Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G70370 819 / 0 PG2 polygalacturonase 2 (.1.2) AT1G23760 790 / 0 PG3, JP630 POLYGALACTURONASE 3, BURP domain-containing protein (.1) AT1G60390 743 / 0 PG1 polygalacturonase 1 (.1) AT5G25610 116 / 5e-28 ATRD22, RD22 RESPONSIVE TO DESSICATION 22, BURP domain-containing protein (.1) AT1G49320 94 / 4e-21 ATUSPL1 unknown seed protein like 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G190000 [exp] 1059 / 0 AT1G70370 841 / 0.0 polygalacturonase 2 (.1.2) Potri.012G079200 [exp] 731 / 0 AT1G70370 747 / 0.0 polygalacturonase 2 (.1.2) Potri.018G036700 [exp] 127 / 2e-31 AT5G25610 307 / 2e-101 RESPONSIVE TO DESSICATION 22, BURP domain-containing protein (.1) Potri.004G136900 [exp] 125 / 2e-31 AT5G25610 211 / 2e-65 RESPONSIVE TO DESSICATION 22, BURP domain-containing protein (.1) Potri.T012700 [exp] 125 / 3e-31 AT5G25610 214 / 2e-66 RESPONSIVE TO DESSICATION 22, BURP domain-containing protein (.1) Potri.004G136000 [exp] 124 / 3e-31 AT5G25610 211 / 3e-65 RESPONSIVE TO DESSICATION 22, BURP domain-containing protein (.1) Potri.006G243700 [exp] 124 / 5e-31 AT5G25610 319 / 4e-107 RESPONSIVE TO DESSICATION 22, BURP domain-containing protein (.1) Potri.006G243600 [exp] 124 / 2e-30 AT5G25610 299 / 2e-98 RESPONSIVE TO DESSICATION 22, BURP domain-containing protein (.1) Potri.T012500 [exp] 121 / 6e-30 AT5G25610 208 / 4e-64 RESPONSIVE TO DESSICATION 22, BURP domain-containing protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013009 [exp] 885 / 0 AT1G70370 834 / 0.0 polygalacturonase 2 (.1.2) Lus10029156 [exp] 870 / 0 AT1G70370 820 / 0.0 polygalacturonase 2 (.1.2) Lus10034881 [exp] 651 / 0 AT1G70370 682 / 0.0 polygalacturonase 2 (.1.2) Lus10033417 [exp] 645 / 0 AT1G70370 681 / 0.0 polygalacturonase 2 (.1.2) Lus10022114 [exp] 126 / 6e-31 AT5G25610 357 / 5e-121 RESPONSIVE TO DESSICATION 22, BURP domain-containing protein (.1) Lus10007674 [exp] 123 / 7e-30 AT5G25610 353 / 2e-119 RESPONSIVE TO DESSICATION 22, BURP domain-containing protein (.1) Lus10007011 [exp] 117 / 7e-29 AT1G49320 213 / 7e-68 unknown seed protein like 1 (.1) Lus10026333 [exp] 112 / 4e-28 AT1G49320 187 / 9e-59 unknown seed protein like 1 (.1) Lus10032324 [exp] 114 / 5e-28 AT1G49320 184 / 4e-57 unknown seed protein like 1 (.1) Lus10003263 [exp] 114 / 1e-27 AT5G25610 266 / 7e-87 RESPONSIVE TO DESSICATION 22, BURP domain-containing protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03181 [poplar] [flax] BURP BURP domain
Representative CDS sequence Show only first row Show all	>Potri.010G040800.1 pacid=42797154 polypeptide=Potri.010G040800.1.p locus=Potri.010G040800 ID=Potri.010G040800.1.v4.1 annot-version=v4.1 ATGCAAAATTTTCACCCCATTACCCTTCTTCTCTCCCTTTGCTTCCTCTCATTGCTCAATGTGAATTATGCAGCAGATGGGAGTAGTGATTCAGCAAACG GTGAGAGCCCATTCACGGCCAAGGCATCTCTAATTCGGTACTGGAACAAGGAGATCCACACGGGTTTACCAAAATCTGCTTTTCTCCTCTCCAAAGCCTC GCCATTGAGCCCTGTCGATTTGGCAACGTTTTCTAAACTCGCCTCCCAAAACGCTCTCTCCACTCAATTCCCAGCTTTTTGTTCCTCTGCCAAACTCTTC TGCTTCCCCGATTTGTCTCCCAGTCTTGAAAAGCATGACCAAGACTCCCATTTCGCCTTCTACTTCAACAAAAACTTCACCAATTACGGCACTGGTCGAG CTGGTGGAGCCGACTCTTTCAAGAACTACTCCGATGGGGTCAATCTCCCGGTTGACTCGTTCCGCCGGTACGGCCGGGACGCTGCTGGACACGACGAGAC ATTTTCCAATTATGCCCCTGAGACCAACGTTGCCGACCAGAGCTTTAACACCTACGGCGCAGGTGCCACCGGTGGCACTGGAGAGTTCAAGGGGTATAAT GTCAGGATAAACAAACCAGATCTCAGGTTTGTGTCCTACTCTGACGGTGCTAATGGGAAGGGCCAGAAGTTCTCGACTTATACAGAGGATGCGAATGCTG GAGACGAAGCTTTCACTAGTTATGGGAAGAATGGGAATGGAGTCCCGAACGAGTTCTCAGGTTATGGGAAGAGTTCGAATGTGATTGGTTCAGATTTCTC CAACTATGGTGAGGCTGGCAATGGGGCTAGTGATACTTTCAAGACTTACGGAGTTGATGGGAATGTTCCAGAGAATAATTACAAGAACTATGGCGATGGT GGGAATGGTGGTGTTGATAGCTTCGCCAATTACAGGGAAAAATCAAACGTGGGGGACGATTCCTTTCAGTCTTATGCCAAGAATTCGAATGCACAGAAAG CAGATTTCGTCAATTATGGAAAATCCTTTAATGAAGGGACTGATAAGTTCACTGGGTATGGGAAGGGGGCAGTGGGGCAGCAGATTGGGTTCAAGATCTA TGGAGTAAACACCACTTTCAAAGACTATGCCAGAAAAAAGGATGTCACTTTTTCCAAGTACACCAATGCAGGCACTGCTGATGCTTCGATGAAGGTAACT AGTGACAGTTCAGCAAATAAAAACAAGTGGGTAGAGCCCGGAAAATTCTTCCGGGAGTCAATGTTGAAGGAGGGAAGTGAGATGCCAATGCCGGACATTC GAGACAAAATGCCCAAAAGATCCTTTCTTCCCCGCTCCATCATCTCCAAAATACCGTTTTCCACGTCCAAAATGGGTCTGATAAAGGAGATTTTCCATGC CAGTGATAATTCAAGCATGGAGCGGATCATCTTGGATGCTGTTGAAGAGTGTGAGAGAGCACCCAGCCCAGGCGAGACCAAGCGCTGCGTGGGCTCGGCT GAGGACCTGATCGATTTTGTAATCTCTGTATTAGGCCGCAACGTGGCTGTCCGCACGACGGACAACGTGGAAGGGTCGAAGAAAAACGTCACGATTGGAA CGATCAAGGGGATCAACGGCGGGAGAGTGACGAAGTCAGTCTCTTGTCACCAGAGTCTCTATCCTTACCTGCTCTATTACTGCCACTCTGTTCCTAAAGT TCGGGTGTACGAAGCGGATCTCTTGGATCCCAATAGCAAGACCAAGATCAACCATGGTGTTGCCATCTGTCACCTGGACACATCCTCATGGAGCCCCACC CATGGTGCTTTCTTAGCTCTTGGTTCTGGTCCAGGTCGGATTGAGGTCTGTCACTGGATTTTTGAGAATGATATGACTTGGACTCTTGCTGAAGCCTCTT AG
AA sequence Show only first row Show all	>Potri.010G040800.1 pacid=42797154 polypeptide=Potri.010G040800.1.p locus=Potri.010G040800 ID=Potri.010G040800.1.v4.1 annot-version=v4.1 MQNFHPITLLLSLCFLSLLNVNYAADGSSDSANGESPFTAKASLIRYWNKEIHTGLPKSAFLLSKASPLSPVDLATFSKLASQNALSTQFPAFCSSAKLF CFPDLSPSLEKHDQDSHFAFYFNKNFTNYGTGRAGGADSFKNYSDGVNLPVDSFRRYGRDAAGHDETFSNYAPETNVADQSFNTYGAGATGGTGEFKGYN VRINKPDLRFVSYSDGANGKGQKFSTYTEDANAGDEAFTSYGKNGNGVPNEFSGYGKSSNVIGSDFSNYGEAGNGASDTFKTYGVDGNVPENNYKNYGDG GNGGVDSFANYREKSNVGDDSFQSYAKNSNAQKADFVNYGKSFNEGTDKFTGYGKGAVGQQIGFKIYGVNTTFKDYARKKDVTFSKYTNAGTADASMKVT SDSSANKNKWVEPGKFFRESMLKEGSEMPMPDIRDKMPKRSFLPRSIISKIPFSTSKMGLIKEIFHASDNSSMERIILDAVEECERAPSPGETKRCVGSA EDLIDFVISVLGRNVAVRTTDNVEGSKKNVTIGTIKGINGGRVTKSVSCHQSLYPYLLYYCHSVPKVRVYEADLLDPNSKTKINHGVAICHLDTSSWSPT HGAFLALGSGPGRIEVCHWIFENDMTWTLAEAS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G70370		PG2	polygalacturonase 2 (.1.2)		Potri.010G040800 [exp]	0	1
AT5G15350		AtENODL17	early nodulin-like protein 17 ...		Potri.003G183300 [exp]	3.46	0.8820
AT3G25700			Eukaryotic aspartyl protease f...		Potri.008G115900 [exp]	5.19	0.8825
AT2G42590		GENERALREGULATO...	general regulatory factor 9 (....		Potri.001G392200 [exp]	10.67	0.8755	Pt-GF14.4
AT3G19820		CBB1, EVE1, DW1...	ENHANCED VERY-LOW-FLUENCE RESP...		Potri.008G084800 [exp]	11.61	0.8770	DIM.2
AT4G34260		AXY8, FUC95A	ALTERED XYLOGLUCAN 8, 1,2-alph...		Potri.009G093900 [exp]	14.83	0.8615
AT1G17745		PGDH	D-3-phosphoglycerate dehydroge...		Potri.008G009500 [exp]	15.29	0.8122
AT2G42110			unknown protein		Potri.006G192500 [exp]	15.74	0.8845
AT3G19340			Protein of unknown function (D...		Potri.002G237700 [exp]	21.21	0.8299
AT5G56580		ANQ1, ATMKK6	ARABIDOPSIS THALIANA MAP KINAS...		Potri.018G068500 [exp]	26.07	0.8733	Pt-MKK6.1
AT2G05790			O-Glycosyl hydrolases family 1...		Potri.014G158400 [exp]	28.46	0.8501

Compare expression of checked genes

Potri.010G040800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.