATTGCTCGGTTTGTGGACCTCCCAATTATTAACTCCGCTGGGAACTTCCCAACCATCCTTGTTGTAAATGTTCAGGTTCCTTTGTATCC TGCTGCAATTTTTCAGAGTGAAAGTGATGGAGAAGGAACAAATTTTGTTTTGTATTTTAAGCTTTCTGATAGTTACTCGAAGGAACTTCCAACCCACTTT CAAGAAAGTATCAGACGATTAATTGATGATGAAGTTGAAAAGGTCAAAGGCTTCCCTGTAGATACAATTGCATCCTTTCGGGAAAGGCTGAAGATATTGG GCCGTGTTGTAAATGTAGAAGATCTTCATTTAAGTGCTGCAGAAAGGAAACTCATGCAGGCTTACAATGAGAAACCTGTTCTTTCACGTCCTCAACATGA GTTTTACCTGGGAGATAACTACTTCGAGATTGACATCGATATGCATAGGTTCAGTTATATCTCTAGGAAAGGTTTTCAAGCATTCCTAGACAGGCTTAAA ATTTGTGTGCTGGATATTGGCCTCACAATTCAGGGGAACAAAGTAGAAGAGTTGCCAGAGCAGATCTTGTGCTGTATAAGATTAAACGGAATTGATTACA TGAAATACCACCAATTGGGGTTAAATCAAGAGCCGTTTGAATCTTTAAGTGGATAA
AA sequence Show only first row Show all	>Potri.010G040100.5 pacid=42798122 polypeptide=Potri.010G040100.5.p locus=Potri.010G040100 ID=Potri.010G040100.5.v4.1 annot-version=v4.1 MGACVSTPEGCVGGRLKSSKKMKIRRKGKRGTAFKRRSVPPSRMLSDDKSDGPASAAPPPHHLPSFTNPTFQGSKEEAWFDSAAILESDCDEDFESVPDD ILSLNGFDIVSLSSTASGRVANHGDCNVNMQHSSFTDQMQKAGDLSAGNSTHDSVSEATEQTNIHVFNLDHVDSVSKSDGPSNEVKQPVFLDEITSADEN AGEEGLLDNCGILPGNCLPCLASTVPPVEKRRSLSSSPPSARKKGALKLPFKWKEGNSSNTLFSSKMILHRPIAGSQVPFCPMEKKMLDCWSHIEPCSFK VRGQSYFRDKKKEFAPNCSAYYPFGVDVFLSPRKVDHIARFVDLPIINSAGNFPTILVVNVQVPLYPAAIFQSESDGEGTNFVLYFKLSDSYSKELPTHF QESIRRLIDDEVEKVKGFPVDTIASFRERLKILGRVVNVEDLHLSAAERKLMQAYNEKPVLSRPQHEFYLGDNYFEIDIDMHRFSYISRKGFQAFLDRLK ICVLDIGLTIQGNKVEELPEQILCCIRLNGIDYMKYHQLGLNQEPFESLSG

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G59650		CW14	Protein of unknown function (D...		Potri.010G040100 [exp]	0	1	CW14.3
					Potri.003G220866 [exp]	7.48	0.8020
AT2G45200		ATGOS12, GOS12	golgi snare 12 (.1.2)		Potri.002G145200 [exp]	7.74	0.8022
AT2G05630		ATG8D	Ubiquitin-like superfamily pro...		Potri.002G228800 [exp]	7.93	0.8107
AT5G42190		SKP1B, ASK2	Arabidopsis SKP-like 2, E3 ubi...		Potri.002G018700 [exp]	8.06	0.7996	Pt-SKP1.2
AT1G48160			signal recognition particle 19...		Potri.015G036700 [exp]	8.24	0.8026	Pt-SRP19.2
AT5G55990		ATCBL2, CBL2	calcineurin B-like protein 2 (...		Potri.001G371700 [exp]	18.02	0.7538	CBL2.2
AT5G20650		COPT5	copper transporter 5 (.1)		Potri.006G140700 [exp]	20.00	0.7386
AT3G22950		ATARFC1	ADP-ribosylation factor C1 (.1...		Potri.012G139900 [exp]	20.39	0.7296
AT2G35680			Phosphotyrosine protein phosph...		Potri.001G154700 [exp]	21.90	0.7596
AT4G24990		ATGP4	Ubiquitin family protein (.1)		Potri.015G101200 [exp]	22.62	0.7916

Compare expression of checked genes

Potri.010G040100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.