Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G60470 533 / 0 ATGOLS4 galactinol synthase 4 (.1) AT2G47180 498 / 2e-178 ATGOLS1 galactinol synthase 1 (.1) AT1G60450 471 / 4e-168 ATGOLS7 galactinol synthase 7 (.1) AT1G56600 469 / 3e-167 ATGOLS2 galactinol synthase 2 (.1) AT1G09350 463 / 6e-165 ATGOLS3 galactinol synthase 3 (.1) AT4G26250 443 / 5e-157 ATGOLS6 galactinol synthase 6 (.1) AT5G23790 425 / 7e-150 ATGOLS5 galactinol synthase 5 (.1) AT5G30500 413 / 2e-145 GolS10 galactinol synthase 10, Nucleotide-diphospho-sugar transferases superfamily protein (.1) AT1G77130 78 / 1e-15 PGSIP2, GUX3 glucuronic acid substitution of xylan 3, plant glycogenin-like starch initiation protein 2 (.1) AT1G54940 77 / 2e-15 PGSIP4 plant glycogenin-like starch initiation protein 4 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G189400 [exp] 613 / 0 AT1G60470 545 / 0.0 galactinol synthase 4 (.1) Potri.014G116800 [exp] 490 / 1e-175 AT2G47180 568 / 0.0 galactinol synthase 1 (.1) Potri.002G191600 [exp] 482 / 2e-172 AT2G47180 565 / 0.0 galactinol synthase 1 (.1) Potri.010G150400 [exp] 480 / 9e-172 AT2G47180 519 / 0.0 galactinol synthase 1 (.1) Potri.005G006800 [exp] 471 / 4e-168 AT1G56600 539 / 0.0 galactinol synthase 2 (.1) Potri.013G005800 [exp] 468 / 4e-167 AT1G56600 543 / 0.0 galactinol synthase 2 (.1) Potri.008G101000 [exp] 468 / 5e-167 AT2G47180 507 / 0.0 galactinol synthase 1 (.1) Potri.013G005900 [exp] 334 / 1e-115 AT1G56600 363 / 2e-127 galactinol synthase 2 (.1) Potri.005G033500 [exp] 82 / 4e-17 AT1G08990 555 / 0.0 plant glycogenin-like starch initiation protein 5 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029145 [exp] 484 / 8e-173 AT2G47180 493 / 1e-176 galactinol synthase 1 (.1) Lus10031434 [exp] 462 / 1e-164 AT2G47180 543 / 0.0 galactinol synthase 1 (.1) Lus10010897 [exp] 461 / 1e-163 AT2G47180 533 / 0.0 galactinol synthase 1 (.1) Lus10013020 [exp] 329 / 1e-111 AT2G47180 336 / 3e-114 galactinol synthase 1 (.1) Lus10042658 [exp] 86 / 4e-18 AT4G33330 801 / 0.0 glucuronic acid substitution of xylan 2, plant glycogenin-like starch initiation protein 3 (.1.2) Lus10021731 [exp] 86 / 5e-18 AT4G33330 803 / 0.0 glucuronic acid substitution of xylan 2, plant glycogenin-like starch initiation protein 3 (.1.2) Lus10029932 [exp] 80 / 2e-16 AT1G54940 527 / 0.0 plant glycogenin-like starch initiation protein 4 (.1) Lus10018922 [exp] 79 / 8e-16 AT1G77130 847 / 0.0 glucuronic acid substitution of xylan 3, plant glycogenin-like starch initiation protein 2 (.1) Lus10028623 [exp] 78 / 1e-15 AT1G77130 830 / 0.0 glucuronic acid substitution of xylan 3, plant glycogenin-like starch initiation protein 2 (.1) Lus10031507 [exp] 78 / 2e-15 AT1G54940 542 / 0.0 plant glycogenin-like starch initiation protein 4 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0110 [poplar] [flax] GT-A PF01501 [poplar] [flax] Glyco_transf_8 Glycosyl transferase family 8
Representative CDS sequence Show only first row Show all	>Potri.010G042000.1 pacid=42800270 polypeptide=Potri.010G042000.1.p locus=Potri.010G042000 ID=Potri.010G042000.1.v4.1 annot-version=v4.1 ATGGCTCCAGGAGTGCCCATGGATGTGATTTCCTGCACCGGCAAGGTTTCCACGGCTAGCACTGGCTACTCTAAAAGGGCCTTTGTAACATTTTTAGCCG GAAATGGGGATTATGTTAAAGGGGTAGTTGGGTTGGCGAAGGGTTTGCGCAAGGTGAAGAGTGCATACCCTCTGGTGGTAGCAATGTTGCCAGATGTGCC TGAGGAACACCGTGACATTTTGAGGTCTCAAGGTTGCATTGTTCGTGAGATTGAGCCTATTTATCCACCTGAGAACCAGATTCAGTTTGCCATGGCCTAC TACGTGATCAACTACTCCAAGCTCCGCATTTGGAATTTCGAGGAGTACAGCAAGATGATGTATTTGGATGCTGATATCCAAGTGTTCGAAAATATAGACC ATCTATTTGACACCCAAGATGGCTACTTCTATGCCGTGATGGACTGCTTCTGTGAGAAAACCTGGAGCCACTCACCACAACACTCTATCGGTTACTGCCA GCAGTGCCCGGAAAAGGTGACATGGCCTGCTGAGATGGGCTCTCCTCCTCCCTTGTACTTCAATGCTGGGATGTTTGTCTTTGAGCCTAGTCGTTTGACT TATGAGAGCCTTCTTGAAACTCTCCAGATTACCCCACCAACCCCATTTGCCGAGCAAGATTTCTTAAATATGTTTTTCCAAAAAACATACAAGCCGATCC CTCTAATGTACAACCTGGTTTTAGCCATGTTATGGCGACATCCTGAGAATGTGGAGGTCGAAAAGGTTAAAGTGGTTCACTACTGTGCTGCTGGTTCAAA ACCTTGGAGATATACTGGCAAGGAAGCTAACATGGACAGAGAGGACATCAAGATGCTAGTGGCAAGATGGTGGGACATATATAATAACGAGTCCCTCGAT TTCAAGGCTGAGAACTCAGTTCCAGAAGAAGAAACATTGTCGAGGTCATCCATCTTGTCTTCCAAGCCTGAGCCTGCCATTTCCTACATCTCTGCGCCAT CTGCTGCTTAA
AA sequence Show only first row Show all	>Potri.010G042000.1 pacid=42800270 polypeptide=Potri.010G042000.1.p locus=Potri.010G042000 ID=Potri.010G042000.1.v4.1 annot-version=v4.1 MAPGVPMDVISCTGKVSTASTGYSKRAFVTFLAGNGDYVKGVVGLAKGLRKVKSAYPLVVAMLPDVPEEHRDILRSQGCIVREIEPIYPPENQIQFAMAY YVINYSKLRIWNFEEYSKMMYLDADIQVFENIDHLFDTQDGYFYAVMDCFCEKTWSHSPQHSIGYCQQCPEKVTWPAEMGSPPPLYFNAGMFVFEPSRLT YESLLETLQITPPTPFAEQDFLNMFFQKTYKPIPLMYNLVLAMLWRHPENVEVEKVKVVHYCAAGSKPWRYTGKEANMDREDIKMLVARWWDIYNNESLD FKAENSVPEEETLSRSSILSSKPEPAISYISAPSAA

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G60470		ATGOLS4	galactinol synthase 4 (.1)		Potri.010G042000 [exp]	0	1
AT4G10120		ATSPS4F	Sucrose-phosphate synthase fam...		Potri.013G095500 [exp]	1.41	0.9747
AT1G07010		AtSLP1	Shewenella-like protein phosph...		Potri.009G077900 [exp]	2.44	0.9710
AT4G03230			S-locus lectin protein kinase ...		Potri.019G119750 [exp]	2.44	0.9692
AT4G03230			S-locus lectin protein kinase ...		Potri.019G119700 [exp]	4.47	0.9625
AT5G19875			unknown protein		Potri.001G231300 [exp]	4.89	0.9670
AT1G34300			lectin protein kinase family p...		Potri.013G115800 [exp]	6.32	0.9555
AT4G34740		CIA1, ATASE2, A...	CHLOROPLAST IMPORT APPARATUS 1...		Potri.009G125600 [exp]	7.74	0.9600
AT1G22160			Protein of unknown function (D...		Potri.002G092900 [exp]	7.93	0.9564
AT3G46750			unknown protein		Potri.001G243900 [exp]	8.83	0.9521
AT4G17090		CT-BMY, BMY8, B...	BETA-AMYLASE 8, BETA-AMYLASE 3...		Potri.003G085500 [exp]	11.00	0.9553	Pt-BMY.2

Compare expression of checked genes

Potri.010G042000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.