Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G26600 631 / 0 ARO4 armadillo repeat only 4 (.1) AT5G66200 201 / 3e-56 ARO2 armadillo repeat only 2 (.1) AT4G34940 192 / 8e-53 ARO1 armadillo repeat only 1 (.1) AT4G36030 166 / 1e-43 ARO3 armadillo repeat only 3 (.1) AT5G13060 47 / 4e-05 ABAP1 ARMADILLO BTB protein 1 (.1) AT5G19330 45 / 0.0002 ARIA ARM repeat protein interacting with ABF2 (.1.2) AT5G65920 44 / 0.0003 ARM repeat superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G082800 [exp] 615 / 0 AT3G26600 610 / 0.0 armadillo repeat only 4 (.1) Potri.005G113000 [exp] 196 / 2e-54 AT5G66200 966 / 0.0 armadillo repeat only 2 (.1) Potri.004G172500 [exp] 196 / 3e-54 AT4G34940 1020 / 0.0 armadillo repeat only 1 (.1) Potri.009G131900 [exp] 186 / 8e-51 AT4G34940 986 / 0.0 armadillo repeat only 1 (.1) Potri.009G165900 [exp] 57 / 3e-08 AT5G42340 671 / 0.0 Plant U-Box 15 (.1) Potri.002G009900 [exp] 50 / 5e-06 AT5G42340 763 / 0.0 Plant U-Box 15 (.1) Potri.017G073400 [exp] 47 / 3e-05 AT5G40140 328 / 9e-108 RING/U-box superfamily protein with ARM repeat domain (.1) Potri.004G205000 [exp] 47 / 4e-05 AT5G42340 654 / 0.0 Plant U-Box 15 (.1) Potri.008G150100 [exp] 46 / 7e-05 AT5G19330 1045 / 0.0 ARM repeat protein interacting with ABF2 (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004620 [exp] 696 / 0 AT3G26600 661 / 0.0 armadillo repeat only 4 (.1) Lus10026695 [exp] 687 / 0 AT3G26600 656 / 0.0 armadillo repeat only 4 (.1) Lus10025059 [exp] 193 / 4e-53 AT4G34940 973 / 0.0 armadillo repeat only 1 (.1) Lus10027837 [exp] 183 / 3e-51 AT4G34940 574 / 0.0 armadillo repeat only 1 (.1) Lus10027838 [exp] 173 / 9e-50 AT4G34940 396 / 2e-135 armadillo repeat only 1 (.1) Lus10028452 [exp] 183 / 1e-49 AT5G66200 965 / 0.0 armadillo repeat only 2 (.1) Lus10041905 [exp] 182 / 3e-49 AT5G66200 966 / 0.0 armadillo repeat only 2 (.1) Lus10037086 [exp] 114 / 6e-28 AT5G66200 354 / 3e-118 armadillo repeat only 2 (.1) Lus10036897 [exp] 117 / 2e-27 AT5G66200 261 / 2e-79 armadillo repeat only 2 (.1) Lus10005065 [exp] 102 / 4e-25 AT4G34940 239 / 2e-76 armadillo repeat only 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [poplar] [flax] TPR PF00514 [poplar] [flax] Arm Armadillo/beta-catenin-like repeat
Representative CDS sequence Show only first row Show all	>Potri.010G045500.1 pacid=42799181 polypeptide=Potri.010G045500.1.p locus=Potri.010G045500 ID=Potri.010G045500.1.v4.1 annot-version=v4.1 ATGGCTGAAGAGAAACGAATCGAAGAGGAACTCGCCTGTGCGATCCTACTAGCAGAACGGGTTCGCTCCGCCGTCGACGAGGCCGAATCCTTCAAGGCCG AGTGCAACCACGTGGGAAAGCACGTTGACACCATCGTCGAGAAGCTGCGTGCTCACGTCCGCTCTGCCCAATCCTTCTACGAGCGTCCCATTCGCCGCAT AGTCGCGGAGGTCTGCAAGAACCTGGAGCGCGCTTTAACCCTTGTACGCAAGTGCAAGCGCCGTAACGTCTTCCGCCGTGTCTTCACCATCATCAGCGCC GCCGATTTTCGGAAAGTGATCAATCTCCTAGAAGCTTCGGTTGGTGACATGAAATGGCTGTCCAGTATCCTGGACTCCAACAATGATAACTCCGGGATTG TGATAACCCTTCCACCCATTGCTAGCAACGATCCGATTCTGGCTTGGGTTTGGTCCTCTATAAGTTCCATTCACATGGGACCTTTGCCTGAAAAAATTGA AGCTGCTAATCAGCTTGCCTCACTTGCTCATGATAATGATAGAAACAAGCAAATCATTGTGGAAGAAGGGGGCGTTCCCCCATTCCTTAGGCTTTTAAGT GAGACTACTTCACCTGATGCTCAAATTGCTGCTGCCACTTCGCTTTATCACTTGTCTAATGATGAGGACAGGGTGACGACTATTCTGGATGAAGCTGGGG TTCCCATTATTGTCAAAGTGCTTGCGGATTCTCCAATGAGGGTTCAAACTTGGGTGGCGCGTTTGGTGGCAAGAATGGCGGAGCGCAATTCGATTGCTCA GGATGATTTTGCAAGGGAGAATGCGATGCGACCGCTGGTGACTTTGTTGTCTTTCGAGACCTTCATGGATGATCAAAAGAGTTTTGTGGGTAAGCAGAGT ATTCATTCTCTTGTTCAGATTAACCAAGAAATGGAGAAAAAATCGTTAATTGATTCGAATAATAATCACCATTACCGCCCGTATGTGAGTTCTTTTTCGA GTTTTCATAGTTCGGAGGGGAGTAGTAGGGGAGGGAGTAATCATAGGAGAGAGAGGGAGAATGAGAGTCCTGAAGTTAAGCATAAGCTGAAAATTAGTTG TGCGGAGGCTTTGTGGATGCTTGCCAGAGATAGTGTGTTAAATAGTAAGAGGATAACAGAAACAAAAGGGCTTCTTTGTTTGGCTAAATTGGTTGAGAAG GGAGAGGGAGAGTTGCAGTTCAATTGTTTGATGACGATACAGGAGATAACTGCTGCAGCTGAGTCCAATGCGGACCTTAGACGTGCTGCTTTTAAGGCTA ATTCCCCTGCTGCCAAGGCAGTTGTTGATCAGCTCTTAAGGGTGATTAAAGAGTTGGATAGTCCTGAATTGCAAGTTCCTGCTATAAGATCGATTGGTTC ATTGGCCAGGACTTTCCCAGCTAGAGAGACTCGAGTAGTTGGCCCTTTGGTTGCCCACCTTAGCAACAGGAGCCAAGAAGTGGCAGCAGAAGCTGCCATC ACACTAGGGAAGTTTGCTACTCCTGAGAATTTTCTTTGTGTTGCGCATGCAAAGGCAATAATCGAGTTCAGTGGTGTACCGCCTTTGATGAGATTGCTTA GGGGAAATGAACCGGCGCAGTTGCATGGGTTGATTCTTCTCTGTTACCTTGCATTACATGCTGGCAATAGTGAGGCTCTGGAACAGGCTAGGGTGTTGAA TGCCCTTGAGGGAGTGGACCAGAAAATGCTTGCACAGTTTCCTGATTTGAAAGAACTGGTGTCCAAGGCAATATATCACATCAATCTCTATCACGCCGGA ACGCATTCTCAAAGGCTGCTGTATGTGCCTTGA
AA sequence Show only first row Show all	>Potri.010G045500.1 pacid=42799181 polypeptide=Potri.010G045500.1.p locus=Potri.010G045500 ID=Potri.010G045500.1.v4.1 annot-version=v4.1 MAEEKRIEEELACAILLAERVRSAVDEAESFKAECNHVGKHVDTIVEKLRAHVRSAQSFYERPIRRIVAEVCKNLERALTLVRKCKRRNVFRRVFTIISA ADFRKVINLLEASVGDMKWLSSILDSNNDNSGIVITLPPIASNDPILAWVWSSISSIHMGPLPEKIEAANQLASLAHDNDRNKQIIVEEGGVPPFLRLLS ETTSPDAQIAAATSLYHLSNDEDRVTTILDEAGVPIIVKVLADSPMRVQTWVARLVARMAERNSIAQDDFARENAMRPLVTLLSFETFMDDQKSFVGKQS IHSLVQINQEMEKKSLIDSNNNHHYRPYVSSFSSFHSSEGSSRGGSNHRRERENESPEVKHKLKISCAEALWMLARDSVLNSKRITETKGLLCLAKLVEK GEGELQFNCLMTIQEITAAAESNADLRRAAFKANSPAAKAVVDQLLRVIKELDSPELQVPAIRSIGSLARTFPARETRVVGPLVAHLSNRSQEVAAEAAI TLGKFATPENFLCVAHAKAIIEFSGVPPLMRLLRGNEPAQLHGLILLCYLALHAGNSEALEQARVLNALEGVDQKMLAQFPDLKELVSKAIYHINLYHAG THSQRLLYVP

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G26600		ARO4	armadillo repeat only 4 (.1)		Potri.010G045500 [exp]	0	1
					Potri.008G141600 [exp]	1.00	0.7762
AT5G67140			F-box/RNI-like superfamily pro...		Potri.005G140000 [exp]	4.00	0.7734
AT2G13650		GONST1	golgi nucleotide sugar transpo...		Potri.005G062900 [exp]	7.74	0.7583
AT1G21840		UREF	urease accessory protein F (.1...		Potri.001G224400 [exp]	12.40	0.7078
AT1G04260		PRA1.D, MPIP7, ...	PRENYLATED RAB ACCEPTOR 1.D, C...		Potri.010G077700 [exp]	16.43	0.7595	Pt-MPI7.1
AT1G54115		ATCCX4	cation calcium exchanger 4 (.1...		Potri.001G167200 [exp]	16.61	0.6869
AT2G31130			unknown protein		Potri.019G089900 [exp]	17.20	0.7420
AT2G23770			protein kinase family protein ...		Potri.005G128200 [exp]	27.87	0.7434
AT5G07910			Leucine-rich repeat (LRR) fami...		Potri.015G048800 [exp]	28.77	0.7072
AT1G23110			unknown protein		Potri.010G111300 [exp]	28.77	0.7125

Compare expression of checked genes

Potri.010G045500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.