Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G60220 410 / 5e-137 ULP1D, OTS1 OVERLY TOLERANT TO SALT 1, UB-like protease 1D (.1) AT1G10570 363 / 3e-119 ULP1C, OTS2 UB-LIKE PROTEASE 1C, OVERLY TOLERANT TO SALT 2, Cysteine proteinases superfamily protein (.1.2) AT1G09730 122 / 4e-29 Cysteine proteinases superfamily protein (.1.2) AT4G33620 120 / 1e-28 Cysteine proteinases superfamily protein (.1) AT4G00690 86 / 3e-18 ULP1B UB-like protease 1B (.1) AT4G15880 86 / 1e-17 ATESD4, ESD4 EARLY IN SHORT DAYS 4, Cysteine proteinases superfamily protein (.1) AT3G06910 71 / 1e-12 ULP1A, ELS1, AtULP1a ESD4-LIKE SUMO PROTEASE 1, UB-like protease 1A (.1) AT3G48480 69 / 2e-12 Cysteine proteinases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G105700 [exp] 155 / 9e-40 AT1G09730 580 / 0.0 Cysteine proteinases superfamily protein (.1.2) Potri.005G155600 [exp] 145 / 2e-36 AT1G09730 551 / 0.0 Cysteine proteinases superfamily protein (.1.2) Potri.017G044000 [exp] 138 / 3e-34 AT1G09730 452 / 4e-143 Cysteine proteinases superfamily protein (.1.2) Potri.007G115400 [exp] 135 / 3e-33 AT1G09730 427 / 3e-135 Cysteine proteinases superfamily protein (.1.2) Potri.010G180300 [exp] 76 / 9e-15 AT3G48480 278 / 3e-93 Cysteine proteinases superfamily protein (.1) Potri.015G090800 [exp] 71 / 2e-13 AT3G48480 228 / 8e-74 Cysteine proteinases superfamily protein (.1) Potri.008G221500 [exp] 69 / 3e-12 AT4G15880 436 / 3e-149 EARLY IN SHORT DAYS 4, Cysteine proteinases superfamily protein (.1) Potri.010G013700 [exp] 57 / 2e-08 AT4G15880 322 / 8e-104 EARLY IN SHORT DAYS 4, Cysteine proteinases superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030622 [exp] 339 / 5e-110 AT1G60220 253 / 7e-77 OVERLY TOLERANT TO SALT 1, UB-like protease 1D (.1) Lus10030867 [exp] 288 / 4e-91 AT1G60220 250 / 2e-76 OVERLY TOLERANT TO SALT 1, UB-like protease 1D (.1) Lus10000917 [exp] 147 / 2e-37 AT1G09730 514 / 1e-169 Cysteine proteinases superfamily protein (.1.2) Lus10020445 [exp] 125 / 6e-30 AT4G33620 404 / 6e-129 Cysteine proteinases superfamily protein (.1) Lus10023104 [exp] 85 / 4e-17 AT4G15880 407 / 5e-138 EARLY IN SHORT DAYS 4, Cysteine proteinases superfamily protein (.1) Lus10002875 [exp] 84 / 1e-16 AT4G15880 404 / 2e-136 EARLY IN SHORT DAYS 4, Cysteine proteinases superfamily protein (.1) Lus10035097 [exp] 56 / 2e-08 AT3G48480 146 / 4e-43 Cysteine proteinases superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0125 [poplar] [flax] Peptidase_CA PF02902 [poplar] [flax] Peptidase_C48 Ulp1 protease family, C-terminal catalytic domain
Representative CDS sequence Show only first row Show all	>Potri.010G040600.2 pacid=42797248 polypeptide=Potri.010G040600.2.p locus=Potri.010G040600 ID=Potri.010G040600.2.v4.1 annot-version=v4.1 ATGGGGGAAGAGAAGTCAAAGAAGAGACCACTGGACCTGGACTCAAACTGGGACGTGATCATGGGCAGAGACGACGGCGAACCACCGCCATTAGTGATCG TGAAAAACACGCCACAACCGCAACCACAGCCCACGCCGAGTCAGAGAGAGGACTTTGCTTCAATCTCCGATAAGAAGCTGGAGGAACAAATTGAGAGAAA CAAAATTCATGTTATGAAGTTAGGCCCTACATTGCCTGACAAAGGACAGAAGCTTCAACTTACTATTAAGGCCATGGAAGAAGAGCTTGATCAAAGAAAA CATCGTCGCCCTGCCCAAATGGATGTTGCTGAATGTGAGAAGCACAGAAACTCAACAGCTTCAAATGGGTTTGGACAAAAGGATGCATCATCATCTCAAG TCAAAAATTCAAAATCCCAATTTTCCACTATTTTTAGTAGAAAGATGGAAGAAAATACAGATTGTAGGGTAGGTAATGCATTCGATAAAGAATTGACGAC CTTGGGTCACTGTAATCGCCAAAATATGAGAAGTAATGGAAGGTCAGGGAAAAAGAGAAAACAGAACATACAGTCATCATCAAGACAGTTGCCTTTTCAA TTTGCTACCAGGGTCTCTCTTAATGGAGAAAGACGTGGACCTGCTAATGGTGATCAAAAGGGTAAAGCTTCTTCTGCTCATCTTTTACACCACAACAGCG AAAATTTCTCCACCAATTCCTCCAAGAAGAAGGATGATTGCCGAGTCCTGCCTTCAAATGGTTCAAGGCCTAGGAAGGATCCAACAGTTGTTGTCCTAGA CGAAGATGAACCTCAGCTAGGGACAACAGAGCTAGCAAAAGAATTGGCTGAACACATGAAGGATGCTAAGATCTCTTATCCATCAAGAGATGATCCAGCA TCTGTTGAAATTGCTTACAAGGATATGGATTGCCTTGCCCCTGAAGCTTTTTTGACATCGCCTATTATGAACTTTTACATCAGATATATACGTCTGCAAG CATCTCCAGCAAATAAGGCGACGTGTGATTATCACTTTTTTAACACATTCTTTTACAAGAAGCTGGAACAGGCCATATCATATAAGGGGAGTGACAAGGA ATCATTTTTTGTCAAGTTCAGAAGGTGGTGGAAAGGTGTCAATATATTTGAAAAGGCTTACATACTTATTCCCATACATGATGATCTTCATTGGAGCTTG GTGATTATATGTTTCCCGGATAAGAAAGATGAATCAGGACCAATTATTCTTCATTTAGATTCATTGGGATTTCATTGTAGCAGTACAGTATTTTCTAACA TTAAAAGTTATTTGAAAGAAGAATGGAGGTATATGAATCAAGAAGTTCCTACAGATTTTCCAATTCCAGATAGAATATGGAAACATCTAGATCGTAGAAT TGAGGACAAAATCATTGCGGTGCCCCAGCAGAAAAATGACTATGATTGTGGCCTCTTTGTACTTTTCTTCATGGAGCGCTTCATTCAAGAGGCTCCTGAG AGGCTGAAAAAGAGAGATCTGGCAATGTTTGGCAAGAAGTGGTTCAGACCTGAAGAGGCCTCTGATTTAAGAAAGAAAATCAGGGCTATACTTATGGATG AGTTTCAAAATGCGTTTAAGAGTGGTCATATTTCAGACTCTTCTTCTTTGTCTTCAGGTGGGGATCCTCCCTAA
AA sequence Show only first row Show all	>Potri.010G040600.2 pacid=42797248 polypeptide=Potri.010G040600.2.p locus=Potri.010G040600 ID=Potri.010G040600.2.v4.1 annot-version=v4.1 MGEEKSKKRPLDLDSNWDVIMGRDDGEPPPLVIVKNTPQPQPQPTPSQREDFASISDKKLEEQIERNKIHVMKLGPTLPDKGQKLQLTIKAMEEELDQRK HRRPAQMDVAECEKHRNSTASNGFGQKDASSSQVKNSKSQFSTIFSRKMEENTDCRVGNAFDKELTTLGHCNRQNMRSNGRSGKKRKQNIQSSSRQLPFQ FATRVSLNGERRGPANGDQKGKASSAHLLHHNSENFSTNSSKKKDDCRVLPSNGSRPRKDPTVVVLDEDEPQLGTTELAKELAEHMKDAKISYPSRDDPA SVEIAYKDMDCLAPEAFLTSPIMNFYIRYIRLQASPANKATCDYHFFNTFFYKKLEQAISYKGSDKESFFVKFRRWWKGVNIFEKAYILIPIHDDLHWSL VIICFPDKKDESGPIILHLDSLGFHCSSTVFSNIKSYLKEEWRYMNQEVPTDFPIPDRIWKHLDRRIEDKIIAVPQQKNDYDCGLFVLFFMERFIQEAPE RLKKRDLAMFGKKWFRPEEASDLRKKIRAILMDEFQNAFKSGHISDSSSLSSGGDPP

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G60220		ULP1D, OTS1	OVERLY TOLERANT TO SALT 1, UB-...		Potri.010G040600 [exp]	0	1
AT3G08720		ATPK2, ATPK19, ...	ARABIDOPSIS THALIANA SERINE/TH...		Potri.012G073700 [exp]	1.00	0.9031	CCSPK5.3
AT1G09730			Cysteine proteinases superfami...		Potri.007G115400 [exp]	2.00	0.8794
AT1G67580		CDKG;2	Protein kinase superfamily pro...		Potri.010G056900 [exp]	4.24	0.8882
AT5G28530	FAR1_related	FRS10	FAR1-related sequence 10 (.1)		Potri.016G007300 [exp]	7.21	0.8381
AT4G20090		EMB1025	embryo defective 1025, Pentatr...		Potri.003G154800 [exp]	8.83	0.8749
AT2G34930			disease resistance family prot...		Potri.012G034600 [exp]	10.09	0.8343
AT2G40770			zinc ion binding;DNA binding;h...		Potri.019G060900 [exp]	10.24	0.8802
AT1G67580		CDKG;2	Protein kinase superfamily pro...		Potri.008G178200 [exp]	10.24	0.8750
AT3G09360			Cyclin/Brf1-like TBP-binding p...		Potri.001G246100 [exp]	10.95	0.8633
AT3G17740			unknown protein		Potri.015G033300 [exp]	12.68	0.8725

Compare expression of checked genes

Potri.010G040600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.