Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G10700 565 / 0 PRS3 phosphoribosyl pyrophosphate (PRPP) synthase 3 (.1) AT2G42910 492 / 5e-175 Phosphoribosyltransferase family protein (.1) AT2G35390 82 / 4e-17 Phosphoribosyltransferase family protein (.1.2.3) AT1G32380 78 / 2e-15 PRS2 phosphoribosyl pyrophosphate (PRPP) synthase 2 (.1) AT2G44530 77 / 3e-15 Phosphoribosyltransferase family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G059700 [exp] 504 / 4e-180 AT2G42910 575 / 0.0 Phosphoribosyltransferase family protein (.1) Potri.005G202100 [exp] 503 / 1e-179 AT2G42910 565 / 0.0 Phosphoribosyltransferase family protein (.1) Potri.001G145700 [exp] 82 / 7e-17 AT2G35390 657 / 0.0 Phosphoribosyltransferase family protein (.1.2.3) Potri.003G088400 [exp] 82 / 9e-17 AT2G35390 655 / 0.0 Phosphoribosyltransferase family protein (.1.2.3) Potri.014G179600 [exp] 81 / 2e-16 AT2G44530 628 / 0.0 Phosphoribosyltransferase family protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006202 [exp] 577 / 0 AT1G10700 577 / 0.0 phosphoribosyl pyrophosphate (PRPP) synthase 3 (.1) Lus10036849 [exp] 577 / 0 AT1G10700 577 / 0.0 phosphoribosyl pyrophosphate (PRPP) synthase 3 (.1) Lus10020768 [exp] 500 / 3e-178 AT2G42910 582 / 0.0 Phosphoribosyltransferase family protein (.1) Lus10007345 [exp] 498 / 1e-177 AT2G42910 579 / 0.0 Phosphoribosyltransferase family protein (.1) Lus10031395 [exp] 496 / 1e-176 AT2G42910 578 / 0.0 Phosphoribosyltransferase family protein (.1) Lus10010935 [exp] 495 / 4e-176 AT2G42910 572 / 0.0 Phosphoribosyltransferase family protein (.1) Lus10012074 [exp] 78 / 1e-15 AT2G44530 605 / 0.0 Phosphoribosyltransferase family protein (.1.2) Lus10040098 [exp] 75 / 2e-14 AT2G35390 639 / 0.0 Phosphoribosyltransferase family protein (.1.2.3) Lus10030948 [exp] 64 / 7e-11 AT2G35390 613 / 0.0 Phosphoribosyltransferase family protein (.1.2.3) Lus10027908 [exp] 55 / 6e-08 AT2G44530 555 / 0.0 Phosphoribosyltransferase family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0533 [poplar] [flax] PRTase-like PF00156 [poplar] [flax] Pribosyltran Phosphoribosyl transferase domain CL0533 [poplar] [flax] PRTase-like PF13793 [poplar] [flax] Pribosyltran_N N-terminal domain of ribose phosphate pyrophosphokinase
Representative CDS sequence Show only first row Show all	>Potri.010G045000.1 pacid=42797201 polypeptide=Potri.010G045000.1.p locus=Potri.010G045000 ID=Potri.010G045000.1.v4.1 annot-version=v4.1 ATGGCGGCAACACCACCACTCCAATCCTCCTCCTCCTCCTCCACCGCTTCACGCAAAAATCTTTCTTACTATAGTTACATCTATAACAACAAATGTCCCA AATTCCCTTCTCTCCTCTTCAAAACCAAATCACAGACTACTATTAGTATTAGGATTAGGTGCGACGCCCAAAATTGGAGTGCTGGGTATGTATCTGCGGC AACCAATCACCATCTTCACTCGATCCAAAACTCTTCTCCTTCTCCTTCCTCCTTTTCAATTCCCTCCGCCTCCTCCTCCTCATCGGAGTCCTCTCCTTCC AAAAGGGTTTGCCTTTTCTACTGCGCTGAAACCAAACCCTTAGCTCAACGAATCGCTGCCGAGTCCGATTCAATCGAGCTCCGCTCCATCTCTTGGAGGA CATTTGATGATGGGTTTCCGAATTTATTTATACCAAATGCACAAGGAATTAGGGGTCAGCATGTAGCCTTTCTGGCTTCTTTTAGTTCCCCCAAAGTAAT ATTTGAGCAGCTTTCAATTATATACGCTTTGCCCAAATTGTTCATTTCTTCCTTCACCCTCGTCCTTCCCTTTTTTCCCACTGGAACTTCGGAGCGTATG GAGGACGAAGGAGATGTTGCCACTGCCTTCACTCTTGCTAGGATCTTGTCCAATATACCAACTTCCAGGGGAGGTCCTACTAGCTTGGTCACTTTTGATA TCCATGCTCTTCAGGAGAGGTTCTACTTCGGAGATAATATTTTACCATGCTTTGAGAGTGGAATACCTTTGCTTAAAAATAGGCTTCAGGAGCTCCCTGA TTCTGACAAAATAGCAATTGCTTTTCCTGATGATGGTGCATGGAAACGATTTCATAAACAACTGCATCATTTCCCTACGATCATTTGTGCTAAAGTTCGG GAAGGTGACCAAAGAATTGTGCGTATCAAGGAGGGAGACCCTCGAGGACGTCATGTTGTTATTGTTGATGATTTGGTTCAGTCGGGTGGCACTCTGGTAG AATGTCAGAAAATATTGGCTAACCATGGAGCGGCAAAAATAAGTGCCTACGTGACTCATGGGATTTTTCCAAATAGATCGTGGGAGCGCTTTGAATCTGA TAATGGAGGCCACCCAGGGGCAGGGCTAACCTACTTCTGGATTACAGACTCATGCCCATTGACGGTGAAGGAAGTGATGAACAAACCGCCATTTGAAGTT CTAAGTCTTGCCGGTTCAATAGCAGCTGCCCTTCAAATCGGGCAGTTGTTCTAA
AA sequence Show only first row Show all	>Potri.010G045000.1 pacid=42797201 polypeptide=Potri.010G045000.1.p locus=Potri.010G045000 ID=Potri.010G045000.1.v4.1 annot-version=v4.1 MAATPPLQSSSSSSTASRKNLSYYSYIYNNKCPKFPSLLFKTKSQTTISIRIRCDAQNWSAGYVSAATNHHLHSIQNSSPSPSSFSIPSASSSSSESSPS KRVCLFYCAETKPLAQRIAAESDSIELRSISWRTFDDGFPNLFIPNAQGIRGQHVAFLASFSSPKVIFEQLSIIYALPKLFISSFTLVLPFFPTGTSERM EDEGDVATAFTLARILSNIPTSRGGPTSLVTFDIHALQERFYFGDNILPCFESGIPLLKNRLQELPDSDKIAIAFPDDGAWKRFHKQLHHFPTIICAKVR EGDQRIVRIKEGDPRGRHVVIVDDLVQSGGTLVECQKILANHGAAKISAYVTHGIFPNRSWERFESDNGGHPGAGLTYFWITDSCPLTVKEVMNKPPFEV LSLAGSIAAALQIGQLF

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G10700		PRS3	phosphoribosyl pyrophosphate (...		Potri.010G045000 [exp]	0	1
AT3G04490			unknown protein		Potri.019G019100 [exp]	4.58	0.8437
AT1G53490			RING/U-box superfamily protein...		Potri.001G383900 [exp]	5.19	0.7858
AT5G19660		ATSBT6.1 ,ATS1P	SITE-1 protease (.1)		Potri.018G081400 [exp]	10.67	0.7745
AT3G48860			unknown protein		Potri.015G104600 [exp]	11.13	0.7815
AT4G38120			ARM repeat superfamily protein...		Potri.001G454200 [exp]	15.16	0.7748
AT1G71820		SEC6	SEC6 (.1.2)		Potri.001G432820 [exp]	16.24	0.7719
AT4G12560		CPR1, CPR30	CONSTITUTIVE EXPRESSER OF PR G...		Potri.001G262900 [exp]	18.33	0.7009
AT3G51980			ARM repeat superfamily protein...		Potri.003G158701 [exp]	20.78	0.7254
AT5G45610		SUV2	SENSITIVE TO UV 2, protein dim...		Potri.003G098700 [exp]	25.09	0.7581
AT1G08190		ZIP2, ATVPS41, ...	ZIGZAG SUPPRESSOR 2, vacuolar ...		Potri.001G212700 [exp]	30.59	0.7529

Compare expression of checked genes

Potri.010G045000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.