Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G58400 114 / 6e-27 Disease resistance protein (CC-NBS-LRR class) family (.1) AT3G07040 107 / 1e-24 RPS3, RPM1 RESISTANCE TO PSEUDOMONAS SYRINGAE 3, RESISTANCE TO P. SYRINGAE PV MACULICOLA 1, NB-ARC domain-containing disease resistance protein (.1) AT1G59780 105 / 6e-24 NB-ARC domain-containing disease resistance protein (.1) AT5G35450 100 / 2e-22 Disease resistance protein (CC-NBS-LRR class) family (.1) AT5G43470 96 / 5e-21 HRT, RCY1, RPP8 RECOGNITION OF PERONOSPORA PARASITICA 8, RESISTANT TO CMV\(Y\) 1, HYPERSENSITIVE RESPONSE TO TCV, Disease resistance protein (CC-NBS-LRR class) family (.1), Disease resistance protein (CC-NBS-LRR class) family (.2) AT5G48620 94 / 4e-20 Disease resistance protein (CC-NBS-LRR class) family (.1) AT1G59620 90 / 4e-19 CW9 Disease resistance protein (CC-NBS-LRR class) family (.1) AT1G58390 80 / 1e-15 Disease resistance protein (CC-NBS-LRR class) family (.1) AT1G53350 77 / 1e-14 Disease resistance protein (CC-NBS-LRR class) family (.1) AT1G59218 70 / 2e-12 Disease resistance protein (CC-NBS-LRR class) family (.1), Disease resistance protein (CC-NBS-LRR class) family (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G187700 [exp] 579 / 0 AT3G07040 0 / 1 RESISTANCE TO PSEUDOMONAS SYRINGAE 3, RESISTANCE TO P. SYRINGAE PV MACULICOLA 1, NB-ARC domain-containing disease resistance protein (.1) Potri.012G083700 [exp] 292 / 1e-94 AT1G58400 108 / 4e-25 Disease resistance protein (CC-NBS-LRR class) family (.1) Potri.001G134500 [exp] 151 / 3e-39 AT3G07040 422 / 1e-132 RESISTANCE TO PSEUDOMONAS SYRINGAE 3, RESISTANCE TO P. SYRINGAE PV MACULICOLA 1, NB-ARC domain-containing disease resistance protein (.1) Potri.002G216800 [exp] 138 / 4e-35 AT3G07040 573 / 0.0 RESISTANCE TO PSEUDOMONAS SYRINGAE 3, RESISTANCE TO P. SYRINGAE PV MACULICOLA 1, NB-ARC domain-containing disease resistance protein (.1) Potri.003G098900 [exp] 132 / 2e-33 AT3G07040 290 / 1e-87 RESISTANCE TO PSEUDOMONAS SYRINGAE 3, RESISTANCE TO P. SYRINGAE PV MACULICOLA 1, NB-ARC domain-containing disease resistance protein (.1) Potri.001G134300 [exp] 133 / 4e-33 AT3G07040 487 / 2e-157 RESISTANCE TO PSEUDOMONAS SYRINGAE 3, RESISTANCE TO P. SYRINGAE PV MACULICOLA 1, NB-ARC domain-containing disease resistance protein (.1) Potri.001G134475 [exp] 132 / 4e-33 AT3G07040 413 / 1e-129 RESISTANCE TO PSEUDOMONAS SYRINGAE 3, RESISTANCE TO P. SYRINGAE PV MACULICOLA 1, NB-ARC domain-containing disease resistance protein (.1) Potri.017G106500 [exp] 132 / 4e-33 AT3G07040 224 / 3e-61 RESISTANCE TO PSEUDOMONAS SYRINGAE 3, RESISTANCE TO P. SYRINGAE PV MACULICOLA 1, NB-ARC domain-containing disease resistance protein (.1) Potri.001G134450 [exp] 132 / 5e-33 AT3G07040 488 / 1e-157 RESISTANCE TO PSEUDOMONAS SYRINGAE 3, RESISTANCE TO P. SYRINGAE PV MACULICOLA 1, NB-ARC domain-containing disease resistance protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028075 [exp] 290 / 5e-91 AT3G07040 168 / 1e-43 RESISTANCE TO PSEUDOMONAS SYRINGAE 3, RESISTANCE TO P. SYRINGAE PV MACULICOLA 1, NB-ARC domain-containing disease resistance protein (.1) Lus10025625 [exp] 212 / 1e-65 AT5G43470 101 / 6e-24 RECOGNITION OF PERONOSPORA PARASITICA 8, RESISTANT TO CMV\(Y\) 1, HYPERSENSITIVE RESPONSE TO TCV, Disease resistance protein (CC-NBS-LRR class) family (.1), Disease resistance protein (CC-NBS-LRR class) family (.2) Lus10028076 [exp] 200 / 9e-58 AT1G58848 147 / 6e-37 Disease resistance protein (CC-NBS-LRR class) family (.1), Disease resistance protein (CC-NBS-LRR class) family (.2) Lus10038983 [exp] 125 / 1e-30 AT3G07040 468 / 5e-150 RESISTANCE TO PSEUDOMONAS SYRINGAE 3, RESISTANCE TO P. SYRINGAE PV MACULICOLA 1, NB-ARC domain-containing disease resistance protein (.1) Lus10027281 [exp] 124 / 5e-30 AT3G07040 459 / 5e-147 RESISTANCE TO PSEUDOMONAS SYRINGAE 3, RESISTANCE TO P. SYRINGAE PV MACULICOLA 1, NB-ARC domain-containing disease resistance protein (.1) Lus10020016 [exp] 111 / 5e-26 AT3G07040 563 / 0.0 RESISTANCE TO PSEUDOMONAS SYRINGAE 3, RESISTANCE TO P. SYRINGAE PV MACULICOLA 1, NB-ARC domain-containing disease resistance protein (.1) Lus10014922 [exp] 107 / 1e-24 AT3G07040 523 / 1e-171 RESISTANCE TO PSEUDOMONAS SYRINGAE 3, RESISTANCE TO P. SYRINGAE PV MACULICOLA 1, NB-ARC domain-containing disease resistance protein (.1) Lus10041243 [exp] 98 / 2e-21 AT3G07040 526 / 1e-172 RESISTANCE TO PSEUDOMONAS SYRINGAE 3, RESISTANCE TO P. SYRINGAE PV MACULICOLA 1, NB-ARC domain-containing disease resistance protein (.1) Lus10002945 [exp] 97 / 2e-21 AT3G07040 580 / 0.0 RESISTANCE TO PSEUDOMONAS SYRINGAE 3, RESISTANCE TO P. SYRINGAE PV MACULICOLA 1, NB-ARC domain-containing disease resistance protein (.1) Lus10014712 [exp] 94 / 3e-20 AT3G07040 492 / 3e-159 RESISTANCE TO PSEUDOMONAS SYRINGAE 3, RESISTANCE TO P. SYRINGAE PV MACULICOLA 1, NB-ARC domain-containing disease resistance protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.010G044601.1 pacid=42797414 polypeptide=Potri.010G044601.1.p locus=Potri.010G044601 ID=Potri.010G044601.1.v4.1 annot-version=v4.1 ATGGAGGATGTAGCAGAAAATGTTCTCAAGGAATTGATTGACCTAGGAATGCTTCAAGTTCAACAAGTACAACAAGAGACTGAAGTAAAAGTCCCTGCCT CGTATGTCCAGTTATGTATTCTTAAATTGGAGAAACAAGATTTTGTTTCTAAAACTGCAAACTCACCTGTGCGTTTACGGATCAGAGATGATGGAAGGGA TATCTATCCTAACGTTGAAGGCCTTCTAATTCAATCTCTATTTATTATTAGTGAACGCCGTGATTCTTCTTTTGGTGCTCCCCGAGGCCTTTCACGGGCC TATATGAGAAATGTTTGTGGTATGCACTTTCTGTTGGTGCTGGATTTGCGTGGCTTGATAGAGTGCTTACCTGATGAATTGGGAGACTTGATTCACCTGA GGTACTTGGGCTTGTTTAACTCAAATCTAGATGAGCTTCCAGGGACTTTAGGGAATCTTAAAAGACTGCAAACTTTGGATATAAGGATGTGTCGACATCT ACGCAAACTACCAATAGAAATTCTGCATATCCAACAGTTGAGACACCTTCTAATGTCCGACAGCATTAATGATTGTGAAATTAGAGTTCCGAAGGGCGTT GGAACATTGGTAAGTCTTCACACTTTGTCTGGTATTTATGGTGGAGATGATATTGCCATAGAATTGATTGCCTTAACCCAGCTACGAGAGCTCGGCGTTA AGCGTGTGACTGACGATCATGCCAGTGAGCTGTTTGCAGCTATAAAGAAGATGGAAAACCTCACATCCCTATCGCTAGAAGCAGAGCGCAACTACTTTGA AGATACAAGTTTCTCTATTTTTGCTGAATTGGATGCGTTTTCTCCCCCGCCACTTCTTCAAGAGTTTTTCTTACTTGGGGGATTAATTGAGATGCCCGTT TGGTTTGCCTCCATGGAAAACCTCACCCGCCTATCATTATTCTATTCTTATCTGTCGGAGAATCCAACTTCAGTCCTTCAGTTGCTTCCCAAATTGAAGC ATCTTCAACTCTGGGAAGCCTACAAGGCAAGGCACATTGGTAAAGAATTTTGCAATGCAGGTGGTTTCCCTGTGCTGGAAACTCTCACAATTGCTTCTGA GTTCCTGGCGGAATGGACTGAAATTGAAACGGGAGCTTTTCCACGTTTAAGATATCTTTGTTTTCGTCGCTGTAGAAACTTGATTTTTCTTCCTGAAGGG TTGCAGAACATTTCCACACTTCAAGATCTGTGTTTCTTCCCCTGGAATCCAGACCTTAAAAGGCGATTGATGGGTGAAGAGAATTACAAGATCAAGCATG TCCCAAATATTCGGGGGTTTGAGAACCGTTGA
AA sequence Show only first row Show all	>Potri.010G044601.1 pacid=42797414 polypeptide=Potri.010G044601.1.p locus=Potri.010G044601 ID=Potri.010G044601.1.v4.1 annot-version=v4.1 MEDVAENVLKELIDLGMLQVQQVQQETEVKVPASYVQLCILKLEKQDFVSKTANSPVRLRIRDDGRDIYPNVEGLLIQSLFIISERRDSSFGAPRGLSRA YMRNVCGMHFLLVLDLRGLIECLPDELGDLIHLRYLGLFNSNLDELPGTLGNLKRLQTLDIRMCRHLRKLPIEILHIQQLRHLLMSDSINDCEIRVPKGV GTLVSLHTLSGIYGGDDIAIELIALTQLRELGVKRVTDDHASELFAAIKKMENLTSLSLEAERNYFEDTSFSIFAELDAFSPPPLLQEFFLLGGLIEMPV WFASMENLTRLSLFYSYLSENPTSVLQLLPKLKHLQLWEAYKARHIGKEFCNAGGFPVLETLTIASEFLAEWTEIETGAFPRLRYLCFRRCRNLIFLPEG LQNISTLQDLCFFPWNPDLKRRLMGEENYKIKHVPNIRGFENR

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G58400			Disease resistance protein (CC...		Potri.010G044601 [exp]	0	1
AT5G01750			Protein of unknown function (D...		Potri.016G131100 [exp]	10.09	0.9382
AT4G27300			S-locus lectin protein kinase ...		Potri.011G126251 [exp]	10.95	0.9136
AT5G01750			Protein of unknown function (D...		Potri.016G131500 [exp]	12.72	0.9259
AT5G17680			disease resistance protein (TI...		Potri.019G070565 [exp]	18.02	0.9246
AT1G11530		ATCXXS1	C-terminal cysteine residue is...		Potri.004G031700 [exp]	21.77	0.8829	PtrcCXXS1
AT5G14930		GENE101, SAG101	senescence-associated gene 101...		Potri.001G291033 [exp]	23.17	0.8796
					Potri.006G271901 [exp]	28.77	0.9318
AT5G36930			Disease resistance protein (TI...		Potri.011G015050 [exp]	34.74	0.9203
AT5G22355			Cysteine/Histidine-rich C1 dom...		Potri.016G044800 [exp]	40.31	0.8872
AT3G14470			NB-ARC domain-containing disea...		Potri.006G275800 [exp]	40.39	0.9276

Compare expression of checked genes

Potri.010G044601 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.