Plant FIBer expression Database

Potri.010G041700 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G70480 385 / 1e-134 Domain of unknown function (DUF220) (.1), Domain of unknown function (DUF220) (.2)
AT1G23560 287 / 1e-95 Domain of unknown function (DUF220) (.1)
AT1G23520 175 / 9e-53 Domain of unknown function (DUF220) (.1), Domain of unknown function (DUF220) (.2)
AT1G23600 168 / 4e-50 Domain of unknown function DUF220 (.1.2)
AT1G23670 167 / 1e-49 Domain of unknown function (DUF220) (.1), Domain of unknown function (DUF220) (.2)
AT1G23690 164 / 2e-48 Domain of unknown function DUF220 (.1.2.3)
AT1G23660 159 / 8e-47 Domain of unknown function DUF220 (.1)
AT1G23580 159 / 1e-46 Domain of unknown function DUF220 (.1)
AT1G23640 157 / 2e-44 unknown protein
AT2G27670 141 / 2e-39 Domain of unknown function DUF220 (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10029147
[exp]
437 / 1e-154 AT1G70480 367 / 2e-127 Domain of unknown function (DUF220) (.1), Domain of unknown function (DUF220) (.2)
Lus10013018
[exp]
405 / 7e-142 AT1G70480 372 / 2e-129 Domain of unknown function (DUF220) (.1), Domain of unknown function (DUF220) (.2)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
PF02713 DUF220 Domain of unknown function DUF220
Representative CDS sequence
>Potri.010G041700.1 pacid=42798473 polypeptide=Potri.010G041700.1.p locus=Potri.010G041700 ID=Potri.010G041700.1.v4.1 annot-version=v4.1
ATGGGTGAAGCAGAAGTGAGAAGAGCTAGCATAGGAATTCCCAAGAGCAAGTGCAATGGAACCCACAAAGCTTTTGATCCATCATTTCTTGTGCAGCTCC
CAAACAAGCTTCAAGATTGTATTAAGTCACAACTCAAGAACTTATTAAAAGATGGCAAGGGCGAAAACTTGGTGAGAAAAGAGAAAGGATCATTTGCTTC
TACCGCTGCTCCTGCCTTGGGGATTGATTTGGAGAGGCAATTGCAAGCCTGGAGAGAAAATCCTGCTTGGACTGATCAACCTCCACAAATAAAGGTCAGT
GTACCAAGAGGTTCTCTCTGCAACCTCAATGCCAAAGTGGATATCGGGTTGCCCCCGGATGCAGTGTATGATATTGTGACTGACCCAGATAATAGGAGAG
TTTTCAAAAATATCAAGGAAGTGCTATCCAGGAGAGTTTTGCTTGATGAAGGTCACAGGCAGGTGGTTGATGTAGAGCAAGCTGCTATTTGGAAATTTCT
TTGGTGGTCAGGGACTATATCAGTTCATGTTTTGGTTGATCAGAACAGACAAGATCACTCAATGAACTTCAAGCAAGTGAAAACTGGGTTCATGAAAAGA
TTCGAAGGTTGCTGGAAAGTGGAACCTATATTTGTTGATGAAGCAATCTGCTATCCATTTAAACCTAAAACATTGGCGGACTATTGTTCATGTACAAGGG
GGAAAGGAAGGATAGGGTCGAAGGTGAGCTTGGAGCAGTTAATCCAACCAGCAATTGTTCCACCGCCACCAATTTCCTGGTACCTAAGAGGAATCACCAC
CAGGACTACTGAAATGATTGTAAATGATCTGGTCGCAGAAGCAGGCAGAATCAGGGTAGGTTTTGATGCTGAAAAATGTGAAGATTGGAGCTTGTATGAT
GAAAAACAACCTAACAAGTCATCTAATATTAAAGAAAGATGGGCTCTACATAGAAGAAATGCAAAGAAGCGTCCTAGAAAATTGTTGACTGCTAAAAGAT
CATCTTTTGGTTCAAGTAACAGTTAA
AA sequence
>Potri.010G041700.1 pacid=42798473 polypeptide=Potri.010G041700.1.p locus=Potri.010G041700 ID=Potri.010G041700.1.v4.1 annot-version=v4.1
MGEAEVRRASIGIPKSKCNGTHKAFDPSFLVQLPNKLQDCIKSQLKNLLKDGKGENLVRKEKGSFASTAAPALGIDLERQLQAWRENPAWTDQPPQIKVS
VPRGSLCNLNAKVDIGLPPDAVYDIVTDPDNRRVFKNIKEVLSRRVLLDEGHRQVVDVEQAAIWKFLWWSGTISVHVLVDQNRQDHSMNFKQVKTGFMKR
FEGCWKVEPIFVDEAICYPFKPKTLADYCSCTRGKGRIGSKVSLEQLIQPAIVPPPPISWYLRGITTRTTEMIVNDLVAEAGRIRVGFDAEKCEDWSLYD
EKQPNKSSNIKERWALHRRNAKKRPRKLLTAKRSSFGSSNS

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT1G70480 Domain of unknown function (DU... Potri.010G041700
[exp]
0 1
AT3G01400 ARM repeat superfamily protein... Potri.002G118800
[exp]
10.81 0.7412
Potri.016G089400
[exp]
15.74 0.7255
AT4G30935 WRKY ATWRKY32, WRKY3... WRKY DNA-binding protein 32 (.... Potri.006G264000
[exp]
18.49 0.6908
AT3G12570 FYD FYD (.1.2.3.4) Potri.010G206400
[exp]
23.43 0.7097
AT2G23450 Protein kinase superfamily pro... Potri.005G130900
[exp]
33.34 0.7050
AT3G57360 unknown protein Potri.017G142200
[exp]
37.30 0.6919
AT5G58380 PKS2, CIPK10, S... SNF1-RELATED PROTEIN KINASE 3.... Potri.016G133500
[exp]
40.47 0.6924
AT3G61610 Galactose mutarotase-like supe... Potri.001G095300
[exp]
41.13 0.6755
AT2G01430 HD ATHB17, ATHB-17 ARABIDOPSIS THALIANA HOMEOBOX-... Potri.008G129500
[exp]
43.30 0.6640
AT5G57700 BNR/Asp-box repeat family prot... Potri.018G097100
[exp]
43.95 0.6389

Potri.010G041700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.