Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G60790 604 / 0 TBL2 TRICHOME BIREFRINGENCE-LIKE 2, Plant protein of unknown function (DUF828) (.1) AT5G06700 453 / 9e-154 TBR TRICHOME BIREFRINGENCE, Plant protein of unknown function (DUF828) (.1) AT3G12060 448 / 2e-152 TBL1 TRICHOME BIREFRINGENCE-LIKE 1, Plant protein of unknown function (DUF828) (.1) AT5G49340 418 / 6e-142 TBL4 TRICHOME BIREFRINGENCE-LIKE 4 (.1) AT5G20590 405 / 7e-137 TBL5 TRICHOME BIREFRINGENCE-LIKE 5 (.1) AT3G62390 375 / 3e-125 TBL6 TRICHOME BIREFRINGENCE-LIKE 6 (.1) AT5G19160 339 / 4e-111 TBL11 TRICHOME BIREFRINGENCE-LIKE 11 (.1) AT3G06080 324 / 3e-105 TBL10 TRICHOME BIREFRINGENCE-LIKE 10, Plant protein of unknown function (DUF828) (.1), Plant protein of unknown function (DUF828) (.2) AT5G06230 293 / 1e-94 TBL9 TRICHOME BIREFRINGENCE-LIKE 9 (.1.2) AT3G11570 292 / 2e-93 TBL8 TRICHOME BIREFRINGENCE-LIKE 8 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G193900 [exp] 467 / 8e-159 AT5G06700 681 / 0.0 TRICHOME BIREFRINGENCE, Plant protein of unknown function (DUF828) (.1) Potri.016G059300 [exp] 456 / 2e-154 AT5G06700 654 / 0.0 TRICHOME BIREFRINGENCE, Plant protein of unknown function (DUF828) (.1) Potri.001G010900 [exp] 431 / 6e-146 AT5G06700 472 / 5e-161 TRICHOME BIREFRINGENCE, Plant protein of unknown function (DUF828) (.1) Potri.T171301 [exp] 428 / 1e-145 AT5G49340 461 / 2e-160 TRICHOME BIREFRINGENCE-LIKE 4 (.1) Potri.008G108500 [exp] 428 / 1e-145 AT5G49340 460 / 7e-160 TRICHOME BIREFRINGENCE-LIKE 4 (.1) Potri.006G071500 [exp] 416 / 1e-140 AT5G20590 633 / 0.0 TRICHOME BIREFRINGENCE-LIKE 5 (.1) Potri.018G133000 [exp] 410 / 4e-138 AT5G20590 606 / 0.0 TRICHOME BIREFRINGENCE-LIKE 5 (.1) Potri.002G195800 [exp] 370 / 4e-122 AT3G62390 593 / 0.0 TRICHOME BIREFRINGENCE-LIKE 6 (.1) Potri.008G203900 [exp] 313 / 3e-101 AT5G19160 652 / 0.0 TRICHOME BIREFRINGENCE-LIKE 11 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013035 [exp] 664 / 0 AT1G60790 595 / 0.0 TRICHOME BIREFRINGENCE-LIKE 2, Plant protein of unknown function (DUF828) (.1) Lus10029126 [exp] 616 / 0 AT1G60790 527 / 0.0 TRICHOME BIREFRINGENCE-LIKE 2, Plant protein of unknown function (DUF828) (.1) Lus10021066 [exp] 456 / 2e-154 AT5G06700 671 / 0.0 TRICHOME BIREFRINGENCE, Plant protein of unknown function (DUF828) (.1) Lus10030900 [exp] 397 / 4e-137 AT1G60790 371 / 2e-127 TRICHOME BIREFRINGENCE-LIKE 2, Plant protein of unknown function (DUF828) (.1) Lus10011932 [exp] 399 / 2e-134 AT5G20590 543 / 0.0 TRICHOME BIREFRINGENCE-LIKE 5 (.1) Lus10027637 [exp] 392 / 1e-131 AT5G20590 540 / 0.0 TRICHOME BIREFRINGENCE-LIKE 5 (.1) Lus10037726 [exp] 383 / 3e-128 AT5G49340 435 / 3e-150 TRICHOME BIREFRINGENCE-LIKE 4 (.1) Lus10002430 [exp] 376 / 4e-125 AT3G62390 531 / 0.0 TRICHOME BIREFRINGENCE-LIKE 6 (.1) Lus10004159 [exp] 341 / 1e-110 AT5G06700 552 / 0.0 TRICHOME BIREFRINGENCE, Plant protein of unknown function (DUF828) (.1) Lus10034041 [exp] 317 / 1e-102 AT5G19160 605 / 0.0 TRICHOME BIREFRINGENCE-LIKE 11 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0264 [poplar] [flax] SGNH_hydrolase PF13839 [poplar] [flax] PC-Esterase GDSL/SGNH-like Acyl-Esterase family found in Pmr5 and Cas1p CL0264 [poplar] [flax] PF14416 [poplar] [flax] PMR5N PMR5 N terminal Domain
Representative CDS sequence Show only first row Show all	>Potri.010G043300.1 pacid=42798354 polypeptide=Potri.010G043300.1.p locus=Potri.010G043300 ID=Potri.010G043300.1.v4.1 annot-version=v4.1 ATGGAATCTAAAAGACTTGCCTTGCCAGACCAGCTTCTTGCGCCCAGAAGGAAGCCATTTCTGTTGTGGGTTGTTGCTTCTCTTATAATACTCTCTCTCT TCTTTCTCACTACTTCTTTCAAGGGTCGAATTGTGACCCCTTTCTTTCAAGGCTTCAATAGTGTTACTCGTAATTCTTCTCTTGTTTCATGGCCTTTCTC TCGTTTTCCTCCTTCCGAAAATAGTACTGCCAGTCCCCCGTCTAGCGTGATAGGGGTCGTTTTAGAGAAAACCTATGTCGGCAATTTCACTGAGATTACT CAAAATGGAAGTTTTGGTGATGAAGCAACTTCTGTACCAAAATCCCCTGAAGCAAAAAGTGGGAATTTGACAGATTCTAGCGGAGATGGGGGGGTTTTAG AGAGGCCCCTTTTGGGTGTTATTGAAGTTGGGAATCACAGCCTTTCTAGCAATGTGGATGATGCAGATGCAAAGAGAAGCGCAGAAGGAAAATCTGTAGA AAATCTTATTGCAGAAAATAAAAATGAGGGCAATGAAGAAAATGGTAGATTCCCTGGTGGTGGAGGCGAACAAGGGGGCCATAATAAAGTTTCTTTTGAG AAATGTGACATATTTGATGGTAAGTGGGTGAGGGATGATTCGAAGCCATACTATCCTCCAGGCTCCTGTCCTTATATTGATAAGGATTTTGATTGTCACC TAAATGGGAGGCCAGATGTTGGATTTGTTAAATGGAAATGGCAGCCAAATGGGTGTGACATTCCAAGTTTGAACGCAACTGATTTTCTTGAGAGATTAAG AGGAAAGAAGCTGGTTTTTGTTGGGGATTCACTTAATAGGAACATGTGGGAGTCTCTGGTGTGCATCCTTAGCAATAGCATCGGAAAGAAGAAACGAGTT TATGAGATATCAGGAAGGAGGGAATTCAAGAAGAAGGGTTTCTATGCTTTTAGATTTGAGGATTACAACTGCACGGTGGATTTTGTTAGTTCTCCATTTC TTGTTAGAGAATCATCCTTCAAAAGTAAAAATGGAACATTTGAGACCTTAAGGTTGGATTTGATGGACCGGACAACTTCAATGTACCATGATGCAGATGT CATAATTTTTAATACAGGTCATTGGTGGACCCATGATAAAACTTCCAGAGGAGAAGACTATTACCAGGAAGGTAATCATATACACCGAAGACTCAAGGTC CTGGAAGCATATAAGAGAGCACTTTTGACTTGGGCAAGATGGATCGACAAGAACATTGATAGAAATCGAACACTGGTTTTATTCAAAGGTTATTCAGTTA CTCATTTCAGAGGAGGCCAGTGGAACTCAGGAGGACGGTGTCACAAAGAAACAGAGCCAATATTTAATACAGCTTACTTAGGAAAGTACCCTTCGAAAAT GAGAGCTTTCCAACATGTGCTTCAAGAAACCAAAACTCCAGTTATTTATCTAAACATAAGTAGGCTCACAGCCTATAGAAAAGATGCGCATCCTTCTATT TATAGAATGACGTACAATACAGCAGAAGAACGAATTGCTGCAGAGCGATCTCAAGATTGCAGTCATTGGTGCTTACCTGGAGTACCAGATACTTGGAATG AGTTGCTATATGCTTCACTATTGAAGGTCGGCCTGGGATCTTGGAAAAAGTGA
AA sequence Show only first row Show all	>Potri.010G043300.1 pacid=42798354 polypeptide=Potri.010G043300.1.p locus=Potri.010G043300 ID=Potri.010G043300.1.v4.1 annot-version=v4.1 MESKRLALPDQLLAPRRKPFLLWVVASLIILSLFFLTTSFKGRIVTPFFQGFNSVTRNSSLVSWPFSRFPPSENSTASPPSSVIGVVLEKTYVGNFTEIT QNGSFGDEATSVPKSPEAKSGNLTDSSGDGGVLERPLLGVIEVGNHSLSSNVDDADAKRSAEGKSVENLIAENKNEGNEENGRFPGGGGEQGGHNKVSFE KCDIFDGKWVRDDSKPYYPPGSCPYIDKDFDCHLNGRPDVGFVKWKWQPNGCDIPSLNATDFLERLRGKKLVFVGDSLNRNMWESLVCILSNSIGKKKRV YEISGRREFKKKGFYAFRFEDYNCTVDFVSSPFLVRESSFKSKNGTFETLRLDLMDRTTSMYHDADVIIFNTGHWWTHDKTSRGEDYYQEGNHIHRRLKV LEAYKRALLTWARWIDKNIDRNRTLVLFKGYSVTHFRGGQWNSGGRCHKETEPIFNTAYLGKYPSKMRAFQHVLQETKTPVIYLNISRLTAYRKDAHPSI YRMTYNTAEERIAAERSQDCSHWCLPGVPDTWNELLYASLLKVGLGSWKK

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G60790		TBL2	TRICHOME BIREFRINGENCE-LIKE 2,...		Potri.010G043300 [exp]	0	1
AT1G11915			unknown protein		Potri.011G007900 [exp]	1.41	0.9036
AT5G28150			Plant protein of unknown funct...		Potri.002G051600 [exp]	4.00	0.8744
AT1G29270			unknown protein		Potri.004G060800 [exp]	7.54	0.8725
AT5G55650			unknown protein		Potri.001G367100 [exp]	7.93	0.8717
AT3G16240		DELTA-TIP1, ATT...	delta tonoplast integral prote...		Potri.001G186700 [exp]	9.32	0.8645	TIP2.4
AT1G34350			unknown protein		Potri.013G114800 [exp]	9.48	0.9013
AT1G53300		TTL1	tetratricopetide-repeat thiore...		Potri.011G111500 [exp]	10.81	0.8764
AT5G47540			Mo25 family protein (.1)		Potri.002G222800 [exp]	10.81	0.8958
AT4G10810			unknown protein		Potri.014G013600 [exp]	11.66	0.8743
AT1G13740		AFP2	ABI five binding protein 2 (.1...		Potri.004G120600 [exp]	15.29	0.8741

Compare expression of checked genes

Potri.010G043300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.