Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G70530 805 / 0 CRK3 cysteine-rich RLK (RECEPTOR-like protein kinase) 3 (.1) AT5G40380 531 / 0 CRK42 cysteine-rich RLK (RECEPTOR-like protein kinase) 42 (.1) AT1G70520 464 / 2e-156 ASG6, CRK2 ALTERED SEED GERMINATION 6, cysteine-rich RLK (RECEPTOR-like protein kinase) 2 (.1) AT1G19090 449 / 6e-151 CRK1, RKF2 CYSTEINE-RICH RLK \(RECEPTOR-LIKE PROTEIN KINASE\) 1, receptor-like serine/threonine kinase 2 (.1) AT4G28670 403 / 9e-133 Protein kinase family protein with domain of unknown function (DUF26) (.1) AT4G05200 313 / 2e-97 CRK25 cysteine-rich RLK (RECEPTOR-like protein kinase) 25 (.1) AT4G38830 310 / 1e-96 CRK26 cysteine-rich RLK (RECEPTOR-like protein kinase) 26 (.1) AT4G23180 306 / 5e-95 RLK4, CRK10 cysteine-rich RLK (RECEPTOR-like protein kinase) 10 (.1) AT4G23220 307 / 1e-94 CRK14 cysteine-rich RLK (RECEPTOR-like protein kinase) 14 (.1) AT4G23230 298 / 8e-94 CRK15 cysteine-rich RLK (RECEPTOR-like protein kinase) 15 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G348000 [exp] 568 / 0 AT5G40380 729 / 0.0 cysteine-rich RLK (RECEPTOR-like protein kinase) 42 (.1) Potri.012G087000 [exp] 497 / 1e-168 AT5G40380 567 / 0.0 cysteine-rich RLK (RECEPTOR-like protein kinase) 42 (.1) Potri.010G043800 [exp] 463 / 1e-155 AT1G70520 805 / 0.0 ALTERED SEED GERMINATION 6, cysteine-rich RLK (RECEPTOR-like protein kinase) 2 (.1) Potri.010G043700 [exp] 462 / 1e-155 AT1G70520 803 / 0.0 ALTERED SEED GERMINATION 6, cysteine-rich RLK (RECEPTOR-like protein kinase) 2 (.1) Potri.007G056000 [exp] 412 / 5e-136 AT4G28670 579 / 0.0 Protein kinase family protein with domain of unknown function (DUF26) (.1) Potri.017G141300 [exp] 410 / 2e-134 AT5G40380 382 / 4e-123 cysteine-rich RLK (RECEPTOR-like protein kinase) 42 (.1) Potri.017G141400 [exp] 409 / 2e-134 AT5G40380 390 / 6e-127 cysteine-rich RLK (RECEPTOR-like protein kinase) 42 (.1) Potri.001G276600 [exp] 402 / 2e-132 AT1G70520 373 / 8e-121 ALTERED SEED GERMINATION 6, cysteine-rich RLK (RECEPTOR-like protein kinase) 2 (.1) Potri.004G025200 [exp] 323 / 1e-101 AT4G23180 665 / 0.0 cysteine-rich RLK (RECEPTOR-like protein kinase) 10 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029122 [exp] 870 / 0 AT1G70530 789 / 0.0 cysteine-rich RLK (RECEPTOR-like protein kinase) 3 (.1) Lus10013040 [exp] 854 / 0 AT1G70530 788 / 0.0 cysteine-rich RLK (RECEPTOR-like protein kinase) 3 (.1) Lus10029123 [exp] 495 / 3e-168 AT1G70520 822 / 0.0 ALTERED SEED GERMINATION 6, cysteine-rich RLK (RECEPTOR-like protein kinase) 2 (.1) Lus10030901 [exp] 477 / 2e-161 AT1G70520 803 / 0.0 ALTERED SEED GERMINATION 6, cysteine-rich RLK (RECEPTOR-like protein kinase) 2 (.1) Lus10030589 [exp] 470 / 3e-158 AT1G70520 813 / 0.0 ALTERED SEED GERMINATION 6, cysteine-rich RLK (RECEPTOR-like protein kinase) 2 (.1) Lus10008764 [exp] 380 / 4e-127 AT5G40380 426 / 6e-145 cysteine-rich RLK (RECEPTOR-like protein kinase) 42 (.1) Lus10010960 [exp] 376 / 1e-122 AT1G70520 373 / 2e-121 ALTERED SEED GERMINATION 6, cysteine-rich RLK (RECEPTOR-like protein kinase) 2 (.1) Lus10018382 [exp] 324 / 8e-102 AT4G21410 605 / 0.0 cysteine-rich RLK (RECEPTOR-like protein kinase) 29 (.1) Lus10007632 [exp] 321 / 3e-100 AT4G05200 624 / 0.0 cysteine-rich RLK (RECEPTOR-like protein kinase) 25 (.1) Lus10018379 [exp] 315 / 3e-98 AT4G23180 566 / 0.0 cysteine-rich RLK (RECEPTOR-like protein kinase) 10 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF00069 [poplar] [flax] Pkinase Protein kinase domain CL0016 [poplar] [flax] PF01657 [poplar] [flax] Stress-antifung Salt stress response/antifungal
Representative CDS sequence Show only first row Show all	>Potri.010G043900.1 pacid=42799041 polypeptide=Potri.010G043900.1.p locus=Potri.010G043900 ID=Potri.010G043900.1.v4.1 annot-version=v4.1 ATGCATCATTCTTTCTTAATTCTGCTTTCTTTTCTATGTTTCTTTGTAAATCTTTCTCTGTCTGATCCAAGAGCTACCCAGGCAGCTCTAATATGCACAA ACAGAACAGCAGCGATGCCAGAGAGGCAAACCTTCGTTGCAAACTTCTTGGCAGCGTTGGACGCAGTGACACCGCTGATTTTGAGACAAAAATATGCAGC TGTTATTAATGGGACGGGAAGCACTACAGTTTATGCTTTCGGTGAGTGCATGAAAGATCTTGATGGAACAGATTGCAACCTCTGTTTTGCTCAGTGCAAG ACTCAGGTTTTGAGGTGCCTCCCTTTCCAGCGAGGCATTCGTGGAGGTAGAATTTTCTGTGATGGGTGCTATGTAAGGTACGATGATTATGATTTCTTTA ATGAGACATTGAGTACACAAGATAAGACTATTTGTGCAAGTGCGGATTTCAGTGGTGGTAATAAGACTGTTTTCAGCGCTAATGTTTTGGAGTTAATGAG GAACTTGAGTGTATCAGCTCCAAAGAATGATGGGTTCTATGTTGGGTCTGTGGATAGAGGGAATGTTTCAGTTTTTGGGTTGGCTCAGTGCTGGGAGTTT GTGAATGGAAGTGCTTGTGAGACTTGTTTAACAAATGCTGTGTCTAGGATTGGTTCATGTACTCCAAAGGAAGAAGGCAGAGCTTTGAATGCTGGTTGTT ACTTGAGATACTCAACTAAAAAATTTTATGATAATTCAACCTCTCCAATTGGAAGAAATAAAAGTCGGGGCCGCTTGACGGTTATTCTGGCTGTGACATC TTCCAGTGTGGCTGTTGCTTTGATGATTGCAACAACTGTTTTCTTTGTGAGGAGGAGAGTCGTGGAAAAGAGGAGAGCAAGGAAGGAACTTGGTGCTTTA CTGGTCACAGTGAACAAGTCCAAGCTCAATTTCTCATATGAATCTCTTGAAAAAGCTACAAATTACTTCCACCTTTCAAACAAACTGGGACAAGGAGGAT CTGGATCAGTTTACAAAGGAACGTTGTCGGATGGGACTACTGTTGCTATAAAGAGGCTTCTATTCAACACAAGGCAATGGGTGGATCACTTCTTTAACGA AGTGAATTTGATCAGTGGCATTCAACATAAGAATCTAGCAAAGTTGTTGGGATGTAGCATTACAGGACCAGAAAGCCTTCTTGTTTATGAATATGTGCCA AATCAAAGCCTTCACGATTACTTTTCTGCCAAAACGAATCTCCGACCATTATCATGGGCAATGAGGTTTAACATCATATTGGGTACAGCTGAGGGCTTAG CCTATCTTCATGAGGAATCAGAGTTGAGAATCATACATAGAGACATTAAACTGAGCAATGTTCTGCTCGATGAGGATTTTAACCCAAAAATAGCTGATTT TGGACTTGCTAGACTATTTCCAGAAGATAAGTCTCACATCAGTACGGCAATTGCTGGCACATTAGGTTACATGGCCCCAGAGTATGTTGTTCGTGGAAAA CTGACCGAGAAGGTTGACGTTTACAGTTTTGGAGTTCTTGTGATTGAGGTTGTCAGCGGAAAAGGGAAAAATTCGGTCCCTCAAGATTCACGATCTATCC TACAAAAGGTATGGAGCCTGTATGGAAATGGTAGACTATGTGAAGCTGTTGATCCAGTCCTAGAAGGAAATTTTCAAGAAGACGAAGCATCGCGATTACT TCAAATAGGCCTACTTTGTGTACAAGCTTCGCCAGAGCTGCGTCCATCTATGTCGATCATTGTTAAAATGATTAATGATAACCATGAAATTCCTCAGCCA ACACAACCACCATTTCTCAGTCCTGCTACTATGGAGAGCAGCCCATTGAGGCAGCCTGAGTCTTCTACCCACTCTTCAGGGAATAACATGACACAAAGCT GGATCGAGCCCAGATGA
AA sequence Show only first row Show all	>Potri.010G043900.1 pacid=42799041 polypeptide=Potri.010G043900.1.p locus=Potri.010G043900 ID=Potri.010G043900.1.v4.1 annot-version=v4.1 MHHSFLILLSFLCFFVNLSLSDPRATQAALICTNRTAAMPERQTFVANFLAALDAVTPLILRQKYAAVINGTGSTTVYAFGECMKDLDGTDCNLCFAQCK TQVLRCLPFQRGIRGGRIFCDGCYVRYDDYDFFNETLSTQDKTICASADFSGGNKTVFSANVLELMRNLSVSAPKNDGFYVGSVDRGNVSVFGLAQCWEF VNGSACETCLTNAVSRIGSCTPKEEGRALNAGCYLRYSTKKFYDNSTSPIGRNKSRGRLTVILAVTSSSVAVALMIATTVFFVRRRVVEKRRARKELGAL LVTVNKSKLNFSYESLEKATNYFHLSNKLGQGGSGSVYKGTLSDGTTVAIKRLLFNTRQWVDHFFNEVNLISGIQHKNLAKLLGCSITGPESLLVYEYVP NQSLHDYFSAKTNLRPLSWAMRFNIILGTAEGLAYLHEESELRIIHRDIKLSNVLLDEDFNPKIADFGLARLFPEDKSHISTAIAGTLGYMAPEYVVRGK LTEKVDVYSFGVLVIEVVSGKGKNSVPQDSRSILQKVWSLYGNGRLCEAVDPVLEGNFQEDEASRLLQIGLLCVQASPELRPSMSIIVKMINDNHEIPQP TQPPFLSPATMESSPLRQPESSTHSSGNNMTQSWIEPR

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G70530		CRK3	cysteine-rich RLK (RECEPTOR-li...		Potri.010G043900 [exp]	0	1
AT3G48520		CYP94B3	cytochrome P450, family 94, su...		Potri.005G220700 [exp]	1.00	0.9458	Pt-CYP94.7
AT1G15060			Uncharacterised conserved prot...		Potri.010G119700 [exp]	1.73	0.9172
AT1G03220			Eukaryotic aspartyl protease f...		Potri.002G054900 [exp]	2.00	0.9273
AT1G28480		roxy19, GRX480	Thioredoxin superfamily protei...		Potri.017G017300 [exp]	2.00	0.9112	PtrGrx3
AT1G43910			P-loop containing nucleoside t...		Potri.007G019600 [exp]	2.82	0.8945
AT5G04760	MYB		Duplicated homeodomain-like su...		Potri.010G240800 [exp]	3.46	0.8972
AT2G22860		ATPSK2	phytosulfokine 2 precursor (.1...		Potri.002G116300 [exp]	5.00	0.9001
AT1G49050			Eukaryotic aspartyl protease f...		Potri.015G053300 [exp]	6.63	0.8584
AT3G29400		ATEXO70E1	exocyst subunit exo70 family p...		Potri.017G093700 [exp]	8.36	0.8948
AT3G11840		PUB24	plant U-box 24 (.1)		Potri.006G202700 [exp]	8.94	0.8612

Compare expression of checked genes

Potri.010G043900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.