Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G10760 1875 / 0 GWD1, GWD, SOP1, SOP, SEX1 STARCH EXCESS 1, Pyruvate phosphate dikinase, PEP/pyruvate binding domain (.1) AT4G24450 1186 / 0 PWD, GWD3, ATGWD2 "phosphoglucan, water dikinase", phosphoglucan, water dikinase (.1) AT5G26570 178 / 7e-45 ATGWD3, OK1, PWD PHOSPHOGLUCAN WATER DIKINASE, catalytics;carbohydrate kinases;phosphoglucan, water dikinases (.1.2) AT1G69830 49 / 4e-05 ATAMY3, AMY3 alpha-amylase-like 3 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G188150 [exp] 2669 / 0 AT1G10760 1781 / 0.0 STARCH EXCESS 1, Pyruvate phosphate dikinase, PEP/pyruvate binding domain (.1) Potri.002G234500 [exp] 185 / 4e-47 AT5G26570 1561 / 0.0 PHOSPHOGLUCAN WATER DIKINASE, catalytics;carbohydrate kinases;phosphoglucan, water dikinases (.1.2) Potri.014G147900 [exp] 175 / 7e-44 AT5G26570 1509 / 0.0 PHOSPHOGLUCAN WATER DIKINASE, catalytics;carbohydrate kinases;phosphoglucan, water dikinases (.1.2) Potri.010G092900 [exp] 51 / 8e-06 AT1G69830 1236 / 0.0 alpha-amylase-like 3 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013044 [exp] 2185 / 0 AT1G10760 1910 / 0.0 STARCH EXCESS 1, Pyruvate phosphate dikinase, PEP/pyruvate binding domain (.1) Lus10029118 [exp] 2173 / 0 AT1G10760 1889 / 0.0 STARCH EXCESS 1, Pyruvate phosphate dikinase, PEP/pyruvate binding domain (.1) Lus10032829 [exp] 1197 / 0 AT4G24450 1571 / 0.0 "phosphoglucan, water dikinase", phosphoglucan, water dikinase (.1) Lus10041275 [exp] 174 / 1e-43 AT5G26570 1353 / 0.0 PHOSPHOGLUCAN WATER DIKINASE, catalytics;carbohydrate kinases;phosphoglucan, water dikinases (.1.2) Lus10037434 [exp] 170 / 3e-42 AT5G26570 1508 / 0.0 PHOSPHOGLUCAN WATER DIKINASE, catalytics;carbohydrate kinases;phosphoglucan, water dikinases (.1.2) Lus10013270 [exp] 50 / 2e-05 AT1G69830 1180 / 0.0 alpha-amylase-like 3 (.1) Lus10030793 [exp] 48 / 9e-05 AT1G69830 1173 / 0.0 alpha-amylase-like 3 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0179 [poplar] [flax] ATP-grasp PF01326 [poplar] [flax] PPDK_N Pyruvate phosphate dikinase, AMP/ATP-binding domain
Representative CDS sequence Show only first row Show all	>Potri.010G044100.1 pacid=42797202 polypeptide=Potri.010G044100.1.p locus=Potri.010G044100 ID=Potri.010G044100.1.v4.1 annot-version=v4.1 ATGAGTAATCACAGTAGCATAATCGGGCATTATAAAGTTTTCAACAACCAGAGTTTGCTTCGTCCAACGGCTTCAGAGCATCGAAGCAGCAAGCTCAATT CTACAGGCATTCCTGCAAATTCTTTGTTTCAATCTGCACGTAGGCCGTTGTCCAGCTTTTATGGGAACAGTTTAAGAGTCAGGAAATCAAAATTAGGCAT CGCCGGAGCACGCCGCTCTTTTATATTCACTCCGCGAGCTGTCTTAGCCATGGATCCACCTTCTGAGCAGCTTGCAGGGAGATTCAATCTGGATGGAAAT ATTGAAATGCAGGTTTTTGTCAGCCATTCCTCTGGTTCATCCATCGCACAAGTAAATATTCAGATCAATTATAGTAGTGATTCTTTGCTCCTACACTGGG GTGTAGTACGTGATAGAAAGGAAAAATGGGTGCTTCCTTCTCTTCAGCCAGATGGAACCAAAAATTATAAGAACAGAGCCCTCAGATCTCCTTTTATGGA GTCTGGTTCCAATTCTTACATCAACATAGCGATTGATGATCCTGCGATACAAGCTATAGAGTTTCTTATAGTTGATGAAGCCCAGAATAAATGGTTTAAG AACAATGGCCAGAACTTTTATGTTGAGTTACCCACGAGAGAGAAGTTGACAATTCCTAATGTCTCGGTTCCTGAAGAACTTGTGCAGATTCAATCATATC TAAGGTGGGAAAGAAATGGGAAACAAATGTATACCCCTGAGCAAGAGAAGGAGGAATATGAAGCTGCTCGCTTTGAGCTAATGGAGAAAGTAGCCAGAGG CACTTCCATTGAGGATCTCCGTGCAACGCTGACAAACAAAAATGATATACGTGAAATTAAGGAGCCATCTGTCTCTCAAATAGAAAACAACCTACCTGAT GATCTTGTGCAATTACAAGCTTATATGAGATGGGAAAAGGCAGGGAAACCCAATTTTTCTCCCGAGCAGCAACAGAGCGAATTTGAGAAAGCAAGAGAAG AGTTGCAAGCTGAACTGGGCAAAGGTGTCTCTGTTGATGAGATTCGGAAGAAGATTAGTAAAGGAGAAATCAAGACTAATGTGTCAAAGCAACTTCAAAA CAAAAGATATTTCAGCACTGAAAGAATTCAGCGCAAAGGGAGAGACTTAGCGCAGCTTATCAACAGACATTCTGCTAAATCAGTAGAGGACAGAGCTTCC AAGTCTGTGGAGGAAAAAGCTTCAATAGAACCAAAAGTCTTGAAGGCTGTTGAGCTTTTTGCTAAGGAAAAGGAAGAACATGATGGTGGTGCTGTGCTGA ACAAGAAAATATTTAAGCTTGCTGATAAGGAACTTCTGGTACTTGTAACAAAGCCTGGTGGTAAGTTGAAGGTTCGTTTGGCCACTGATTTTGAAGAGCC AGTTACTCTTCACTGGGCTTTATCTAAAAAGGCTGGAGAGTGGATGGAGCCACCTCCAACCGTGTTGCCTCCTGGTTCAGTTGCTCTCAAGGAGGCTGCT GAAACACAACTTAAAAATGAGTCCTCTGCTAAATTTTCTTACCAGGTGCAATCTTTTGAAATAGAGATTGAAGAAGATATTTTTGTTGGTTTGCCATTTG TCCTTTTGTCTAATGGAAGATGGATAAAGAATAATGGCTCGGACTTTTATATTGAATTTAGCAGAGGATCTAAGCATGTCCAAAAGGATGCTGGTGATGG CATAGGAACAGCCAGGGCGTTGTTGGATAAAATTGCAGAACTGGAGAGTGAGGCACAGAAGTCTTTCATGCACCGATTCAATATTGCAGCAGACTTGATG GATAAAGCCAAGGATGCTGGCGAATTGGGTCTTGCAGGGATCTTGGTGTGGATGCGGTTTATGGCCACGAGGCAGCTCATATGGAATAAAAACTACAACG TCAAACCACGTGAAATCAGTAAAGCCCAGGATAGGCTTACAGACTTGCTCCAGGATATTTATGCAAGCAATCCACAGCATCAGGAGCTCTTGCGAATGAT TATGTCTACTGTTGGTCGAGGAGGTGAAGGGGATGTGGGACAACGTATTCGGGATGAAATCCTAGTTATCCAGAGAAACAATGAATGCAAGGGTGGAATG ATGGAGGAATGGCATCAGAAGTTGCATAATAACACTAGCCCTGATGATGTCATAATCTGTCAGGCATTAATTGATCATATTAAAAGCGACTTTGACATCA GTGTGTACTGGAAAACTTTGAATGAAAATGGAATCACAAAAGAGCGACTTTTAAGTTATGATCGTGCCATCCATTCTGAACCAAACTTCAGGAGAGATCA GAAGGATGGACTTTTGCGTGATCTTGGAAACTATATGAGGACTTTGAAGGCAGTTCATTCAGGTGCAGATCTTGAGTCTGCTATTACGAATTGTATGGGC TACAGATCCGAGGGTCAAGGCTTCATGGTTGGAGTGCAGATAAATCCCATTCCAGGCTTGCCATCTGGTTTCCCAGAATTGCTTCAATTTGTACTAAAAC ACGTTGAAGATAAGAATGTAGAAGCACTTATAGAGGGTTTGCTAGAGGCTCGTCAGGAGCTTAGACCTTTGCTATTTAAGTCCAACAATCGTCTTAAGGA TCTTTTATTTTTGGATATTGCACTTGATTCCACTGTTAGGACAGCTATTGAACGGGGGTACGAAGAATTAAGCAATGCTGGACCGGAGAAAATTATGTAC TTCATCACTTTGGTTCTTGAAAATCTCGCACTTTCTTCAGATGATAATGAAGATCTTATTTACTGCGTGAAGGAATGGAAACATGCACTAAGTATGTCAA ATAGCAAAAGTGATCACTGGGCATTATATTCAAAATCAGTCCTTGACAGAACTCGCCTTGCCCTTGCTAGCAAGGCAGAATGGTACCACCAGGTTTTGCA ACCATCAGCGGAGTATCTTGGATCACTGCTTGGAGTGGACCAGTGGGCTGTGAACATATTCACTGAAGAAATTATCCGTGCTGGATCAGCTGCGGCATTA TCTGTACTTCTTAATCGACTTGATCCGGTTCTTCGGCAGACTGCTCATCTTGGAAGCTGGCAGGTTATTAGCCCAGTTGAAGCTGTTGGATATGTTGTTG CCGTGGATGAGTTGCTCACTGTGCAGAATAAAACTTACAATCTCCCAACAATCTTAGTAGCAAAACGAGTAAAAGGAGAAGAAGAAATTCCAGATGGTGC AGTTGCTTTGCTGACGCCTGACATGCCTGACGTACTATCTCATGTTTCTGTGCGAGCAAGAAATAGCAAGGTTTGCTTTGCTACATGCTTTGATCCCGAT ATTCTGGCCAACCTTCAAGCATATGAAGGGAAATTGTTGCGTCTGAAACCGACATCAGCAGATATAGTTTATAGTGAACTTACGGAGGGTGAACTAGCAG ATTCAAGTTCAACTAACTTAACAGAAGGCAGTCCTTCACCTATAAAGTTGGTCAGAAAGGAGTTCAGTGGCAGATATGCCATATCTTCTGAGGAGTTTAC CAGTGAAATGGTTGGTGCCAAATCACGCAACATCTCATATTTGAAAGGAAAAGTGCCGTCTTGGATTGGGATTCCTACATCAGTTGCTTTACCATTTGGA GTTTTTGAGAAGGTTCTATCTGAAGATTCGAATCAGGAAGTGGCCAATAAGTTGCAACTGTTGAAGAAAAACTTAGGAGAAGAGTTGAGTGCTCTCAGGG AGATTCGCCAAACAGTTTTACAGCTGACAGCACCACCGCAACTGGTCCAAGAGCTGAAGACCAAGATGCAAAGTTCTGAGATGCCATGGCCTGGTGATGA AGGTGAACAACGATGGGACCAAGCATGGATGGCTATAAAGAAGGTCTGGGCTTCAAAATGGAATGAGAGAGCATACTTCAGCGCGAGAAAAGTGAAGTTA GACCATGATTATCTCTGCATGGCCGTCCTGGTTCAGGAAGTAATAAATGCTGATTATGCATTTGTTATTCATACAACCAATCCATCTTCGGGGGATTCAT CCGAGATATATGCTGAGGTGGTGAAGGGACTTGGAGAAACTCTAGTCGGAGCTTATCCTGGCCGTGCATTGAGTTTTATCTGCAAGAAAAATGATTTAAA CAGTCCACAGGTGTTGGGTTATCCGAGCAAACCCATTGGGCTCTTTATAAGACGTTCTATCATCTTCCGATCCGACTCGAATGGTGAAGATCTAGAAGGT TATGCCGGTGCGGGCCTTTATGATAGTGTGCCAATGGATGAAGAAGAGAAGGTTGTGCTCGATTATTCATCTGATCCGTTGATCACCGATGAACAGTTCC GACGAAGAATCCTCTCTGGCATTGCTCGTGCAGGAAGTGCAATTGAAGAGCTGTATGGATCTCCTCAAGACATTGAAGGCGTGATACGTGATGGTAATGT CTACGTAGTTCAAACAAGACCCCAGGTGTAA
AA sequence Show only first row Show all	>Potri.010G044100.1 pacid=42797202 polypeptide=Potri.010G044100.1.p locus=Potri.010G044100 ID=Potri.010G044100.1.v4.1 annot-version=v4.1 MSNHSSIIGHYKVFNNQSLLRPTASEHRSSKLNSTGIPANSLFQSARRPLSSFYGNSLRVRKSKLGIAGARRSFIFTPRAVLAMDPPSEQLAGRFNLDGN IEMQVFVSHSSGSSIAQVNIQINYSSDSLLLHWGVVRDRKEKWVLPSLQPDGTKNYKNRALRSPFMESGSNSYINIAIDDPAIQAIEFLIVDEAQNKWFK NNGQNFYVELPTREKLTIPNVSVPEELVQIQSYLRWERNGKQMYTPEQEKEEYEAARFELMEKVARGTSIEDLRATLTNKNDIREIKEPSVSQIENNLPD DLVQLQAYMRWEKAGKPNFSPEQQQSEFEKAREELQAELGKGVSVDEIRKKISKGEIKTNVSKQLQNKRYFSTERIQRKGRDLAQLINRHSAKSVEDRAS KSVEEKASIEPKVLKAVELFAKEKEEHDGGAVLNKKIFKLADKELLVLVTKPGGKLKVRLATDFEEPVTLHWALSKKAGEWMEPPPTVLPPGSVALKEAA ETQLKNESSAKFSYQVQSFEIEIEEDIFVGLPFVLLSNGRWIKNNGSDFYIEFSRGSKHVQKDAGDGIGTARALLDKIAELESEAQKSFMHRFNIAADLM DKAKDAGELGLAGILVWMRFMATRQLIWNKNYNVKPREISKAQDRLTDLLQDIYASNPQHQELLRMIMSTVGRGGEGDVGQRIRDEILVIQRNNECKGGM MEEWHQKLHNNTSPDDVIICQALIDHIKSDFDISVYWKTLNENGITKERLLSYDRAIHSEPNFRRDQKDGLLRDLGNYMRTLKAVHSGADLESAITNCMG YRSEGQGFMVGVQINPIPGLPSGFPELLQFVLKHVEDKNVEALIEGLLEARQELRPLLFKSNNRLKDLLFLDIALDSTVRTAIERGYEELSNAGPEKIMY FITLVLENLALSSDDNEDLIYCVKEWKHALSMSNSKSDHWALYSKSVLDRTRLALASKAEWYHQVLQPSAEYLGSLLGVDQWAVNIFTEEIIRAGSAAAL SVLLNRLDPVLRQTAHLGSWQVISPVEAVGYVVAVDELLTVQNKTYNLPTILVAKRVKGEEEIPDGAVALLTPDMPDVLSHVSVRARNSKVCFATCFDPD ILANLQAYEGKLLRLKPTSADIVYSELTEGELADSSSTNLTEGSPSPIKLVRKEFSGRYAISSEEFTSEMVGAKSRNISYLKGKVPSWIGIPTSVALPFG VFEKVLSEDSNQEVANKLQLLKKNLGEELSALREIRQTVLQLTAPPQLVQELKTKMQSSEMPWPGDEGEQRWDQAWMAIKKVWASKWNERAYFSARKVKL DHDYLCMAVLVQEVINADYAFVIHTTNPSSGDSSEIYAEVVKGLGETLVGAYPGRALSFICKKNDLNSPQVLGYPSKPIGLFIRRSIIFRSDSNGEDLEG YAGAGLYDSVPMDEEEKVVLDYSSDPLITDEQFRRRILSGIARAGSAIEELYGSPQDIEGVIRDGNVYVVQTRPQV

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G10760		GWD1, GWD, SOP1...	STARCH EXCESS 1, Pyruvate phos...		Potri.010G044100 [exp]	0	1
AT5G26570		ATGWD3, OK1, PW...	PHOSPHOGLUCAN WATER DIKINASE, ...		Potri.014G147900 [exp]	1.41	0.8837
AT3G46970		ATPHS2, PHS2	Arabidopsis thaliana alpha-glu...		Potri.009G041800 [exp]	7.48	0.8950
AT2G40840		DPE2	disproportionating enzyme 2 (....		Potri.016G028900 [exp]	8.30	0.8680
AT1G78580		ATTPS1	TREHALOSE-6-PHOSPHATE SYNTHASE...		Potri.011G103900 [exp]	17.32	0.8567
AT5G42900		COR27	cold regulated gene 27 (.1.2.3...		Potri.009G101400 [exp]	21.74	0.7921
AT1G29740			Leucine-rich repeat transmembr...		Potri.011G072816 [exp]	23.51	0.8375
AT4G25960		ABCB2, PGP2	ATP-binding cassette B2, P-gly...		Potri.001G139600 [exp]	29.34	0.8133
AT5G23850			Arabidopsis thaliana protein o...		Potri.015G144400 [exp]	31.40	0.7809
AT3G05950			RmlC-like cupins superfamily p...		Potri.013G051700 [exp]	32.63	0.7246
AT4G14605			Mitochondrial transcription te...		Potri.017G067600 [exp]	33.68	0.8409

Compare expression of checked genes

Potri.010G044100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.