Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G70560 504 / 4e-179 CKRC1, WEI8, TAA1, sav3 WEAK ETHYLENE INSENSITIVE 8, SHADE AVOIDANCE 3, cytokinin induced root curling 1, tryptophan aminotransferase of Arabidopsis 1 (.1) AT1G23320 468 / 2e-165 TAR1 tryptophan aminotransferase related 1 (.1) AT4G24670 413 / 1e-142 TAR2 tryptophan aminotransferase related 2 (.1.2) AT1G34060 278 / 1e-89 Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1) AT1G34040 275 / 2e-88 ATMEPCT Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G187800 [exp] 703 / 0 AT1G70560 477 / 1e-168 WEAK ETHYLENE INSENSITIVE 8, SHADE AVOIDANCE 3, cytokinin induced root curling 1, tryptophan aminotransferase of Arabidopsis 1 (.1) Potri.T125108 [exp] 419 / 7e-145 AT4G24670 487 / 7e-171 tryptophan aminotransferase related 2 (.1.2) Potri.012G083300 [exp] 419 / 1e-144 AT4G24670 489 / 1e-171 tryptophan aminotransferase related 2 (.1.2) Potri.002G063800 [exp] 273 / 7e-88 AT1G34060 472 / 1e-164 Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1) Potri.002G064000 [exp] 269 / 4e-86 AT1G34060 514 / 0.0 Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1) Potri.013G113900 [exp] 45 / 9e-05 AT5G10330 612 / 0.0 HISTIDINE BIOSYNTHESIS 6A, EMBRYO DEFECTIVE 2196, histidinol phosphate aminotransferase 1 (.1.2.3)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036846 [exp] 462 / 9e-163 AT1G70560 415 / 4e-144 WEAK ETHYLENE INSENSITIVE 8, SHADE AVOIDANCE 3, cytokinin induced root curling 1, tryptophan aminotransferase of Arabidopsis 1 (.1) Lus10006199 [exp] 455 / 4e-160 AT1G70560 405 / 6e-141 WEAK ETHYLENE INSENSITIVE 8, SHADE AVOIDANCE 3, cytokinin induced root curling 1, tryptophan aminotransferase of Arabidopsis 1 (.1) Lus10039944 [exp] 416 / 5e-144 AT4G24670 489 / 5e-172 tryptophan aminotransferase related 2 (.1.2) Lus10027678 [exp] 402 / 9e-140 AT4G24670 449 / 7e-158 tryptophan aminotransferase related 2 (.1.2) Lus10018088 [exp] 347 / 2e-112 AT1G60780 632 / 0.0 HAPLESS 13, Clathrin adaptor complexes medium subunit family protein (.1) Lus10028695 [exp] 271 / 2e-86 AT1G34060 474 / 4e-165 Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1) Lus10007085 [exp] 256 / 1e-80 AT1G34060 456 / 5e-158 Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1) Lus10042084 [exp] 0 / 1 AT4G24670 190 / 5e-60 tryptophan aminotransferase related 2 (.1.2) Lus10042085 [exp] 0 / 1 ND 43 / 2e-08
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0061 [poplar] [flax] PLP_aminotran PF04864 [poplar] [flax] Alliinase_C Allinase
Representative CDS sequence Show only first row Show all	>Potri.010G044500.1 pacid=42797668 polypeptide=Potri.010G044500.1.p locus=Potri.010G044500 ID=Potri.010G044500.1.v4.1 annot-version=v4.1 ATGGGCGGTTTAGAGAATGGAGCAACCAATAACCAAAACTCTTCTCCGACGACAACTAAGCCCACAAAGACAAGTCTCTCGCCGGATTCCATGATCAATC TAGATCAGGGAGATCCAACGTTATTCGAGCCATACTGGAGGAAAATGGGAGACAAGTGCACGTTGGTGATTGAAGGGTGTGATTTGATGAGCTATTTCAG TGATATTAGCAACATTTGCTGGTTTTTGCAGCCACAACTTGGTGATGCCATAAAGCGACTGCATCGTGTTGTTGGAAATGCAGTAACAGAGGATCGCCAC GTCGTGGTTGGGACAGGTTCAACACAGCTCTTAATGGCTGCTCTGTATGCTCTCTCTTCTCCCGCTGATCGCCACCCCGTCAGTCTTGTAGCCGCCGCTC CTTTTTACTCGGGATATAAAGATCAGGCAGAATTCCTGCGTTCAGGACTCTATAAATGGGAGGGAGATGCACACACCTTTGAGAAGGATGGACCTTATAT TGAGGTCGTGACCTCGCCAAATAATCCTGATGGTGCTATGCGAGAAGCTGTGGTGAACCGTGGGGAAGGGAAGCTTGTCTATGACCTTGCCTACTACTGG CCACAATACACGCCTATCACTCAACCCTTGGATCTTGATATTATGCTGTTCACATTTTCCAAATGCACTGGACATGCTGGTTCCCGGATTGGCTGGGCAC TTGTTAAGGATAAAGAGGTAGCTAGAAAGATGACTGAATACATGCAGATCAGTTCCATCGGTGTATCTAAAGAATCTCAGATTCGAGCTGCAAAGATTCT TGGAGTGCTTGGCGAAGGTTGTAGGACTGCTGATTCAGAGAACTTCTTTGAGTATAGCCATAGCATTCTGAAAGAAAGGTGGGAGAGATTGCGAAATGTT GTCAAGAACAGCAGAGTCTTCAGTCTGCCAAAGTACCCACGAGATTACTGCAACTTCACTGGAAAGTACATGGATTCAAGTCCTGCTTTTGCATGGTTGC ACAGCAAGGAGGATATAGACTGGGAGAGTCGTTTAAGAGAGCATAAGATAATAGCAAGAAGTGGGGAGCGGTTTGGGGCTAGTCCAAAGTATGTCAGAAT AAGCATGTTTAGTCCACCAGAAGCCTTTAACCTTTTCTTGGAGAGGTTATCAGCAATCATCGACAATACCACTGGAAATGTAGTGACTTGA
AA sequence Show only first row Show all	>Potri.010G044500.1 pacid=42797668 polypeptide=Potri.010G044500.1.p locus=Potri.010G044500 ID=Potri.010G044500.1.v4.1 annot-version=v4.1 MGGLENGATNNQNSSPTTTKPTKTSLSPDSMINLDQGDPTLFEPYWRKMGDKCTLVIEGCDLMSYFSDISNICWFLQPQLGDAIKRLHRVVGNAVTEDRH VVVGTGSTQLLMAALYALSSPADRHPVSLVAAAPFYSGYKDQAEFLRSGLYKWEGDAHTFEKDGPYIEVVTSPNNPDGAMREAVVNRGEGKLVYDLAYYW PQYTPITQPLDLDIMLFTFSKCTGHAGSRIGWALVKDKEVARKMTEYMQISSIGVSKESQIRAAKILGVLGEGCRTADSENFFEYSHSILKERWERLRNV VKNSRVFSLPKYPRDYCNFTGKYMDSSPAFAWLHSKEDIDWESRLREHKIIARSGERFGASPKYVRISMFSPPEAFNLFLERLSAIIDNTTGNVVT

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G70560		CKRC1, WEI8, TA...	WEAK ETHYLENE INSENSITIVE 8, S...		Potri.010G044500 [exp]	0	1
AT4G18380			F-box family protein (.1.2)		Potri.003G203500 [exp]	2.23	0.9333
AT2G46570		LAC6	laccase 6 (.1)		Potri.014G100600 [exp]	2.44	0.9471
AT5G66390			Peroxidase superfamily protein...		Potri.007G019300 [exp]	4.00	0.9428
					Potri.012G028432 [exp]	4.24	0.9467
AT1G69630			F-box/RNI-like superfamily pro...		Potri.013G146800 [exp]	5.83	0.8770
AT1G68510	AS2	LBD42	LOB domain-containing protein ...		Potri.008G120600 [exp]	7.34	0.9285
AT5G07050			nodulin MtN21 /EamA-like trans...		Potri.012G007700 [exp]	9.48	0.9068
AT5G20810			SAUR-like auxin-responsive pro...		Potri.006G137200 [exp]	9.48	0.8592	SAUR46
AT1G66240		ATX1, ATATX1	homolog of anti-oxidant 1 (.1....		Potri.008G023800 [exp]	9.74	0.8374
AT5G53550		ATYSL3, YSL3	YELLOW STRIPE like 3 (.1.2)		Potri.012G027800 [exp]	9.94	0.8926

Compare expression of checked genes

Potri.010G044500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.