Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G23400 275 / 3e-83 Leucine-rich repeat (LRR) family protein (.1) AT4G08850 276 / 3e-80 Leucine-rich repeat receptor-like protein kinase family protein (.1.2) AT5G46330 268 / 9e-77 FLS2 FLAGELLIN-SENSITIVE 2, Leucine-rich receptor-like protein kinase family protein (.1) AT1G35710 265 / 4e-76 Protein kinase family protein with leucine-rich repeat domain (.1) AT5G56040 260 / 7e-75 Leucine-rich receptor-like protein kinase family protein (.1.2) AT5G63930 258 / 2e-73 Leucine-rich repeat protein kinase family protein (.1) AT5G01890 251 / 1e-71 Leucine-rich receptor-like protein kinase family protein (.1) AT3G24240 252 / 2e-71 Leucine-rich repeat receptor-like protein kinase family protein (.1) AT5G07280 251 / 5e-71 EXS, EMS1 EXTRA SPOROGENOUS CELLS, EXCESS MICROSPOROCYTES1, Leucine-rich repeat transmembrane protein kinase (.1) AT3G49670 250 / 5e-71 BAM2 BARELY ANY MERISTEM 2, Leucine-rich receptor-like protein kinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G016700 [exp] 420 / 4e-138 AT5G46330 286 / 5e-84 FLAGELLIN-SENSITIVE 2, Leucine-rich receptor-like protein kinase family protein (.1) Potri.005G117700 [exp] 372 / 2e-119 AT3G24240 240 / 1e-67 Leucine-rich repeat receptor-like protein kinase family protein (.1) Potri.005G031700 [exp] 287 / 7e-86 AT5G20480 368 / 3e-113 EF-TU receptor (.1) Potri.005G030800 [exp] 287 / 3e-84 AT3G47570 576 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.007G001000 [exp] 277 / 4e-84 AT5G23400 642 / 0.0 Leucine-rich repeat (LRR) family protein (.1) Potri.005G031300 [exp] 279 / 2e-81 AT3G47570 574 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.013G020900 [exp] 278 / 4e-81 AT3G47570 593 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.015G123700 [exp] 278 / 5e-81 AT4G08850 688 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1.2) Potri.019G120733 [exp] 281 / 6e-81 AT1G35710 796 / 0.0 Protein kinase family protein with leucine-rich repeat domain (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019036 [exp] 270 / 7e-78 AT4G08850 891 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1.2) Lus10019035 [exp] 270 / 8e-78 AT4G08850 861 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1.2) Lus10020935 [exp] 266 / 1e-76 AT4G08850 1011 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1.2) Lus10005017 [exp] 261 / 2e-76 AT4G08850 562 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1.2) Lus10008712 [exp] 265 / 6e-76 AT4G08850 1009 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1.2) Lus10028612 [exp] 262 / 5e-75 AT5G48940 1051 / 0.0 Leucine-rich repeat transmembrane protein kinase family protein (.1) Lus10033330 [exp] 258 / 1e-73 AT3G47570 783 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10023323 [exp] 258 / 3e-73 AT5G46330 1055 / 0.0 FLAGELLIN-SENSITIVE 2, Leucine-rich receptor-like protein kinase family protein (.1) Lus10013454 [exp] 241 / 6e-71 AT5G23400 536 / 0.0 Leucine-rich repeat (LRR) family protein (.1) Lus10030638 [exp] 249 / 1e-70 AT3G47570 771 / 0.0 Leucine-rich repeat protein kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0022 [poplar] [flax] LRR PF00560 [poplar] [flax] LRR_1 Leucine Rich Repeat CL0022 [poplar] [flax] PF08263 [poplar] [flax] LRRNT_2 Leucine rich repeat N-terminal domain CL0022 [poplar] [flax] LRR PF13855 [poplar] [flax] LRR_8 Leucine rich repeat
Representative CDS sequence Show only first row Show all	>Potri.010G040200.2 pacid=42799182 polypeptide=Potri.010G040200.2.p locus=Potri.010G040200 ID=Potri.010G040200.2.v4.1 annot-version=v4.1 ATGACAAAAGTAAAAGGCAAAACAGAGATCTTTGATCCACTCTACTTGCCTCTCCCAAGTTCTAGTCCTTGTACCCATTGTCAAGGAAAGTTCATTTCCT GCAAACCCAGCTCATTTTTCCACTTCCCCAAAAATAACTTGTTCTCAGGTATCAGTCTAGACAAAATGGCTTCTTGGCTGTTATGGCTGATTGTTGTGTT CACCATCATAACAGTTGGAAAGGGATGGCAAAATGGTCACCAAGTATGCCACCCCAATGACCTGAAAGGTCTAACTAGTTTCAAGGCTGGAATCCACGTC GATACTTCTAGCCGGCTGGCAAAGTGGGTTGGTCATGGTTGCTGCAGCTGGGAAGGCATTACCTGCGACGAAACAACAGGCAGGGTGACTGAAATCCGTC TTCCAGGATTCATTTCCACAAATGATTTCGTCTTCCAATCTCAGATGAGAGGGTTGCTGTCTCCTTCAATAACACTCGTGAGCTGTCTCCAAGTCATTGA TCTTGGTGGTCTGATAGGTCTTGCTGGCAGAATCCCACCATCAATTGGTTTGCGCCTCCCAAATCTCAGAAAGCTTTATCTATATGGAAACAAGCTCATC GGCCCAGTGCCTGATAGTATCGGTAAGCTGTCAAAACTTGAAGAACTTCACCTGTATGAGAATAGATTGTCTGGCTCTCTCCCATCAACCATGGGTAACC TTAAAAACCTTAACCAGCTACTTCTATATTCAAATGAACTAGCTGGTACGATACCTGATTCATTCACGAATTTGACGAATATTGTACAGATGGATCTTCA TAGCAATATTCTGACTGGTCATATACCAGAAAGGATTGGTGAAATGCAGGTATTGGAAAAACTCGATCTTTCGGGAAATCTCTTAACAGGTAAAATTCCA CTTTCATTAGCAAACTTAAATTCCATCTCAGAGTTGTACTTGGATACCAATCATCTAGAGGGTGAGATCCCATTTCCATCAAGTTTTGGCCAACTGTCTT CACTTGGCTTTCTTAGACTGGATGATAACCATCTAACTGGAAGGATACCAGCCAGTTTTGGAAATATGGTTTCTCTTCAGAGAGTTTCCCTGGCTAATAA CAAGTTTGAGGGGGTGATTCCCTCTAGTTTGGGCAATCTTTCAGCTTTGAAAGAATTGTATCTCTCTGGCAATCTATTATCTGGCCAAATACCAGAATCA GTAGGTCAACTCTCTCAACTCATCATGTTCAATGTATCTCACAATCAGATTCAAGGACCACTGCCTCATGAGTTGTCTTCCCTTGAAAATCTTCAAACAC TAGATTTGTCATTCAATCATCTTAACCTCATCTCCTTCCCACAGTGGCTAGCTGAATTGCCATCCCTTTCCAGGATATACTGTGCTAGATGTGGAATCCA AGGCGAAATTCCAGACTTCTTGCAAGCGACTCCCAGTCCAATACAGGAGCTGGACTTGTCCTCTAACCATCTCACTGGAAGCTTGCCGGCATGGCTGGGG CGCCTTACTCAGCTCTACAAATTAAACTTTTCAAGGAACTCACTTGTTTCAAGGATCCCTGTTTCAGTTAGAAATTTGCAGTATTTGGGTGTGCTTGATC TCCATTCAAACAAGCTAACAGGCCCAATAAATAATGTTTTTCAGATAGGAAATGCCTTTTCTGATGGTTCATTGACATATATTGATCTCTCCGATAACTA TTTCTCTACTGGTATTATACAAGCTGGAGTGGGCTCACAAACTGGGATTCAGTACCTCAACTTGTCCCATAATTTTCTTGGAGGGCGTATAACCACAACT ATAGGGAGATTGAAATCATTGCAAACATTGGATTTGAGCTGTAACAAGTTAGGTTTCAACTTGCCGGAGGCTTTAGCAAATGTTAGCTCCTTAGAGAAGC TGAAGCTGCAGAAAAACCACTTCACTGGCAGAATACCAGTTGGGTTTCTGAAGCTGAAAAGGCTGAAGGAACTGGATTTATCAGATAATCTTCTTGCAGG GGAGATTCCTGCAGGTAAACCATTAACTGACTTTCCCCAGAGTTCCTATTCTGGAAACAAAGGTTTATGCGGAAAGCCTCTTTCTCCCTGTAAGGTAAGA GGTTTACTTCTAGTTGAAGAACCTCTAAAACCATGCTAA
AA sequence Show only first row Show all	>Potri.010G040200.2 pacid=42799182 polypeptide=Potri.010G040200.2.p locus=Potri.010G040200 ID=Potri.010G040200.2.v4.1 annot-version=v4.1 MTKVKGKTEIFDPLYLPLPSSSPCTHCQGKFISCKPSSFFHFPKNNLFSGISLDKMASWLLWLIVVFTIITVGKGWQNGHQVCHPNDLKGLTSFKAGIHV DTSSRLAKWVGHGCCSWEGITCDETTGRVTEIRLPGFISTNDFVFQSQMRGLLSPSITLVSCLQVIDLGGLIGLAGRIPPSIGLRLPNLRKLYLYGNKLI GPVPDSIGKLSKLEELHLYENRLSGSLPSTMGNLKNLNQLLLYSNELAGTIPDSFTNLTNIVQMDLHSNILTGHIPERIGEMQVLEKLDLSGNLLTGKIP LSLANLNSISELYLDTNHLEGEIPFPSSFGQLSSLGFLRLDDNHLTGRIPASFGNMVSLQRVSLANNKFEGVIPSSLGNLSALKELYLSGNLLSGQIPES VGQLSQLIMFNVSHNQIQGPLPHELSSLENLQTLDLSFNHLNLISFPQWLAELPSLSRIYCARCGIQGEIPDFLQATPSPIQELDLSSNHLTGSLPAWLG RLTQLYKLNFSRNSLVSRIPVSVRNLQYLGVLDLHSNKLTGPINNVFQIGNAFSDGSLTYIDLSDNYFSTGIIQAGVGSQTGIQYLNLSHNFLGGRITTT IGRLKSLQTLDLSCNKLGFNLPEALANVSSLEKLKLQKNHFTGRIPVGFLKLKRLKELDLSDNLLAGEIPAGKPLTDFPQSSYSGNKGLCGKPLSPCKVR GLLLVEEPLKPC

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G23400			Leucine-rich repeat (LRR) fami...		Potri.010G040200 [exp]	0	1
AT3G09070			Protein of unknown function (D...		Potri.006G096600 [exp]	1.00	0.8710
AT3G20015			Eukaryotic aspartyl protease f...		Potri.005G063000 [exp]	3.46	0.8436
AT2G17230		EXL5	EXORDIUM like 5 (.1)		Potri.009G167800 [exp]	8.12	0.8356
AT1G01200		ATRAB-A3, AtRAB...	ARABIDOPSIS RAB GTPASE HOMOLOG...		Potri.014G102200 [exp]	8.36	0.8541
AT2G25270			unknown protein		Potri.018G023200 [exp]	23.93	0.8466
AT3G54260		TBL36	TRICHOME BIREFRINGENCE-LIKE 36...		Potri.008G020900 [exp]	25.19	0.8385
AT3G05030		ATNHX2, NHX2	sodium hydrogen exchanger 2 (....		Potri.010G031500 [exp]	25.51	0.8322	Pt-NHX1.1
AT5G62390		ATBAG7	BCL-2-associated athanogene 7 ...		Potri.012G126000 [exp]	25.69	0.7878	CBP.2
AT2G26640		KCS11	3-ketoacyl-CoA synthase 11 (.1...		Potri.006G249200 [exp]	30.98	0.7768
AT1G02180			ferredoxin-related (.1)		Potri.014G044500 [exp]	33.22	0.7520

Compare expression of checked genes

Potri.010G040200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.