Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G70520 803 / 0 ASG6, CRK2 ALTERED SEED GERMINATION 6, cysteine-rich RLK (RECEPTOR-like protein kinase) 2 (.1) AT5G40380 461 / 6e-155 CRK42 cysteine-rich RLK (RECEPTOR-like protein kinase) 42 (.1) AT1G70530 435 / 1e-144 CRK3 cysteine-rich RLK (RECEPTOR-like protein kinase) 3 (.1) AT1G19090 387 / 7e-127 CRK1, RKF2 CYSTEINE-RICH RLK \(RECEPTOR-LIKE PROTEIN KINASE\) 1, receptor-like serine/threonine kinase 2 (.1) AT4G28670 305 / 8e-95 Protein kinase family protein with domain of unknown function (DUF26) (.1) AT4G11490 291 / 1e-89 CRK33 cysteine-rich RLK (RECEPTOR-like protein kinase) 33 (.1) AT4G38830 289 / 2e-88 CRK26 cysteine-rich RLK (RECEPTOR-like protein kinase) 26 (.1) AT4G23230 283 / 7e-88 CRK15 cysteine-rich RLK (RECEPTOR-like protein kinase) 15 (.1) AT4G23140 286 / 4e-87 RLK5, CRK6 cysteine-rich RLK (RECEPTOR-like protein kinase) 6 (.1), cysteine-rich RLK (RECEPTOR-like protein kinase) 6 (.2) AT4G21230 284 / 7e-87 CRK27 cysteine-rich RLK (RECEPTOR-like protein kinase) 27 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G043800 [exp] 1189 / 0 AT1G70520 805 / 0.0 ALTERED SEED GERMINATION 6, cysteine-rich RLK (RECEPTOR-like protein kinase) 2 (.1) Potri.007G056000 [exp] 508 / 4e-173 AT4G28670 579 / 0.0 Protein kinase family protein with domain of unknown function (DUF26) (.1) Potri.012G087000 [exp] 476 / 3e-160 AT5G40380 567 / 0.0 cysteine-rich RLK (RECEPTOR-like protein kinase) 42 (.1) Potri.001G348000 [exp] 471 / 2e-158 AT5G40380 729 / 0.0 cysteine-rich RLK (RECEPTOR-like protein kinase) 42 (.1) Potri.010G043900 [exp] 448 / 7e-150 AT1G70530 805 / 0.0 cysteine-rich RLK (RECEPTOR-like protein kinase) 3 (.1) Potri.017G141400 [exp] 387 / 8e-126 AT5G40380 390 / 6e-127 cysteine-rich RLK (RECEPTOR-like protein kinase) 42 (.1) Potri.017G141300 [exp] 379 / 6e-122 AT5G40380 382 / 4e-123 cysteine-rich RLK (RECEPTOR-like protein kinase) 42 (.1) Potri.001G276600 [exp] 364 / 2e-117 AT1G70520 373 / 8e-121 ALTERED SEED GERMINATION 6, cysteine-rich RLK (RECEPTOR-like protein kinase) 2 (.1) Potri.011G028700 [exp] 310 / 2e-95 AT4G21410 460 / 4e-152 cysteine-rich RLK (RECEPTOR-like protein kinase) 29 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029123 [exp] 882 / 0 AT1G70520 822 / 0.0 ALTERED SEED GERMINATION 6, cysteine-rich RLK (RECEPTOR-like protein kinase) 2 (.1) Lus10030589 [exp] 848 / 0 AT1G70520 813 / 0.0 ALTERED SEED GERMINATION 6, cysteine-rich RLK (RECEPTOR-like protein kinase) 2 (.1) Lus10030901 [exp] 832 / 0 AT1G70520 803 / 0.0 ALTERED SEED GERMINATION 6, cysteine-rich RLK (RECEPTOR-like protein kinase) 2 (.1) Lus10013039 [exp] 721 / 0 AT1G70520 699 / 0.0 ALTERED SEED GERMINATION 6, cysteine-rich RLK (RECEPTOR-like protein kinase) 2 (.1) Lus10029122 [exp] 437 / 4e-145 AT1G70530 789 / 0.0 cysteine-rich RLK (RECEPTOR-like protein kinase) 3 (.1) Lus10013040 [exp] 431 / 4e-143 AT1G70530 788 / 0.0 cysteine-rich RLK (RECEPTOR-like protein kinase) 3 (.1) Lus10008764 [exp] 300 / 5e-96 AT5G40380 426 / 6e-145 cysteine-rich RLK (RECEPTOR-like protein kinase) 42 (.1) Lus10010960 [exp] 301 / 6e-94 AT1G70520 373 / 2e-121 ALTERED SEED GERMINATION 6, cysteine-rich RLK (RECEPTOR-like protein kinase) 2 (.1) Lus10038940 [exp] 293 / 6e-93 AT4G23180 341 / 8e-112 cysteine-rich RLK (RECEPTOR-like protein kinase) 10 (.1) Lus10007632 [exp] 296 / 1e-90 AT4G05200 624 / 0.0 cysteine-rich RLK (RECEPTOR-like protein kinase) 25 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF00069 [poplar] [flax] Pkinase Protein kinase domain CL0016 [poplar] [flax] PF01657 [poplar] [flax] Stress-antifung Salt stress response/antifungal
Representative CDS sequence Show only first row Show all	>Potri.010G043700.2 pacid=42799270 polypeptide=Potri.010G043700.2.p locus=Potri.010G043700 ID=Potri.010G043700.2.v4.1 annot-version=v4.1 ATGACAAAAGCAATCCAATCGATCCCTTACCAAAGGATTTTCTTCTGCTTTTTTGGGTATGTTTTGTTGCGTGAACGGGTGGTGGTTGGACATCCTAGAT CCCAGACGGTCCAAGTTATGTGTGGACGCCAACTGGATCACAACGCAACTATCTTCGTGCCAAATTTTGTTGCCACAATGGAAAACATCAGTGAACAGAT GAGTGCGTCAGGCTTTGGAGTTGCAGTTTCAGGCTCTGGACCTGACATTAACTATGGCCTTGCCCAATGCTATGGGGACCTGTCGTTACTTGACTGTGTA CTATGCTATGCCGAGGCACGTACGGTTCTTCCACAATGCTATCCTTATAATGGGGGTCGCATTCACCTTGATGGTTGCTTCATTCGAGCTGAGAATTATA GTTTCTATGAAGAATATCTAGGACCTGGAGATAAGGCTGTTTGTGGAAATACAACGCGTAAGAATTCAACCTTTGCGGAATCGACAAGGCAGGCTGTCTC ACAAGCAGTCACTAGCGCATCAAATAATCAAGGTTATGCACGGGTACAGCTCACAGTTCCGGGCACAAATGAGTCAGCTTATGTGTTAGCTAATTGCTGG AAGACATTAAATGCAAGCTCTTGCAGGGCATGCTTGGAGAATGCCACTGCATCTATATTGGGATGTTTGCCATGGTCGGAGGGCAGAGCACTATATACTG GGTGTTTCATGAGGTACTCGGATATAGATTTTCTCAACGACGAACTTGGGAATGGAGGTTCCAGAGGGAGCATTGTAATAATAGTTGTTTCAGTTATCAG CTCTCTGGTGGTTTTGGGACTTGGAGTATCTATAGGAGTTCATATATGGAAACGCAGATATATAATGAAGAAAAGAAGAGGTTCTAATGAGGCTCAAAAG GTGGCCAGAACCCTCAATGACAGTAGCTTGAACTTCAAGTACTCGACACTTGAGAAGGCTACTGGATCTTTTGACGACACCAACAAGCTTGGACAAGGAG GATTTGGATCTGTTTACAAGGGAGCTTTACCTGATGGAAGGGAGATTGCAGTGAAGAGGCTCTTCTTTAACAACAGACATAGAGCTAAGGATTTCTACAA TGAACTAAACATGATAAGTAGTGTGGAACACAAAAATCTGGTCAGGTTGTTGGGGTGCAGTTGTTCTGGACCTGAAAGCCTTCTCGTCTATGAATTCCTG CCTAACAGGAGTCTCGATCGTTTCATCTTCGATCAGAACAAAGGCAAGGAGCTGACCTGGGAGAAGAGATATGAGATAATTACTGGCACCGCAGAAGGTT TAGCCTACCTTCATATGAACTCCAGTATCAGAATCATTCACAGAGATATAAAGGCCAGCAATATCTTGTTAGATTCAAGGCTTCGTGCTAAAATTGCTGA TTTTGGGTTAGCCAGGTCTTTCCAAGACGATAAGAGTCACATCAGCACAGCCATTGCAGGAACATTAGGTTACATGGCTCCGGAATACCTAGCCCATGGT CAGTTAACAGAAAAGGTAGATGTCTACGGCTTTGGGGTGCTTTTGTTGGAGATTGTTACAGGAAGGCAGAATAACAGGAGCAAAAACTCAGAATACACGG AGAGTCTAGTCATACTAACGTGGAAAAAATTCCAGGCAGGAACTGTGGAGGAGCTTTATGACCCAAATCTGATGCTGCATAACCACCATGATAACAATGT TAAGAATGATGTTAAGAGAGCAGTTCATGTGGGCCTTCTGTGCACCCAAAAAATCCCATCACTTCGACCAACAATGTCAAAGGCTCTACAAATGCTAACA ACTGAGGAACATCTCCCTCGGCCCTCTAATCCCCCTTTCATAGACGAAATGACCATGGAACTCAATGACACATGCGAGGATCCATGTTACCCCCTTAATT CTGGTACTTCGGCATCAATTGCCACCATTGAAAATAGTTCCTTCCACCCAAGATAA
AA sequence Show only first row Show all	>Potri.010G043700.2 pacid=42799270 polypeptide=Potri.010G043700.2.p locus=Potri.010G043700 ID=Potri.010G043700.2.v4.1 annot-version=v4.1 MTKAIQSIPYQRIFFCFFGYVLLRERVVVGHPRSQTVQVMCGRQLDHNATIFVPNFVATMENISEQMSASGFGVAVSGSGPDINYGLAQCYGDLSLLDCV LCYAEARTVLPQCYPYNGGRIHLDGCFIRAENYSFYEEYLGPGDKAVCGNTTRKNSTFAESTRQAVSQAVTSASNNQGYARVQLTVPGTNESAYVLANCW KTLNASSCRACLENATASILGCLPWSEGRALYTGCFMRYSDIDFLNDELGNGGSRGSIVIIVVSVISSLVVLGLGVSIGVHIWKRRYIMKKRRGSNEAQK VARTLNDSSLNFKYSTLEKATGSFDDTNKLGQGGFGSVYKGALPDGREIAVKRLFFNNRHRAKDFYNELNMISSVEHKNLVRLLGCSCSGPESLLVYEFL PNRSLDRFIFDQNKGKELTWEKRYEIITGTAEGLAYLHMNSSIRIIHRDIKASNILLDSRLRAKIADFGLARSFQDDKSHISTAIAGTLGYMAPEYLAHG QLTEKVDVYGFGVLLLEIVTGRQNNRSKNSEYTESLVILTWKKFQAGTVEELYDPNLMLHNHHDNNVKNDVKRAVHVGLLCTQKIPSLRPTMSKALQMLT TEEHLPRPSNPPFIDEMTMELNDTCEDPCYPLNSGTSASIATIENSSFHPR

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G70520		ASG6, CRK2	ALTERED SEED GERMINATION 6, cy...		Potri.010G043700 [exp]	0	1
AT3G47420		AtG3Pp1, ATPS3	Glycerol-3-phosphate permease ...		Potri.003G109300 [exp]	5.38	0.7720
AT2G22300	CAMTA	SR1, CAMTA3	CALMODULIN-BINDING TRANSCRIPTI...		Potri.005G075100 [exp]	9.89	0.8226
AT5G58720			smr (Small MutS Related) domai...		Potri.009G046300 [exp]	10.58	0.8010
AT5G36930			Disease resistance protein (TI...		Potri.006G270000 [exp]	11.13	0.8154
AT4G02040			unknown protein		Potri.008G198000 [exp]	16.97	0.7979
AT3G12250	bZIP	BZIP45, TGA6	TGACG motif-binding factor 6 (...		Potri.001G029800 [exp]	17.66	0.7768
AT4G02350		SEC15B	exocyst complex component sec1...		Potri.002G203200 [exp]	17.74	0.7626
AT4G38040			Exostosin family protein (.1)		Potri.010G197900 [exp]	18.76	0.7450
AT5G05800			unknown protein		Potri.001G268908 [exp]	19.07	0.7968
AT1G53050			Protein kinase superfamily pro...		Potri.013G130000 [exp]	23.04	0.8109

Compare expression of checked genes

Potri.010G043700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.