Plant FIBer expression Database

Potri.010G045300 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G70590 435 / 1e-153 F-box family protein (.1)
AT1G18260 63 / 1e-10 HRD3A, EBS5 EMS-mutagenized bri1 suppressor 5, HCP-like superfamily protein (.1)
AT1G73570 41 / 0.001 HCP-like superfamily protein (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.008G187200
[exp]
546 / 0 AT1G70590 405 / 5e-142 F-box family protein (.1)
Potri.012G046300
[exp]
43 / 0.0003 AT1G18260 949 / 0.0 EMS-mutagenized bri1 suppressor 5, HCP-like superfamily protein (.1)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10026694
[exp]
488 / 1e-174 AT1G70590 412 / 1e-144 F-box family protein (.1)
Lus10004621
[exp]
397 / 3e-140 AT1G70590 337 / 1e-116 F-box family protein (.1)
Lus10009042
[exp]
46 / 4e-05 AT1G18260 1020 / 0.0 EMS-mutagenized bri1 suppressor 5, HCP-like superfamily protein (.1)
Lus10009680
[exp]
45 / 0.0001 AT1G18260 1010 / 0.0 EMS-mutagenized bri1 suppressor 5, HCP-like superfamily protein (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0271 F-box PF00646 F-box F-box domain
CL0020 TPR PF08238 Sel1 Sel1 repeat
Representative CDS sequence
>Potri.010G045300.3 pacid=42799871 polypeptide=Potri.010G045300.3.p locus=Potri.010G045300 ID=Potri.010G045300.3.v4.1 annot-version=v4.1
ATGAAGCAGAGTACCTGGCCTGGTCGATCAGACGGCTCTCGTTTCAAATCGCTCCCGATCAAACACCAATTCCATCAATCAGAGTTCAAATCTACCTCCA
AATTCTGGTCAGCATCATTAGCTTCTCGGCAAATAAGATCATCAGATGGTGATTTCTCGAAACTTCCCTTCGATATACTAACCAAAATAGCGGCATCGTT
CACGCTGCCTAATTTGCAAGCGGCGTCGTTGGTGTGCAAGTCATGGAGCGAAGGGCTTCGGCCGTTGAGAGAAGCGATGTTGTTCTTAAAATGGGGAAAG
CGGTTCAAGCATGGGCGAGGAGGTGTGCGCCCTAATTTGAGCAAGGCTCTCGAATCCTTTTTAAAAGGTGCGGCTCGTGGGTCCACCCTCGCTATGGTTG
ATGCTGGTCTTCTTTACTGGGAAATTGGCGACAAAGACAAGGCAATTGCCCTTTATGAGAAGGCTGCTAAGCTTGGAGACCGCTCTGGACAGTGTAATCT
TGGACTTGCTTACTTGCAAGCTGAACCTTCGAAACGTAAGGAAGCAGTAAAATGGTTATTTCAGGCTTCAAAATCTGGTCATGTTCGAGCTCAATACCAA
TTCGCACTTTGTTTACATCAAGGTAGTGGGGTGAATTGTAATCTACAAGAGGCTGCTAGGTGGTATCTAAAAGCTGCTGAAGGTGGATATGTGCGTGCAA
TGTACAATGTTGCATTGTGTTACTCTGTTGGGGAAGGTTTGGCTCAGAGTCATCGACTAGCAAGGAAATGGATGAAGCGGGCAGCAGATCGTGGTCATAG
TAAAGCTCAGTTTGAGCATGGACTTGGACTCTTTTCTGAAGGAGAGCAGTTGAAAGCTGTAGTTTATCTGGAACTTGCCACTCGTGCTGGTGAAACAGCA
GCAGCTCATGTCAAGAATGTAATTTTACAACAACTATCAGCAACTTCACGTGATCGTGTCATGAATCTTGCTGATAATTGGCGTGCTTTACCTTCATCTC
GCTGA
AA sequence
>Potri.010G045300.3 pacid=42799871 polypeptide=Potri.010G045300.3.p locus=Potri.010G045300 ID=Potri.010G045300.3.v4.1 annot-version=v4.1
MKQSTWPGRSDGSRFKSLPIKHQFHQSEFKSTSKFWSASLASRQIRSSDGDFSKLPFDILTKIAASFTLPNLQAASLVCKSWSEGLRPLREAMLFLKWGK
RFKHGRGGVRPNLSKALESFLKGAARGSTLAMVDAGLLYWEIGDKDKAIALYEKAAKLGDRSGQCNLGLAYLQAEPSKRKEAVKWLFQASKSGHVRAQYQ
FALCLHQGSGVNCNLQEAARWYLKAAEGGYVRAMYNVALCYSVGEGLAQSHRLARKWMKRAADRGHSKAQFEHGLGLFSEGEQLKAVVYLELATRAGETA
AAHVKNVILQQLSATSRDRVMNLADNWRALPSSR

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT1G70590 F-box family protein (.1) Potri.010G045300
[exp]
0 1
AT5G23490 unknown protein Potri.004G133700
[exp]
1.41 0.8158
AT5G19400 SMG7 Telomerase activating protein ... Potri.006G038500
[exp]
3.87 0.8026
AT4G11400 ARID ARID/BRIGHT DNA-binding domain... Potri.003G129800
[exp]
4.89 0.8418
AT1G18470 Transmembrane Fragile-X-F-asso... Potri.012G060100
[exp]
6.00 0.7624
AT4G30080 ARF ARF16 auxin response factor 16 (.1) Potri.006G127500
[exp]
9.59 0.7983
AT5G06100 MYB ATMYB33 myb domain protein 33 (.1.2.3) Potri.001G036000
[exp]
11.53 0.7592
AT5G52580 RabGAP/TBC domain-containing p... Potri.006G066300
[exp]
13.78 0.7528
AT1G12450 SNARE associated Golgi protein... Potri.001G114600
[exp]
20.73 0.7198
AT4G10570 UBP9 ubiquitin-specific protease 9 ... Potri.011G152500
[exp]
23.36 0.7290
AT5G63520 unknown protein Potri.015G098700
[exp]
37.74 0.7310

Potri.010G045300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.