Plant FIBer expression Database

Potri.010G041800 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT4G32180 518 / 5e-179 ATPANK2 pantothenate kinase 2 (.1.2.3)
AT1G60440 499 / 2e-177 ATCOAA, ATPANK1 pantothenate kinase 1 (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.008G189500
[exp]
692 / 0 AT4G32180 504 / 7e-174 pantothenate kinase 2 (.1.2.3)
Potri.015G077300
[exp]
550 / 0 AT4G32180 1469 / 0.0 pantothenate kinase 2 (.1.2.3)
Potri.012G081600
[exp]
541 / 0 AT4G32180 1486 / 0.0 pantothenate kinase 2 (.1.2.3)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10029146
[exp]
568 / 0 AT4G32180 500 / 7e-172 pantothenate kinase 2 (.1.2.3)
Lus10013019
[exp]
563 / 0 AT4G32180 503 / 3e-173 pantothenate kinase 2 (.1.2.3)
Lus10009520
[exp]
539 / 0 AT4G32180 1510 / 0.0 pantothenate kinase 2 (.1.2.3)
Lus10020341
[exp]
531 / 0 AT4G32180 1348 / 0.0 pantothenate kinase 2 (.1.2.3)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0108 Actin_ATPase PF03630 Fumble Fumble
Representative CDS sequence
>Potri.010G041800.1 pacid=42797261 polypeptide=Potri.010G041800.1.p locus=Potri.010G041800 ID=Potri.010G041800.1.v4.1 annot-version=v4.1
ATGGATCGTCTCAGAGAGATTGAAACTGATGGGAATTCAAATCCAATTCAAATATCTCGTTTGGCCCTCGATATTGGAGGGTCTTTAATCAAATTGGTAT
ATTTCTCGAGAGATTCTGGTGATCATGAGGACCCATTGAATGATAGTGTTCGGATTTCCAATGGTGTTAATGGAAGGCTTCATTTTGCCAAGTTTGAGAC
GACCAATATCAATGATTGCTTGCAGTTTATTAGTGCCAACAAACTTTTCTTTGGTGGTTTCCAGCATCAAGAAAACCCTACCAATGACAGGAGCTTTATT
AAGGCCACAGGTGGTGGGGCATACAAGTTCTCTGATCTTTTCAAAGAAAAGCTTGGCATTAGTCTCGAAAAGGAAGATGAAATGGATTGTCTTGTGACGG
GAGCAAATTTTTTGCTTAAGGCAGTCAATCATGAAGCTTTTACATACTTGAATGGTCAGAAGGAATTTGTGCAGATTGACCATAATGATTTGTATCCATA
TCTACTCGTTAATATTGGATCTGGAGTTAGCATGATCAAGGTGGATGGAGATGGAAAGTTTGAGCGAGTCAGTGGAACAAGTGTTGGTGGTGGCACTTTT
TGGGGTTTGGGAAAGTTACTAACAAAATGCCAGAGTTTTGATGAGTTGCTGGAGTTAAGTCAACGGGGAAATAACAGAGTTCTAGACATGCTTGTTGGGG
ATATCTATGGTGGGATGGAATATTCAAAGATTGGTCTCTCATCTACAGCCATTGCTTCCAGCTTTGGGAGGGCAATTTCTAACAGTAATGAACTTCATGA
TTATAAACCTGAAGATGTCTCACGGTCTCTTCTAAGAATGATTTCAAATAATATTGGACAGATCTCTTACTTGAATGCACTTCGATTTGGGCTCAAGCGC
ATATTTTTTGGAGGATTTTTCACCCGGGGTCATTCTTATACTATGGACACCATTTCCGTTGCAGTTCATTTCTGGTCTAAAGGTGAGGCAAAAGCAATGT
TTTTGCGGCATGAAGGATTTCTTGGAGCTCTAGGTGCATTCATGAGCTATGAACGGCACAGCCTCGGTGACTTGATGGTTAATCAATCAGTGCAGATCCC
AGTGGATGCATCCTCTAGTACAGATACAAATTATAATCCACTAGAGCGGGATTTGAATGAGACTGAGAGCATGCAGTGTAGTGTCTATCAAGCTTAG
AA sequence
>Potri.010G041800.1 pacid=42797261 polypeptide=Potri.010G041800.1.p locus=Potri.010G041800 ID=Potri.010G041800.1.v4.1 annot-version=v4.1
MDRLREIETDGNSNPIQISRLALDIGGSLIKLVYFSRDSGDHEDPLNDSVRISNGVNGRLHFAKFETTNINDCLQFISANKLFFGGFQHQENPTNDRSFI
KATGGGAYKFSDLFKEKLGISLEKEDEMDCLVTGANFLLKAVNHEAFTYLNGQKEFVQIDHNDLYPYLLVNIGSGVSMIKVDGDGKFERVSGTSVGGGTF
WGLGKLLTKCQSFDELLELSQRGNNRVLDMLVGDIYGGMEYSKIGLSSTAIASSFGRAISNSNELHDYKPEDVSRSLLRMISNNIGQISYLNALRFGLKR
IFFGGFFTRGHSYTMDTISVAVHFWSKGEAKAMFLRHEGFLGALGAFMSYERHSLGDLMVNQSVQIPVDASSSTDTNYNPLERDLNETESMQCSVYQA

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT4G32180 ATPANK2 pantothenate kinase 2 (.1.2.3) Potri.010G041800
[exp]
0 1
AT1G76490 HMGR1, HMG1, At... 3-HYDROXY-3-METHYLGLUTARYL COA... Potri.004G208500
[exp]
1.00 0.9620 HMGR3.4
AT3G61850 DOF DAG1, AtDof3,7 dof affecting germination 1, D... Potri.014G100900
[exp]
1.41 0.9587 DAG1.2
AT2G32300 UCC1 uclacyanin 1 (.1) Potri.018G129200
[exp]
2.44 0.9572
AT2G41180 SIB2 sigma factor binding protein 2... Potri.019G013300
[exp]
2.82 0.9486
AT1G30760 FAD-binding Berberine family p... Potri.011G161100
[exp]
5.91 0.9480
AT2G47485 unknown protein Potri.004G095150
[exp]
8.12 0.9415
AT1G59870 ATABCG36, ABCG3... PENETRATION 3, ARABIDOPSIS PLE... Potri.001G189500
[exp]
8.48 0.9095
AT2G47485 unknown protein Potri.004G095200
[exp]
9.16 0.9410
AT4G20970 bHLH bHLH162 basic helix-loop-helix (bHLH) ... Potri.013G129800
[exp]
11.48 0.9313
AT5G13220 ZIM JAS1, TIFY9, JA... TIFY DOMAIN PROTEIN 9, JASMONA... Potri.003G165000
[exp]
11.66 0.9407

Potri.010G041800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.