Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G10660 372 / 2e-129 unknown protein AT5G62960 342 / 3e-117 unknown protein AT3G27770 265 / 2e-87 unknown protein AT2G47115 200 / 3e-62 unknown protein AT1G70505 0 / 1 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G078200 [exp] 380 / 3e-132 AT5G62960 382 / 8e-133 unknown protein Potri.012G082400 [exp] 377 / 3e-131 AT5G62960 387 / 1e-134 unknown protein Potri.001G347400 [exp] 338 / 7e-116 AT3G27770 314 / 9e-107 unknown protein Potri.014G115200 [exp] 254 / 1e-82 AT2G47115 340 / 4e-117 unknown protein Potri.002G190200 [exp] 244 / 1e-78 AT2G47115 344 / 1e-118 unknown protein
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029133 [exp] 408 / 2e-142 AT1G10660 338 / 5e-115 unknown protein Lus10027692 [exp] 348 / 6e-120 AT5G62960 355 / 2e-122 unknown protein Lus10042109 [exp] 341 / 7e-117 AT5G62960 397 / 1e-138 unknown protein Lus10032130 [exp] 321 / 6e-109 AT5G62960 303 / 2e-101 unknown protein Lus10014556 [exp] 310 / 1e-104 AT5G62960 305 / 3e-102 unknown protein Lus10030594 [exp] 295 / 1e-99 AT1G70505 261 / 6e-86 unknown protein Lus10030895 [exp] 291 / 5e-98 AT1G70505 256 / 6e-84 unknown protein Lus10013029 [exp] 277 / 3e-87 AT1G23400 658 / 0.0 ARABIDOPSIS THALIANA HOMOLOG OF MAIZE CAF2, RNA-binding CRS1 / YhbY (CRM) domain-containing protein (.1) Lus10002386 [exp] 257 / 1e-84 AT5G62960 320 / 5e-109 unknown protein Lus10038056 [exp] 249 / 3e-81 AT1G10660 252 / 1e-82 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.010G042600.1 pacid=42798433 polypeptide=Potri.010G042600.1.p locus=Potri.010G042600 ID=Potri.010G042600.1.v4.1 annot-version=v4.1 ATGACTGCTGATACAACCTTACCGGGTTACTGGTTGAACTGGAGATTCTTCCTATGCGCTCTCTTTATTTTAATATCTATGGTTTTAGCAGCAATTCTAA TATGGAAAAATGAAGGGTCTAAGGAATCGGAGAGGAGAGAAAATCAGCAAGAAAGACCAGGGTTTCTGTACAAAGATGAAGCTTGGAATACTTGTGTGAA AACAATCCATCCGGCTTGGCTGCTTGCGTTTAGGATTATCGCCTTTTTTGTTCTTTTATCATTGATCACAGCAAATGTGGTAACTGATGGAGGGGGCATT TTTTACTTTTATACTCAGTGGACATTTTCTTTGGTGACAATCTATTTTGCGATGGGATCTTCGGTTTCCATTTATGGGTGCTGCTACTATCGCCGTGTAT TGGGTGGTGATCGGGTGAATCATGAGACTTTAGATGCAGAACGAGGCACTTACATAGCTCCAACACCTGGAGAAGAAATTGTGAATATATCCAACTCAGA CAAAAGTTTAGATACCAGCCAAGAACCTCGCACTCGCCAAATTGCAAGTTCGTGGGGCTATGTTTTTCAAATTGCTTTTCAGATGTGTGCAGGTGCTGTT GTGCTCACTGATTGTGTGTTCTGGTTCATTATTTATCCATTTCTATCAGCCAAAGATTTCAGTCTTGATTTTCTGAATGTTTGCATGCACTCAGTCAATG CTTTTTTTCTCCTCGGTGACACAGTCTTGAATTGCATGCGGTTCCCCATGTTTCGGATCGCATATTTTGTTTTATGGACATCCATATTTGTCGTTTCTCA GTGGATCATCCATGCTTGTGTTTCAATGTGGTGGCCGTACCCCTTTCTTGATTTGTCATCGCCATATGCCCCCGTATGGTACATGGCCGTGGGGTTGATG CATGTTCCATGCTACGGCATCTTTGCTTTGATAATTAAGCTGAAGCACATTTGGCTGTCAAGATCATTTCCAGATTCCTATCAAGGTTTGAAGTGA
AA sequence Show only first row Show all	>Potri.010G042600.1 pacid=42798433 polypeptide=Potri.010G042600.1.p locus=Potri.010G042600 ID=Potri.010G042600.1.v4.1 annot-version=v4.1 MTADTTLPGYWLNWRFFLCALFILISMVLAAILIWKNEGSKESERRENQQERPGFLYKDEAWNTCVKTIHPAWLLAFRIIAFFVLLSLITANVVTDGGGI FYFYTQWTFSLVTIYFAMGSSVSIYGCCYYRRVLGGDRVNHETLDAERGTYIAPTPGEEIVNISNSDKSLDTSQEPRTRQIASSWGYVFQIAFQMCAGAV VLTDCVFWFIIYPFLSAKDFSLDFLNVCMHSVNAFFLLGDTVLNCMRFPMFRIAYFVLWTSIFVVSQWIIHACVSMWWPYPFLDLSSPYAPVWYMAVGLM HVPCYGIFALIIKLKHIWLSRSFPDSYQGLK

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G10660			unknown protein		Potri.010G042600 [exp]	0	1
AT1G67600			Acid phosphatase/vanadium-depe...		Potri.010G056600 [exp]	3.00	0.7936
AT3G26922			F-box/RNI-like superfamily pro...		Potri.011G104100 [exp]	3.16	0.8022
AT4G35140			Transducin/WD40 repeat-like su...		Potri.009G139000 [exp]	6.00	0.7264
AT1G55170			unknown protein		Potri.003G037900 [exp]	8.06	0.7617
AT3G56830			Protein of unknown function (D...		Potri.002G146000 [exp]	8.71	0.7939
AT2G35900			unknown protein		Potri.016G066800 [exp]	12.48	0.7188
AT5G08290		YLS8	YELLOW-LEAF-SPECIFIC GENE 8, m...		Potri.007G072700 [exp]	16.73	0.7293
AT4G24290			MAC/Perforin domain-containing...		Potri.003G006500 [exp]	18.33	0.7570
AT5G01650			Tautomerase/MIF superfamily pr...		Potri.016G126700 [exp]	23.66	0.7223
AT3G12040			DNA-3-methyladenine glycosylas...		Potri.016G060000 [exp]	26.45	0.7633

Compare expression of checked genes

Potri.010G042600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.