Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G70580 895 / 0 GGT2, AOAT2 GLUTAMATE:GLYOXYLATE AMINOTRANSFERASE 2, alanine-2-oxoglutarate aminotransferase 2 (.1.2.3.4) AT1G23310 884 / 0 GGAT1, AOAT1, GGT1 GLUTAMATE:GLYOXYLATE AMINOTRANSFERASE 1, ALANINE-2-OXOGLUTARATE AMINOTRANSFERASE 1, glutamate:glyoxylate aminotransferase (.1.2) AT1G72330 478 / 2e-165 ALAAT2 alanine aminotransferase 2 (.1.2.3) AT1G17290 468 / 1e-161 ALAAT1 alanine aminotransferas (.1) AT2G20610 96 / 6e-21 RTY1, RTY, HLS3, ALF1, SUR1 SUPERROOT 1, ROOTY 1, ROOTY, HOOKLESS 3, ABERRANT LATERAL ROOT FORMATION 1, Tyrosine transaminase family protein (.1.2) AT5G51690 92 / 9e-20 ACS12 1-amino-cyclopropane-1-carboxylate synthase 12 (.1) AT4G28420 85 / 2e-17 Tyrosine transaminase family protein (.1.2) AT4G26200 84 / 3e-17 ACS7, ATACS7 1-amino-cyclopropane-1-carboxylate synthase 7 (.1) AT4G11280 84 / 6e-17 ATACS6, ACS6 1-aminocyclopropane-1-carboxylic acid (acc) synthase 6 (.1) AT2G24850 82 / 1e-16 TAT3 tyrosine aminotransferase 3 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G187400 [exp] 945 / 0 AT1G70580 895 / 0.0 GLUTAMATE:GLYOXYLATE AMINOTRANSFERASE 2, alanine-2-oxoglutarate aminotransferase 2 (.1.2.3.4) Potri.003G072600 [exp] 474 / 7e-164 AT1G72330 838 / 0.0 alanine aminotransferase 2 (.1.2.3) Potri.001G162800 [exp] 468 / 2e-162 AT1G17290 828 / 0.0 alanine aminotransferas (.1) Potri.006G149600 [exp] 99 / 4e-22 AT4G26200 651 / 0.0 1-amino-cyclopropane-1-carboxylate synthase 7 (.1) Potri.018G067000 [exp] 95 / 1e-20 AT4G26200 676 / 0.0 1-amino-cyclopropane-1-carboxylate synthase 7 (.1) Potri.001G099400 [exp] 89 / 1e-18 AT4G11280 656 / 0.0 1-aminocyclopropane-1-carboxylic acid (acc) synthase 6 (.1) Potri.015G132100 [exp] 88 / 3e-18 AT5G51690 676 / 0.0 1-amino-cyclopropane-1-carboxylate synthase 12 (.1) Potri.017G014100 [exp] 86 / 1e-17 AT5G53970 528 / 0.0 tyrosine aminotransferase 7, Tyrosine transaminase family protein (.1) Potri.003G132300 [exp] 83 / 8e-17 AT4G11280 659 / 0.0 1-aminocyclopropane-1-carboxylic acid (acc) synthase 6 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026692 [exp] 919 / 0 AT1G70580 878 / 0.0 GLUTAMATE:GLYOXYLATE AMINOTRANSFERASE 2, alanine-2-oxoglutarate aminotransferase 2 (.1.2.3.4) Lus10004623 [exp] 907 / 0 AT1G70580 865 / 0.0 GLUTAMATE:GLYOXYLATE AMINOTRANSFERASE 2, alanine-2-oxoglutarate aminotransferase 2 (.1.2.3.4) Lus10006203 [exp] 897 / 0 AT1G70580 868 / 0.0 GLUTAMATE:GLYOXYLATE AMINOTRANSFERASE 2, alanine-2-oxoglutarate aminotransferase 2 (.1.2.3.4) Lus10036850 [exp] 897 / 0 AT1G70580 872 / 0.0 GLUTAMATE:GLYOXYLATE AMINOTRANSFERASE 2, alanine-2-oxoglutarate aminotransferase 2 (.1.2.3.4) Lus10037455 [exp] 465 / 3e-160 AT1G72330 893 / 0.0 alanine aminotransferase 2 (.1.2.3) Lus10003935 [exp] 463 / 1e-159 AT1G72330 880 / 0.0 alanine aminotransferase 2 (.1.2.3) Lus10017703 [exp] 93 / 5e-20 AT2G20610 486 / 1e-170 SUPERROOT 1, ROOTY 1, ROOTY, HOOKLESS 3, ABERRANT LATERAL ROOT FORMATION 1, Tyrosine transaminase family protein (.1.2) Lus10033659 [exp] 92 / 6e-20 AT5G36160 481 / 3e-169 Tyrosine transaminase family protein (.1) Lus10015023 [exp] 92 / 1e-19 AT5G51690 704 / 0.0 1-amino-cyclopropane-1-carboxylate synthase 12 (.1) Lus10038899 [exp] 91 / 3e-19 AT5G51690 702 / 0.0 1-amino-cyclopropane-1-carboxylate synthase 12 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0061 [poplar] [flax] PLP_aminotran PF00155 [poplar] [flax] Aminotran_1_2 Aminotransferase class I and II
Representative CDS sequence Show only first row Show all	>Potri.010G045100.1 pacid=42798729 polypeptide=Potri.010G045100.1.p locus=Potri.010G045100 ID=Potri.010G045100.1.v4.1 annot-version=v4.1 ATGGCACCTAGAGCATTAGACTATGAATCGTTGAATGAAAATGTCAAGAAGGTTCAGTATGCTGTAAGAGGCGAGTTATATCTTCGAGCTTCTGAGCTTC AAAAGGAAGGGAAGAAGATTATTTTCACAAATGTCGGCAATCCTCATGCTCTTGGACAGAAGCCACTTACCTTTCCTCGCCAGGTGGTTGCTCTCTGCCA AGCACCATTTCTACTAGATGATCCAAATGTGGGGTTGCTATTCCCTGCGGATGCTATTGCAAAAGCTAAGCATTATCTTGCTATGACTACTGGTGGTCTA GGTGCTTACAGTGACTCTCGAGGTATGCCTGGAGTTAGGAAGGAGGTAGCAGATTTCATTGAAAGGCGTGATGGATATCCAAGTGACCCAGAACTCATAT TTCTCACTGATGGTGCCAGTAAAGGTGTCATGCAGATCTTGAGTACTATTATCCGTGGTGAAAGTGATGGGGTTTTGGTTCCAGTGCCACAGTACCCGCT TTACTCTGCTGCAATTTCTCTATTTGGTGGTTCCCTCGTTCCATATTATCTAGAAGAGACAGAAAACTGGGGTCTTGATGTTAATGACCTTAGACAATCG GTTGCACAAGCTCGCTATAAAGGAATAACTGTAAAAGCAATGGTGATTATTAACCCAGGCAACCCCACTGGTCAGTGTCTTAGTGAAGCTAATTTAAGGG AAATATTGCGCTTCTGTTACCAAGAAAACTTGGCTCTTCTTGGAGATGAAGTTTATCAGCAGAACATTTACCAGGATGAACGTCCATTTATTAGTTCTAG AAAGGTTTTGATGGGCATGGGCCCACCCATAAGCAAGGAAGTCCAGCTTGTTTCTTTCCACACTGTGTCCAAAGGATATTGGGGTGAATGTGGGCAGCGG GGTGGATACTTTGAGATGACAAACATTCCTCCAAAGACTGTTGATGAGATTTATAAGGTTGCATCAGTATCACTCAGTCCAAATGTCCCTGCGCAGATAT TTATGGGGCTGATGGTCAACCCGCTTAAACCTGGAAATATTTCATATGAGCAGTTCATTAGGGAAAGCAAAGGAATCATTGAATCATTAAGGAGAAGAGC AAGGATGATGACTGATGGATTCAACAGCTGCAAAAATGTGATATGCAATTTCACAGAAGGTGCTATGTATTCATTTCCTCAAATACGATTGCCACCTAAA GCAATAGAGGCTGCCAAAAAGGCTGGAAAAGTTCCTGATGTTTTCTACTGTCTCAAGCTTTTGGAAGCCACTGGCATTTCCACAGTCCCTGGTTCAGGAT TTGGACAAAAAGAAGGGGTCTTTCATTTAAGGACAACCATTTTACCAGCAGAGGAAGAAATGCCAGAAATCATGGCCAGTTTCAAGAAGTTCAACAATGA GTTCATGGAGCAATATGATGACCGCAGTGGTTATTCAAGGCTGTAA
AA sequence Show only first row Show all	>Potri.010G045100.1 pacid=42798729 polypeptide=Potri.010G045100.1.p locus=Potri.010G045100 ID=Potri.010G045100.1.v4.1 annot-version=v4.1 MAPRALDYESLNENVKKVQYAVRGELYLRASELQKEGKKIIFTNVGNPHALGQKPLTFPRQVVALCQAPFLLDDPNVGLLFPADAIAKAKHYLAMTTGGL GAYSDSRGMPGVRKEVADFIERRDGYPSDPELIFLTDGASKGVMQILSTIIRGESDGVLVPVPQYPLYSAAISLFGGSLVPYYLEETENWGLDVNDLRQS VAQARYKGITVKAMVIINPGNPTGQCLSEANLREILRFCYQENLALLGDEVYQQNIYQDERPFISSRKVLMGMGPPISKEVQLVSFHTVSKGYWGECGQR GGYFEMTNIPPKTVDEIYKVASVSLSPNVPAQIFMGLMVNPLKPGNISYEQFIRESKGIIESLRRRARMMTDGFNSCKNVICNFTEGAMYSFPQIRLPPK AIEAAKKAGKVPDVFYCLKLLEATGISTVPGSGFGQKEGVFHLRTTILPAEEEMPEIMASFKKFNNEFMEQYDDRSGYSRL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G70580		GGT2, AOAT2	GLUTAMATE:GLYOXYLATE AMINOTRAN...		Potri.010G045100 [exp]	0	1
AT3G63140		CSP41A	chloroplast stem-loop binding ...		Potri.002G053000 [exp]	3.00	0.9798
AT3G26650		GAPA-1, GAPA	GLYCERALDEHYDE 3-PHOSPHATE DEH...		Potri.014G140500 [exp]	3.16	0.9811
AT4G04850		ATKEA3, KEA3	K+ efflux antiporter 3, K+ eff...		Potri.009G080800 [exp]	3.74	0.9738
AT3G55800		SBPASE	sedoheptulose-bisphosphatase (...		Potri.008G063800 [exp]	4.00	0.9805
AT3G23700			Nucleic acid-binding proteins ...		Potri.014G148500 [exp]	4.00	0.9768
AT4G39970			Haloacid dehalogenase-like hyd...		Potri.007G095200 [exp]	5.19	0.9635
AT5G36700		ATPGLP1, 2-PHOS...	2-phosphoglycolate phosphatase...		Potri.008G077400 [exp]	6.00	0.9733
AT5G35630		ATGSL1, GLN2, G...	GLUTAMINE SYNTHETASE LIKE 1, g...		Potri.008G200100 [exp]	7.54	0.9680	Pt-NCPGS.8
AT1G79040		PSBR	photosystem II subunit R (.1)		Potri.011G142200 [exp]	7.74	0.9756
					Potri.006G069900 [exp]	8.48	0.9655

Compare expression of checked genes

Potri.010G045100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.