Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G60460 362 / 1e-120 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036440 [exp] 288 / 3e-93 AT1G60460 267 / 2e-85 unknown protein Lus10041115 [exp] 285 / 7e-92 AT1G60460 261 / 5e-83 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.010G041900.3 pacid=42799687 polypeptide=Potri.010G041900.3.p locus=Potri.010G041900 ID=Potri.010G041900.3.v4.1 annot-version=v4.1 ATGGAAATTTCTTCCACTTCGAATCTTTGCTTACACTTAATTTCTTGTGCATTTCAAAGATGCCGTCTATCTCAACAACTCTGCCGGCTCTCTGCTGTTC TCAAATCACCATCTCCTTCCATCCTTCAAATTTCCAGGCTGCGATTAAAATCTTCAATGCAGTTTCTGATACTGGAATCGGTAGCTGCTTGGAAGAATTC CAGGATCTTAACTGCAGCAGCATTATTTCTGCTGAATTTTGGGATGGAATTCTCTCTGTCAAAACTACTGACGGCAGCAATTTGTGATGATGAGATATAT CATTATCACTTCAATTTAAGGGAAAACATTTCCAGCAGCAGAACCCTTACCCGTCTACCTTCGAATCCTAAGAACGGTCTGAAATTCAGTGGGACTCAAA TATGTCTGTCCATTTCAGAGAGCATTGATGTTTTAGTTTCTGAGATCAATCACTTCTTTCAAAAGATGATGATCTTGAATATCCCAAATATTGCAATTGA ACTGTTGATTGAACGTGAAGATATTCCTGGATCAAGATGTGAAAATGTCTTTCTAGCAAATAGAAGCAATCCTGGACCTCTTTCAACCTCAAATGTTGAA TTTCTAAAGTCAGGCCTTGAAGATTATGTTTTAAAGCATGGGAATTCTCTAACCCAAAAGTGCAGTACATGCTTTGCAACTTCTGAGTGTCTTAAGGTTG GGAGTGGAATAGCATGCAGCACAGAAAGCCATAAGAGTTCTGGACTCATGATGGAAGTGGTGATTATAATAAGTGAGATAGAGTCAACCTGTCCTTGCTT CAGGGAATGCAGTTCTAAAACAGAGGTATTGTATTTCAAGGATTTCACACCCTGTTCAATTTCCCATTCAACGCTGAATGTATTGTCTACCATTGACTGG AAAAGTTATGGACTGACTCTGGAGAACGTTGTGGATCAAGGTGTCTGTGTACTAGAGTGGGAAGACTCACCATCTCATTCTCAAATTGATATGGTCCTCC ACTGCTACCATAAGCAATATCCAATGCATAAAACTCAACTTGAACGGCATCTCATAAAAAAAGCAGTTAAAGCTGCATTGAATAATTTGAAGGAGAAACA TCCAGGAATTCTTCTAAGTGCACATGCCCTCAAGATTTGCAGTCATGCCCCTGACCTTGCAAGATCTATTGCTGGCCTCATCTTGTCATCTAATGATCCA GACTTTCAAGGAGAATGCTTCTCTCTACTTGGTTTGCAGTCAAGAGAAATTGGAGCGGATGTTGTTGAAGATTGTATCCAGGAGAAGATCGTTTCAGTTA TAGAGATGAATGACAGGAAGTCCAGGCAACGCAAAGTGGTGGCGCCTTTTCTTTTTGAAGACGACTGCGACCAGGATTCGAACTATCAAGACAAAGAATA CGAAGAAGGTGAGGATGAATTTAGTTACGTGGATTAG
AA sequence Show only first row Show all	>Potri.010G041900.3 pacid=42799687 polypeptide=Potri.010G041900.3.p locus=Potri.010G041900 ID=Potri.010G041900.3.v4.1 annot-version=v4.1 MEISSTSNLCLHLISCAFQRCRLSQQLCRLSAVLKSPSPSILQISRLRLKSSMQFLILESVAAWKNSRILTAAALFLLNFGMEFSLSKLLTAAICDDEIY HYHFNLRENISSSRTLTRLPSNPKNGLKFSGTQICLSISESIDVLVSEINHFFQKMMILNIPNIAIELLIEREDIPGSRCENVFLANRSNPGPLSTSNVE FLKSGLEDYVLKHGNSLTQKCSTCFATSECLKVGSGIACSTESHKSSGLMMEVVIIISEIESTCPCFRECSSKTEVLYFKDFTPCSISHSTLNVLSTIDW KSYGLTLENVVDQGVCVLEWEDSPSHSQIDMVLHCYHKQYPMHKTQLERHLIKKAVKAALNNLKEKHPGILLSAHALKICSHAPDLARSIAGLILSSNDP DFQGECFSLLGLQSREIGADVVEDCIQEKIVSVIEMNDRKSRQRKVVAPFLFEDDCDQDSNYQDKEYEEGEDEFSYVD

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G60460			unknown protein		Potri.010G041900 [exp]	0	1
AT5G05970		NEDD1	NEURAL PRECURSOR CELL EXPRESSE...		Potri.010G197700 [exp]	1.00	0.9475
AT3G11470			4'-phosphopantetheinyl transfe...		Potri.016G078400 [exp]	1.41	0.9267
AT1G22970			unknown protein		Potri.010G117100 [exp]	3.46	0.9245
AT5G46850			unknown protein		Potri.003G095200 [exp]	3.46	0.9168
AT4G34260		AXY8, FUC95A	ALTERED XYLOGLUCAN 8, 1,2-alph...		Potri.001G298900 [exp]	6.55	0.8779
AT2G26650		AKT1, ATAKT1	K+ transporter 1, K+ transport...		Potri.006G154600 [exp]	9.79	0.8920	AKT1.1
AT2G34560			P-loop containing nucleoside t...		Potri.004G065100 [exp]	10.39	0.9113
AT3G54230		SUA	suppressor of abi3-5 (.1.2)		Potri.017G138401 [exp]	13.78	0.9152
AT5G45600		TAF14b, GAS41	TBP-ASSOCIATED FACTOR 14B, GLI...		Potri.004G164500 [exp]	15.29	0.8852	GAS41.1
AT2G32580			Protein of unknown function (D...		Potri.004G006500 [exp]	16.15	0.9014

Compare expression of checked genes

Potri.010G041900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.