Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G60780 834 / 0 HAP13 HAPLESS 13, Clathrin adaptor complexes medium subunit family protein (.1) AT1G10730 789 / 0 Clathrin adaptor complexes medium subunit family protein (.1) AT5G46630 372 / 4e-126 Clathrin adaptor complexes medium subunit family protein (.1.2) AT4G24550 265 / 4e-84 Clathrin adaptor complexes medium subunit family protein (.1.2.3) AT1G56590 172 / 4e-49 ZIP4 ZIG SUPPRESSOR 4, Clathrin adaptor complexes medium subunit family protein (.1) AT4G35410 43 / 0.0001 Clathrin adaptor complex small chain family protein (.1.2) AT2G17380 41 / 0.0005 AP19 associated protein 19 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G187600 [exp] 865 / 0 AT1G60780 831 / 0.0 HAPLESS 13, Clathrin adaptor complexes medium subunit family protein (.1) Potri.003G090800 [exp] 364 / 6e-123 AT5G46630 831 / 0.0 Clathrin adaptor complexes medium subunit family protein (.1.2) Potri.001G143800 [exp] 360 / 2e-121 AT5G46630 816 / 0.0 Clathrin adaptor complexes medium subunit family protein (.1.2) Potri.002G105100 [exp] 254 / 3e-80 AT4G24550 817 / 0.0 Clathrin adaptor complexes medium subunit family protein (.1.2.3) Potri.005G010600 [exp] 174 / 1e-49 AT1G56590 716 / 0.0 ZIG SUPPRESSOR 4, Clathrin adaptor complexes medium subunit family protein (.1) Potri.013G006400 [exp] 171 / 1e-48 AT1G56590 712 / 0.0 ZIG SUPPRESSOR 4, Clathrin adaptor complexes medium subunit family protein (.1) Potri.002G105050 [exp] 79 / 3e-17 AT4G24550 299 / 9e-102 Clathrin adaptor complexes medium subunit family protein (.1.2.3) Potri.012G052000 [exp] 46 / 7e-06 AT2G17380 307 / 6e-109 associated protein 19 (.1) Potri.014G079000 [exp] 43 / 0.0001 AT4G35410 291 / 1e-102 Clathrin adaptor complex small chain family protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004626 [exp] 854 / 0 AT1G60780 827 / 0.0 HAPLESS 13, Clathrin adaptor complexes medium subunit family protein (.1) Lus10026688 [exp] 840 / 0 AT1G60780 813 / 0.0 HAPLESS 13, Clathrin adaptor complexes medium subunit family protein (.1) Lus10042083 [exp] 780 / 0 AT1G60780 779 / 0.0 HAPLESS 13, Clathrin adaptor complexes medium subunit family protein (.1) Lus10018088 [exp] 636 / 0 AT1G60780 632 / 0.0 HAPLESS 13, Clathrin adaptor complexes medium subunit family protein (.1) Lus10000107 [exp] 568 / 0 AT1G60780 572 / 0.0 HAPLESS 13, Clathrin adaptor complexes medium subunit family protein (.1) Lus10040086 [exp] 357 / 4e-120 AT5G46630 853 / 0.0 Clathrin adaptor complexes medium subunit family protein (.1.2) Lus10030961 [exp] 341 / 7e-114 AT5G46630 837 / 0.0 Clathrin adaptor complexes medium subunit family protein (.1.2) Lus10024548 [exp] 249 / 8e-78 AT4G24550 804 / 0.0 Clathrin adaptor complexes medium subunit family protein (.1.2.3) Lus10003537 [exp] 238 / 2e-73 AT4G24550 785 / 0.0 Clathrin adaptor complexes medium subunit family protein (.1.2.3) Lus10031432 [exp] 178 / 2e-51 AT1G56590 705 / 0.0 ZIG SUPPRESSOR 4, Clathrin adaptor complexes medium subunit family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0448 [poplar] [flax] Cargo_bd_muHD PF00928 [poplar] [flax] Adap_comp_sub Adaptor complexes medium subunit family CL0431 [poplar] [flax] PF PF01217 [poplar] [flax] Clat_adaptor_s Clathrin adaptor complex small chain
Representative CDS sequence Show only first row Show all	>Potri.010G044700.2 pacid=42798690 polypeptide=Potri.010G044700.2.p locus=Potri.010G044700 ID=Potri.010G044700.2.v4.1 annot-version=v4.1 ATGGCCGGGGCAGCCTCCGCACTGTTTCTATTAGACATAAAGGGGCGCGTTCTTGTGTGGCGCGACTACCGTGGCGATGTCTCTGCCGTTCAGGCCGAGC GCTTCTTCACCAAGCTCATCGAGAAGGAGGGAGATCCGCAATCTCAAGATCCAGTAGTGTATGATAATGGAGTCTCTTACATGTACATACAACATAGCAA TGTTTATCTAATGACCGCATCAAGGCAGAATTGTAATGCTGCCAGCCTCCTCTCCTTTCTCCACCGCGTTGTTGATGTTTTTAAGCATTATTTTGAAGAA TTAGAAGAGGAATCACTCAGGGATAACTTTGTGGTAGTGTACGAGTTACTTGATGAAATGATGGACTTTGGTTACCCTCAGTATACCGAAGCAAAAATTC TTAGCGAGTTTATCAAGACTAATGCCTACAGGATGGAAACTTCACAGAGGCCTCCCATGGCTGTCACTAATGCAGTGTCCTGGCGCAGCGAAGGGATAAA TTACAAGAAGAATGAAGTTTTCTTGGATGTTGTTGAGAGTGTAAATATACTTGTCAACAGCAATGGACAAGTGATTAGGTCTGATGTTGTGGGGGCTTTA AAAATGAGAACGTATCTAAGCGGCATGCCTGAGTGTAAGCTTGGCCTAAATGATAGAGTTTTATTGGAGGCCCAAGGACGGGCAACAAAGGGAAAGGCCA TTGATTTGGAGGACATCAAATTTCATCAGTGTGTGCGTTTGGCTCGATTTGAAAATGATCGGACAATATCATTTATACCACCTGATGGGGCTTTTGATCT CATGACATATAGACTCAGCACTCAGGTAAAGCCTCTGATTTGGGTAGAAGCTCAAGTTGAAAGGCATTCAAGAAGTCGTGTTGAGATAATGGTAAAGGCT AGGAGCCAGTTCAAGGAGCGTAGTACAGCAACAAATGTTGAGATTGAGTTGCCGGTGTCAGTCGATGTTTCCAATCCTAATATTCGGACGTCAATGGGGT CTGCATCATATGCACCTGAAAATGATGCATTATTGTGGAAAATTAAATCTTTTCCTGGTGGGAAGGAGTACATGTTGAGGGCAGAGTTCAGTCTTCCCAG TATAACTGCCGAAGAAGCAACTCCTGAGAGAAAAGCTCCTATACGAGTGAAGTTTGAAATACCATATTTTACTGTTTCAGGAATACAGGTTCGATACCTG AAGATTATTGAGAAAAGTGGTTATCAGGCCCTCCCATGGGTGAGATACATAACAATGGCCGGCGAGTATGAGCTTAGGCTTATCTAA
AA sequence Show only first row Show all	>Potri.010G044700.2 pacid=42798690 polypeptide=Potri.010G044700.2.p locus=Potri.010G044700 ID=Potri.010G044700.2.v4.1 annot-version=v4.1 MAGAASALFLLDIKGRVLVWRDYRGDVSAVQAERFFTKLIEKEGDPQSQDPVVYDNGVSYMYIQHSNVYLMTASRQNCNAASLLSFLHRVVDVFKHYFEE LEEESLRDNFVVVYELLDEMMDFGYPQYTEAKILSEFIKTNAYRMETSQRPPMAVTNAVSWRSEGINYKKNEVFLDVVESVNILVNSNGQVIRSDVVGAL KMRTYLSGMPECKLGLNDRVLLEAQGRATKGKAIDLEDIKFHQCVRLARFENDRTISFIPPDGAFDLMTYRLSTQVKPLIWVEAQVERHSRSRVEIMVKA RSQFKERSTATNVEIELPVSVDVSNPNIRTSMGSASYAPENDALLWKIKSFPGGKEYMLRAEFSLPSITAEEATPERKAPIRVKFEIPYFTVSGIQVRYL KIIEKSGYQALPWVRYITMAGEYELRLI

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G60780		HAP13	HAPLESS 13, Clathrin adaptor c...		Potri.010G044700 [exp]	0	1
AT3G05420		ACBP4	acyl-CoA binding protein 4 (.1...		Potri.013G018800 [exp]	2.00	0.9695
AT5G05010			clathrin adaptor complexes med...		Potri.012G125500 [exp]	2.23	0.9698
AT4G33945			ARM repeat superfamily protein...		Potri.004G144100 [exp]	3.16	0.9628
AT1G53290			Galactosyltransferase family p...		Potri.011G111700 [exp]	3.87	0.9664
AT1G71270		ATVPS52, TTD8, ...	T-DNA TRANSMISSION DEFECT 8, P...		Potri.006G027100 [exp]	4.00	0.9608	Pt-POK.1
AT1G48880		TBL7	TRICHOME BIREFRINGENCE-LIKE 7 ...		Potri.005G060800 [exp]	5.29	0.9658
AT1G60070			Adaptor protein complex AP-1, ...		Potri.016G104700 [exp]	5.83	0.9533
AT5G36290			Uncharacterized protein family...		Potri.013G086700 [exp]	5.91	0.9615
AT5G41950			Tetratricopeptide repeat (TPR)...		Potri.003G146200 [exp]	6.00	0.9623
AT2G35190		NSPN11, ATNPSN1...	novel plant snare 11 (.1)		Potri.003G085200 [exp]	6.00	0.9576	Pt-NPSN11.1

Compare expression of checked genes

Potri.010G044700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.