Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G10600 256 / 2e-87 AMSH2 associated molecule with the SH3 domain of STAM 2 (.1.2.3) AT4G16144 213 / 1e-66 AMSH3 associated molecule with the SH3 domain of STAM 3 (.1) AT1G48790 211 / 5e-66 AMSH1 associated molecule with the SH3 domain of STAM 1 (.1) AT5G23540 46 / 8e-06 Mov34/MPN/PAD-1 family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G141100 [exp] 213 / 7e-67 AT4G16144 697 / 0.0 associated molecule with the SH3 domain of STAM 3 (.1) Potri.015G045800 [exp] 193 / 5e-59 AT1G48790 581 / 0.0 associated molecule with the SH3 domain of STAM 1 (.1) Potri.014G032900 [exp] 50 / 3e-07 AT5G23540 563 / 0.0 Mov34/MPN/PAD-1 family protein (.1.2) Potri.002G127900 [exp] 50 / 4e-07 AT5G23540 567 / 0.0 Mov34/MPN/PAD-1 family protein (.1.2) Potri.018G006100 [exp] 40 / 0.001 AT1G22920 589 / 0.0 ARABIDOPSIS JAB1 HOMOLOG 1, COP9 signalosome 5A (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030875 [exp] 310 / 4e-108 AT1G10600 311 / 2e-108 associated molecule with the SH3 domain of STAM 2 (.1.2.3) Lus10030613 [exp] 268 / 2e-91 AT1G10600 253 / 5e-85 associated molecule with the SH3 domain of STAM 2 (.1.2.3) Lus10036454 [exp] 207 / 2e-64 AT4G16144 645 / 0.0 associated molecule with the SH3 domain of STAM 3 (.1) Lus10009006 [exp] 197 / 2e-60 AT1G48790 589 / 0.0 associated molecule with the SH3 domain of STAM 1 (.1) Lus10009634 [exp] 125 / 2e-33 AT1G48790 536 / 0.0 associated molecule with the SH3 domain of STAM 1 (.1) Lus10031085 [exp] 51 / 1e-07 AT5G23540 599 / 0.0 Mov34/MPN/PAD-1 family protein (.1.2) Lus10035470 [exp] 51 / 1e-07 AT5G23540 601 / 0.0 Mov34/MPN/PAD-1 family protein (.1.2) Lus10042663 [exp] 47 / 5e-06 AT5G23540 616 / 0.0 Mov34/MPN/PAD-1 family protein (.1.2) Lus10021746 [exp] 47 / 5e-06 AT5G23540 618 / 0.0 Mov34/MPN/PAD-1 family protein (.1.2) Lus10020149 [exp] 40 / 0.0007 AT2G07560 469 / 1e-155 H\(+\)-ATPase 6, H\(+\)-ATPase 6, H(+)-ATPase 6 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0366 [poplar] [flax] JAB PF01398 [poplar] [flax] JAB JAB1/Mov34/MPN/PAD-1 ubiquitin protease
Representative CDS sequence Show only first row Show all	>Potri.010G041200.12 pacid=42798754 polypeptide=Potri.010G041200.12.p locus=Potri.010G041200 ID=Potri.010G041200.12.v4.1 annot-version=v4.1 ATGACTCAGACAGACAGCAAATGTGAGCATATCACCGTTCACACTGTTACTCAGACTTCTCCATGTCCTATACTCTCATGTGTAGAGAAAGCACCTAAAT ATGCTCATGTTTCACTTATACCAGTTGCTGATTCAGATCAAAGCTCATGCAATCAACCATCAGCATCCGGGGTCTTGCAAGATGTACACATAGAGCATGG AACCTATTACGTCACCACTCTAATAATACCAAAACAAGATTCAACTTCCTCTTCTTGCGAGGCTTTAAAAGAGGAAGAGTTTTTTGCCATACAGAATGAA CGTTCTCTTTTTCCTGTTGGGTGGATTCATACACATCCTTCTCAAAGCTGTTTCATGTCATCAATTGACCTACATACTCACTTTTCATATCAGGCAATGG TACCTGAGGCATTTGCCATTGTCATGGCTCCAACTGATCAGTCAAGGAGCTATGGAATATTCAGGTTATCTGACCCAGGTGGGATGAGTGTTCTGAAAGA GTGTGAAGAGTCAGGGTTTCATCCTCATGGAGAACCGGCAGATGGGAGCCCCATTTACGAGCACTGCGCCAATGTATTCACAAATACTAATCTGAGGTTT GAAATCTTTGACTTACGCTGA
AA sequence Show only first row Show all	>Potri.010G041200.12 pacid=42798754 polypeptide=Potri.010G041200.12.p locus=Potri.010G041200 ID=Potri.010G041200.12.v4.1 annot-version=v4.1 MTQTDSKCEHITVHTVTQTSPCPILSCVEKAPKYAHVSLIPVADSDQSSCNQPSASGVLQDVHIEHGTYYVTTLIIPKQDSTSSSCEALKEEEFFAIQNE RSLFPVGWIHTHPSQSCFMSSIDLHTHFSYQAMVPEAFAIVMAPTDQSRSYGIFRLSDPGGMSVLKECEESGFHPHGEPADGSPIYEHCANVFTNTNLRF EIFDLR

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G10600		AMSH2	associated molecule with the S...		Potri.010G041200 [exp]	0	1
AT3G62620			sucrose-phosphatase-related (....		Potri.002G198200 [exp]	1.73	0.8345
AT1G02680		TAF13	TBP-associated factor 13 (.1)		Potri.014G122500 [exp]	2.00	0.8351
AT3G14205			Phosphoinositide phosphatase f...		Potri.001G163900 [exp]	4.89	0.8151
AT1G55140			Ribonuclease III family protei...		Potri.003G038400 [exp]	5.00	0.8238
AT1G22940		THIE, TH-1, TH1	THIAMINEE, THIAMINE REQUIRING ...		Potri.003G015700 [exp]	5.29	0.8284	Pt-TH1.1
AT1G56190			Phosphoglycerate kinase family...		Potri.016G091800 [exp]	6.70	0.8062
AT3G10250			Plant protein 1589 of unknown ...		Potri.016G038100 [exp]	9.38	0.8074
AT3G15420			Transcription factor TFIIIC, t...		Potri.011G121800 [exp]	11.18	0.7687
AT1G69010	bHLH	bHLH102, BIM2	BES1-interacting Myc-like prot...		Potri.004G112900 [exp]	11.48	0.7699
AT4G29540		AtLpxA	bacterial transferase hexapept...		Potri.006G150200 [exp]	14.42	0.7784

Compare expression of checked genes

Potri.010G041200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.