Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G23390 247 / 2e-78 Kelch repeat-containing F-box family protein (.1) AT3G24760 82 / 5e-17 Galactose oxidase/kelch repeat superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013033 [exp] 253 / 2e-82 AT1G23390 226 / 1e-72 Kelch repeat-containing F-box family protein (.1) Lus10029127 [exp] 92 / 1e-21 AT1G23390 66 / 1e-12 Kelch repeat-containing F-box family protein (.1) Lus10025938 [exp] 75 / 2e-14 AT3G24760 381 / 2e-131 Galactose oxidase/kelch repeat superfamily protein (.1) Lus10029128 [exp] 0 / 1 AT1G23390 142 / 1e-42 Kelch repeat-containing F-box family protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.010G042900.1 pacid=42800038 polypeptide=Potri.010G042900.1.p locus=Potri.010G042900 ID=Potri.010G042900.1.v4.1 annot-version=v4.1 ATGGAGGTCACCGGGGATAATTTACTAACACCAGAAGATTCAAATCAAATCCATGGAGACATCTTGGAGTCAATATTCAATCACGTCCCTCTCGTAGATC TCGTTCCTGCCAGTTACGTGACCAAGTCCTGGAAACTTGCAGTTTCCACTTCTCTGCAGGGAGTTGGTGGTCGTCGTCGTCGTTGCCCCAACAGAATCAA ACCATGGCTCCTAATCTACACCCAGAACACGAGGTTTCCTCACTCAACAACAGCACACGCTTACGATCCACGTTCACACGTTTGGATCGAAATCCATGAG CCATCTATCAAGTTCATCTCAGCCCTCCGATCATCTCACTCCACTCTCCTCTACATGCTTTCACCTTCCAGCCTTTCTTTGTCTTATGACCCTCTCCACC TCACCTGGCACCACATCAAGGCCCCACTCATATGGAGAATCGACCCCATTGTGGCCATGGTTGGAAAACGTGTCATCATCGCCGGTGGAACCTGCGACTT CGAGGACGACCCTTTAGCAGTCGAAATGTATGACCTGGAGACTTGCAAGTGGGAAATGTGCGAGTCCATGCCTGCGATACTCAGGGAATCAGCTTCCTCC ACCTGGCTCTCCATTGCAGTGAACTCCAACAAAAACAAGATGTATGTCGTGGAGAAAAGCACGGGGGTGGCTTACTCCTTCGATCCCAGCATCAAGGCAT GGCAAGGACCCTACCATCTGCGCCCCCCTCAGACAACAAGTACTATCTCCCACTGCTTCATTGGATTTGCCAACCATGATCGTCTGATTTTTGTTGGTAT AATTGGAGATGATATCAAAAGCATAAAACTGTGGGAGGTGGATGGGGAGTCATTAGAGGTTTTCAGAGAGATTGGAGAGATGCCAAAGCAGCTGGTAGAG AGAATGAAGGTTGTTAGCAGTGAAGATGATGCTGAGAATACGATATACTTTGGTATGCCGACGCCATCCTCTATAGGTGTGAGTTTGATGGATGATCTTG TATACATATACATAAGCAGTGTTGGAGGGGCTATCATCATGTGTGAGCTTAGCGGAGATCACAGTGGCGCGTGTAGCTGGACCAGTGTGAAGAATATAAC AGGGATTGATATTGACAGATGTAAGTTAACCCAGGGAACAGTTTTGGGCTGTTCAAGGGTGGGTTTGGATGATCTGGATAAGGCTCTGCGTGAGAGTAGA AAATTTCATGTGAAAGAGACGGTTTGA
AA sequence Show only first row Show all	>Potri.010G042900.1 pacid=42800038 polypeptide=Potri.010G042900.1.p locus=Potri.010G042900 ID=Potri.010G042900.1.v4.1 annot-version=v4.1 MEVTGDNLLTPEDSNQIHGDILESIFNHVPLVDLVPASYVTKSWKLAVSTSLQGVGGRRRRCPNRIKPWLLIYTQNTRFPHSTTAHAYDPRSHVWIEIHE PSIKFISALRSSHSTLLYMLSPSSLSLSYDPLHLTWHHIKAPLIWRIDPIVAMVGKRVIIAGGTCDFEDDPLAVEMYDLETCKWEMCESMPAILRESASS TWLSIAVNSNKNKMYVVEKSTGVAYSFDPSIKAWQGPYHLRPPQTTSTISHCFIGFANHDRLIFVGIIGDDIKSIKLWEVDGESLEVFREIGEMPKQLVE RMKVVSSEDDAENTIYFGMPTPSSIGVSLMDDLVYIYISSVGGAIIMCELSGDHSGACSWTSVKNITGIDIDRCKLTQGTVLGCSRVGLDDLDKALRESR KFHVKETV

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G23390			Kelch repeat-containing F-box ...		Potri.010G042900 [exp]	0	1
AT4G27450			Aluminium induced protein with...		Potri.004G040600 [exp]	5.74	0.7488
AT1G09240		ATNAS3	ARABIDOPSIS THALIANA NICOTIANA...		Potri.010G143100 [exp]	10.00	0.7637
					Potri.011G053612 [exp]	16.61	0.7612
AT2G33150		PED1, KAT2, PKT...	PEROXISOME DEFECTIVE 1, 3-KETO...		Potri.001G051800 [exp]	19.39	0.7567
AT1G44170		ALDH4, ALDH3H1	aldehyde dehydrogenase 4, alde...		Potri.002G081800 [exp]	20.34	0.6870	Pt-ALDH3.1
AT4G01810			Sec23/Sec24 protein transport ...		Potri.014G112600 [exp]	23.66	0.7330
AT4G14500			Polyketide cyclase/dehydrase a...		Potri.008G162600 [exp]	24.97	0.6402
AT5G58290		RPT3	regulatory particle triple-A A...		Potri.006G029100 [exp]	30.75	0.7315
AT5G49650		XK2, XK-2	XYLULOSE KINASE 2, xylulose ki...		Potri.019G077600 [exp]	32.58	0.6688
AT1G14685	BBR_BPC	BBR/BPC2, ATBPC...	basic pentacysteine 2 (.1.2.3)		Potri.010G101400 [exp]	33.27	0.7242

Compare expression of checked genes

Potri.010G042900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.