Plant FIBer expression Database

Potri.010G042700 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G10670 716 / 0 ACLA-1 ATP-citrate lyase A-1 (.1.2.3.4)
AT1G60810 710 / 0 ACLA-2 ATP-citrate lyase A-2 (.1)
AT1G09430 679 / 0 ACLA-3 ATP-citrate lyase A-3 (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.008G188900
[exp]
770 / 0 AT1G60810 725 / 0.0 ATP-citrate lyase A-2 (.1)
Potri.013G004400
[exp]
696 / 0 AT1G09430 790 / 0.0 ATP-citrate lyase A-3 (.1)
Potri.005G004900
[exp]
694 / 0 AT1G09430 795 / 0.0 ATP-citrate lyase A-3 (.1)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10013032
[exp]
729 / 0 AT1G60810 766 / 0.0 ATP-citrate lyase A-2 (.1)
Lus10030897
[exp]
715 / 0 AT1G60810 761 / 0.0 ATP-citrate lyase A-2 (.1)
Lus10030592
[exp]
666 / 0 AT1G60810 709 / 0.0 ATP-citrate lyase A-2 (.1)
Lus10029129
[exp]
564 / 0 AT1G60810 627 / 0.0 ATP-citrate lyase A-2 (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0179 ATP-grasp PF08442 ATP-grasp_2 ATP-grasp domain
CL0506 Succ_CoA_synth PF16114 Citrate_bind ATP citrate lyase citrate-binding
Representative CDS sequence
>Potri.010G042700.1 pacid=42799238 polypeptide=Potri.010G042700.1.p locus=Potri.010G042700 ID=Potri.010G042700.1.v4.1 annot-version=v4.1
ATGGCACGCAAGAAGATCAGAGAGTACGACTCCAAGAGATTGTTGAGGGAGCATTTCAAGAGGTTTTCTGGTCGTGATTTGCCCATCAAATCTGCTCAAG
TAACGGAATCGACTGATTTCAATGAGCTAGCAGAGAAGGAACCCTGGTTGGCATCGGCAAAACTGGTTGTCAAACCTGACATGCTGTTTGGGAAACGTGG
GAAGAGTGGCCTTGTTGCTTTGGATCTGGATCTGGATCAAGTTGCTGAGTTTATCCAAGGGCGTCTTGGCAAAGAGGTTGAAATGGGTGGATGCAAAGGA
CCTATAACAACATTCATCATTGAGCCCTTTATCCCCCACAACCAAGAGTTCTATCTAAACATTGTCTCGGAGAGACTTGGGTGCAGCATCAGCTTTTCGG
AATGCGGAGGGATTGAAATTGAAGAGAACTGGGATAAGGTCAAGACTATATTTGTTCCAACAAGAGCAACGTTTACGTCGGGAGATTGTGCTCTACTTGT
TGCCACCCTTCCTTCAGCGATAAAAGGAGAAATTGAGGAGTTCATTCAAGTAGTTTTTGCTCTTTTTCAAGATCTTGACTTCACTTTCCTGGAGATGAAC
CCTTTCACTTTTGTTGATGGAAAGCCGTATCCGTTGGATATGAGAGGCGAGCTGGACGACACTGCAGCTTTTAAAAACTTCAAAAAATGGGGTAGCATTG
AATTTCCAATGCCATTTGGAAGAGTTATGAGCCCTTCAGAAAGCTTTGTTCATGGCCTAGATGAAAAGACAAGTGCTTCTTTGAAATTCACGGTATTGAA
TCCAAAGGGGCGAATTTGGACTATGGTGGCTGGAGGAGGTGCAAGTGTCATCTATGCTGATACGGTAGGAGATCTTGGCTATGCTACCGAGCTTGGGAAC
TATGCAGAGTATAGTGGAGCTCCCAATAAAGAGGAGGTCTTGCGGTATGCCAGAGTTGTAATTGATTGTGCGACTGCTGATCCTGATGGCCATAAGAGAG
CCCTTGTAATTGGTGGAGGAATTGCAAACTTTACTGATGTTGCTGCTACATTTAATGGCATAATTCGAACCCTGAAGGAGAAGGAATCGAAGCTGAAAGC
AGCAAGGATGAGCATATATGTGAGGAGAGGAGGTCCTAATTACCAGACGGGCCTTGCAAAAATGAGGGCACTTGGAGAGGAGATTGGAATCCCAATTGAG
GTTTACGGGCCGGAGGCAACCATGACTGGCATATGCAAACAGGCAATCGAGTGCATCACCGCAGCTGCATAA
AA sequence
>Potri.010G042700.1 pacid=42799238 polypeptide=Potri.010G042700.1.p locus=Potri.010G042700 ID=Potri.010G042700.1.v4.1 annot-version=v4.1
MARKKIREYDSKRLLREHFKRFSGRDLPIKSAQVTESTDFNELAEKEPWLASAKLVVKPDMLFGKRGKSGLVALDLDLDQVAEFIQGRLGKEVEMGGCKG
PITTFIIEPFIPHNQEFYLNIVSERLGCSISFSECGGIEIEENWDKVKTIFVPTRATFTSGDCALLVATLPSAIKGEIEEFIQVVFALFQDLDFTFLEMN
PFTFVDGKPYPLDMRGELDDTAAFKNFKKWGSIEFPMPFGRVMSPSESFVHGLDEKTSASLKFTVLNPKGRIWTMVAGGGASVIYADTVGDLGYATELGN
YAEYSGAPNKEEVLRYARVVIDCATADPDGHKRALVIGGGIANFTDVAATFNGIIRTLKEKESKLKAARMSIYVRRGGPNYQTGLAKMRALGEEIGIPIE
VYGPEATMTGICKQAIECITAAA

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

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Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT1G10670 ACLA-1 ATP-citrate lyase A-1 (.1.2.3.... Potri.010G042700
[exp]
0 1
AT5G16340 AMP-dependent synthetase and l... Potri.019G068001
[exp]
1.00 0.9353
AT3G47800 Galactose mutarotase-like supe... Potri.017G080200
[exp]
2.00 0.9125
AT3G61220 SDR1 short-chain dehydrogenase/redu... Potri.014G080100
[exp]
7.74 0.8601
AT5G24090 ATCHIA chitinase A (.1) Potri.015G023900
[exp]
17.34 0.8826 CHI3.7
AT2G17500 Auxin efflux carrier family pr... Potri.005G099300
[exp]
22.20 0.8571
AT4G30380 EXLB2 Barwin-related endoglucanase (... Potri.018G098200
[exp]
74.56 0.8111
AT4G29330 DER1 DERLIN-1 (.1) Potri.004G233100
[exp]
226.98 0.8109

Potri.010G042700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.