Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G10710 202 / 1e-62 PHS1 poor homologous synapsis 1 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004624 [exp] 191 / 2e-58 AT1G10710 170 / 4e-50 poor homologous synapsis 1 (.1.2) Lus10026691 [exp] 135 / 8e-39 AT1G10710 133 / 4e-38 poor homologous synapsis 1 (.1.2) Lus10018084 [exp] 102 / 3e-25 AT1G10710 88 / 3e-20 poor homologous synapsis 1 (.1.2) Lus10042079 [exp] 92 / 4e-22 AT1G10710 89 / 3e-21 poor homologous synapsis 1 (.1.2) Lus10026690 [exp] 89 / 2e-20 AT1G10710 57 / 2e-09 poor homologous synapsis 1 (.1.2)
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.010G044800.1 pacid=42799363 polypeptide=Potri.010G044800.1.p locus=Potri.010G044800 ID=Potri.010G044800.1.v4.1 annot-version=v4.1 ATGAAAAACATGGAGGCAGGATCTTCTCTAGCAATAATAGGTCATGAAGGTGGTGAAGAAGAGCAAAGAGTGCCCTCCGCCATTCCTACAGACCAATGGC AGGTGACTTTCTCTCGATTCATCAACTATCCTTCTCTGCCTTCCACGTGTCCGTCTCTCATTCCCCTCCCTCACAATCGGAAGTGCCGCCCAACCCGAGG CACCTGGATCTCCTCCGTCTCTGCTACCGCCTCTCTCCAGCTCCTCAACTACCAATCCAACTCCAAAGACGCCATCCTCGGGCTCTCTTTAAACGGCACC GTCCTTGAAGAGCACTATGTTTGGAAGCTGCATTTCTCATGGCCTCAGGTTTCGTGCGTTTCTGGATATCCTTCAAGGGGCACCAGAGCCGTCTTTGTGA CCTTCAAGGATTCTCTTGACGAGATCCAGAAGTTTGGCTTTCGATTTTCAACTTTTTCAGAAGCAGAAGCGTTTATAAATGCTTTGAAGGTTATCCTGGA GGATCCAATTGAAACTGAACGTCTGGATAGCGACTTTCAATCAGCGATTTCGTCACAATCTGTGTTCATGCCTACTGATGGATACAAACCTAGAGCTTGG GTGGAGGAGGAATCGAGCACGATGGGTCCTGTTCAAGATTATTCTCCTCAACTTCAATTGAGTTGGAACAAGGAAGCTGAACAAGCATCATTGAGTACGG AAAAATCTCTGAATCACAACAATGAAGGAATTTCTCCAGTCATGCCTCCCAGCTTTACGTCATTACTGCTCGACTGCTGCTCTGAGGTCAAACAAGGCCA GCCAAGTTCATCTCATGCAATCGATCTCAAATCCCAAATTATGAAATACATGGAGGATTCTTCCTTCCAAGATATGCTATCGAAAGTGGAGAAAGTTATC AATGAACTTGGAGATGATCTGATGCTGTAA
AA sequence Show only first row Show all	>Potri.010G044800.1 pacid=42799363 polypeptide=Potri.010G044800.1.p locus=Potri.010G044800 ID=Potri.010G044800.1.v4.1 annot-version=v4.1 MKNMEAGSSLAIIGHEGGEEEQRVPSAIPTDQWQVTFSRFINYPSLPSTCPSLIPLPHNRKCRPTRGTWISSVSATASLQLLNYQSNSKDAILGLSLNGT VLEEHYVWKLHFSWPQVSCVSGYPSRGTRAVFVTFKDSLDEIQKFGFRFSTFSEAEAFINALKVILEDPIETERLDSDFQSAISSQSVFMPTDGYKPRAW VEEESSTMGPVQDYSPQLQLSWNKEAEQASLSTEKSLNHNNEGISPVMPPSFTSLLLDCCSEVKQGQPSSSHAIDLKSQIMKYMEDSSFQDMLSKVEKVI NELGDDLML

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G10710		PHS1	poor homologous synapsis 1 (.1...		Potri.010G044800 [exp]	0	1
AT5G62410		TTN3, ATSMC4, A...	TITAN 3, structural maintenanc...		Potri.003G108400 [exp]	9.11	0.8100	CPE902,Pt-SMC2.2
AT5G65360			Histone superfamily protein (....		Potri.003G207700 [exp]	14.38	0.7728
AT5G06920		FLA21	FASCICLIN-like arabinogalactan...		Potri.013G152200 [exp]	15.42	0.7501
AT1G08260		ESD7, EMB142, E...	TILTED 1, EARLY IN SHORT DAYS ...		Potri.004G185700 [exp]	17.20	0.7492
AT1G79950			RAD3-like DNA-binding helicase...		Potri.001G180200 [exp]	22.44	0.7482
AT4G14180		ATPRD1	putative recombination initiat...		Potri.002G232700 [exp]	24.28	0.7622
AT1G63470	AT-hook		AT hook motif DNA-binding fami...		Potri.001G104900 [exp]	30.59	0.7146
AT1G77720		PPK1	putative protein kinase 1 (.1)		Potri.002G087600 [exp]	42.66	0.7232
AT1G10120	bHLH	bHLH074, CIB4	basic helix-loop-helix (bHLH) ...		Potri.002G114700 [exp]	52.24	0.7110
AT1G03780		AtTPX2, TPX2	targeting protein for XKLP2 (....		Potri.007G138600 [exp]	52.44	0.7471

Compare expression of checked genes

Potri.010G044800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.