Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G10380 337 / 3e-116 Putative membrane lipoprotein (.1) AT5G50290 100 / 4e-24 unknown protein AT3G17350 94 / 5e-22 unknown protein AT1G11915 84 / 2e-18 unknown protein AT1G21230 45 / 7e-05 WAK5 wall associated kinase 5 (.1) AT5G02070 44 / 7e-05 Protein kinase family protein (.1) AT1G21240 43 / 0.0002 WAK3 wall associated kinase 3 (.1) AT3G53840 42 / 0.0003 Protein kinase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G094800 [exp] 195 / 1e-60 AT1G10380 125 / 1e-33 Putative membrane lipoprotein (.1) Potri.010G158500 [exp] 194 / 3e-60 AT1G10380 164 / 1e-48 Putative membrane lipoprotein (.1) Potri.008G095900 [exp] 191 / 4e-59 AT1G10380 158 / 2e-46 Putative membrane lipoprotein (.1) Potri.015G078700 [exp] 104 / 7e-26 AT5G50290 387 / 4e-136 unknown protein Potri.010G152900 [exp] 96 / 5e-23 AT3G17350 339 / 4e-117 unknown protein Potri.008G099800 [exp] 96 / 1e-22 AT3G17350 332 / 2e-114 unknown protein Potri.011G007900 [exp] 82 / 2e-17 AT1G11915 379 / 6e-132 unknown protein Potri.004G007400 [exp] 79 / 1e-16 AT1G11915 360 / 1e-124 unknown protein Potri.008G125500 [exp] 56 / 1e-08 AT1G67000 309 / 3e-94 Protein kinase superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037235 [exp] 382 / 3e-134 AT1G10380 318 / 5e-109 Putative membrane lipoprotein (.1) Lus10036687 [exp] 376 / 7e-132 AT1G10380 316 / 2e-108 Putative membrane lipoprotein (.1) Lus10037078 [exp] 196 / 4e-60 AT1G10380 170 / 6e-50 Putative membrane lipoprotein (.1) Lus10036906 [exp] 162 / 2e-48 AT1G10380 129 / 4e-36 Putative membrane lipoprotein (.1) Lus10037237 [exp] 138 / 9e-41 AT1G10380 125 / 3e-36 Putative membrane lipoprotein (.1) Lus10036702 [exp] 137 / 5e-40 AT1G10380 110 / 4e-30 Putative membrane lipoprotein (.1) Lus10042105 [exp] 95 / 2e-22 AT5G50290 366 / 9e-128 unknown protein Lus10001236 [exp] 95 / 3e-22 AT5G50290 368 / 2e-128 unknown protein Lus10043098 [exp] 91 / 9e-21 AT3G17350 334 / 7e-115 unknown protein Lus10023362 [exp] 67 / 2e-12 AT1G11915 360 / 2e-124 unknown protein
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF13947 [poplar] [flax] GUB_WAK_bind Wall-associated receptor kinase galacturonan-binding PF14380 [poplar] [flax] WAK_assoc Wall-associated receptor kinase C-terminal
Representative CDS sequence Show only first row Show all	>Potri.010G040500.1 pacid=42796954 polypeptide=Potri.010G040500.1.p locus=Potri.010G040500 ID=Potri.010G040500.1.v4.1 annot-version=v4.1 ATGAAGGTCAAGCAATATTCTTGTGTCCTTCTTCTCTACTTCTTAACTCTCACAACCCTCTCCTCCTTGGTAGCCTCGCAAACCTGCAAGAACTCCTGTG GCCAAATTCCCATCAAGTATCCCTTTGGAACTGGCCTTGGCTGTGGGGATCCACGATTTCAACAATACGTGACTTGCAACCAAGAAAAGCTCACTTTAAC CACCCATACTGGCTGCTATCCGGTCACCAACATAGAATATTCCAGTCAAGTTATACACATCTCTGATCCCTCGATGTCAACCTGTGCTTGCACTCAAACA AGCAAAGGGTTTGGCCTAGACTGGGACGCTCCCTTCTCTTTTCACGACGATACAGTCTTTACTTTACTTGACTGCTCAACCACTTCATCACCTATCTACA GAACCAATGGCGCCTATGATGTTGATAGCAACACCACAGTAATCCCTCAGTGTGACAGAACAGGTGCACCCATTTGCAGTTTCTTATATTCTTGCAGAGC AATCAGTATGCTCAATCTTCCAATCTCTACCTGCTGTGTTTACACACCAGTAGATCTTGGGCCTTCTTTTGAAATGGATTTACAAAAGTTGCAATGCACT TCATACTCTGGGTTCTATAGCTTCAATGGCCAAGAATCTAACCCTGAAAACTGGAAGTATGGGATAGCACTTAAATACAAGTTCAATGTGTACAATGACT ATCCAAGTTCTTGTGCTAACTGCGAGAGAAGTAATGGAGTTTGTGGTTACGGCGGAGCTTACAACACATTTGTTTGTAACTGTCCTGGTGGCCTCAACAC AACATCAGATTGTTTCTTTCGATCACCATATAATCACAGTCCGAGGCTTCTCCCAAGGCACACTGCAGGCAATTTCTTGATCTTTTCATTGGCATACTTT ATGGTCCGGGTCCTCTTTTAG
AA sequence Show only first row Show all	>Potri.010G040500.1 pacid=42796954 polypeptide=Potri.010G040500.1.p locus=Potri.010G040500 ID=Potri.010G040500.1.v4.1 annot-version=v4.1 MKVKQYSCVLLLYFLTLTTLSSLVASQTCKNSCGQIPIKYPFGTGLGCGDPRFQQYVTCNQEKLTLTTHTGCYPVTNIEYSSQVIHISDPSMSTCACTQT SKGFGLDWDAPFSFHDDTVFTLLDCSTTSSPIYRTNGAYDVDSNTTVIPQCDRTGAPICSFLYSCRAISMLNLPISTCCVYTPVDLGPSFEMDLQKLQCT SYSGFYSFNGQESNPENWKYGIALKYKFNVYNDYPSSCANCERSNGVCGYGGAYNTFVCNCPGGLNTTSDCFFRSPYNHSPRLLPRHTAGNFLIFSLAYF MVRVLF

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G10380			Putative membrane lipoprotein ...		Potri.010G040500 [exp]	0	1
AT5G04980			DNAse I-like superfamily prote...		Potri.008G011000 [exp]	1.00	0.9209
AT3G20410		CPK9	calmodulin-domain protein kina...		Potri.007G042700 [exp]	1.41	0.9126
AT2G39840		TOPP4	type one serine/threonine prot...		Potri.010G071850 [exp]	3.00	0.8855
AT5G35090			unknown protein		Potri.018G114401 [exp]	3.16	0.8951
AT5G54855			Pollen Ole e 1 allergen and ex...		Potri.011G137100 [exp]	3.16	0.8677
AT5G02460	DOF	AtDof5. 1	Dof-type zinc finger DNA-bindi...		Potri.009G029500 [exp]	4.00	0.8868
AT1G10380			Putative membrane lipoprotein ...		Potri.007G094800 [exp]	4.24	0.9090
AT3G16500	AUX_IAA	IAA26, PAP1	indole-3-acetic acid inducible...		Potri.003G048100 [exp]	4.24	0.8421
					Potri.011G165300 [exp]	4.47	0.8969
					Potri.007G005400 [exp]	5.47	0.8456

Compare expression of checked genes

Potri.010G040500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.